Wall clock time and date at job start Tue Mar 31 2020 22:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00025 * 2 1 4 4 C 1.52995 * 109.47249 * 269.99828 * 3 2 1 5 5 H 1.08997 * 112.95671 * 287.14496 * 4 3 2 6 6 C 1.53935 * 113.76152 * 155.49217 * 4 3 2 7 7 C 1.53943 * 86.34090 * 221.96467 * 6 4 3 8 8 N 1.47956 * 86.17928 * 23.71821 * 7 6 4 9 9 C 1.46896 * 110.99908 * 222.41152 * 8 7 6 10 10 C 1.50696 * 109.47640 * 269.36071 * 9 8 7 11 11 O 1.21297 * 119.99940 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00142 * 179.97438 * 10 9 8 13 13 C 1.37097 * 120.00204 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99648 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00258 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99799 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99913 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47545 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47346 * 119.99714 * 17 15 13 20 20 H 1.48505 * 109.47047 * 239.99505 * 17 15 13 21 21 C 1.34781 * 120.00351 * 179.97438 * 2 1 3 22 22 O 1.21279 * 120.00029 * 180.02562 * 21 2 1 23 23 C 1.50698 * 119.99686 * 0.02562 * 21 2 1 24 24 H 1.09000 * 110.72792 * 38.35809 * 23 21 2 25 25 C 1.54941 * 110.67115 * 275.26093 * 23 21 2 26 26 C 1.54591 * 102.92320 * 204.15137 * 25 23 21 27 27 C 1.53997 * 105.13862 * 21.95584 * 26 25 23 28 28 N 1.47898 * 107.05794 * 1.22553 * 27 26 25 29 29 C 1.46906 * 110.99718 * 214.15522 * 28 27 26 30 30 H 1.09004 * 109.47032 * 269.99945 * 1 2 3 31 31 H 1.08998 * 109.47363 * 30.00212 * 1 2 3 32 32 H 1.09006 * 109.47005 * 150.00265 * 1 2 3 33 33 H 1.09001 * 109.47361 * 29.99791 * 3 2 1 34 34 H 1.09000 * 109.47509 * 149.99410 * 3 2 1 35 35 H 1.08998 * 113.73640 * 336.32133 * 6 4 3 36 36 H 1.08998 * 113.73454 * 107.60401 * 6 4 3 37 37 H 1.09005 * 113.75437 * 138.03972 * 7 6 4 38 38 H 1.09001 * 113.75453 * 269.40270 * 7 6 4 39 39 H 1.09001 * 109.46966 * 29.36773 * 9 8 7 40 40 H 1.09011 * 109.46826 * 149.36024 * 9 8 7 41 41 H 0.96998 * 119.99864 * 0.02562 * 12 10 9 42 42 H 0.97003 * 119.99816 * 180.02562 * 16 15 13 43 43 H 1.08997 * 110.72523 * 85.79022 * 25 23 21 44 44 H 1.09004 * 110.87061 * 322.58373 * 25 23 21 45 45 H 1.08995 * 110.31136 * 263.03892 * 26 25 23 46 46 H 1.09001 * 110.39210 * 140.91564 * 26 25 23 47 47 H 1.08997 * 109.91708 * 241.87022 * 27 26 25 48 48 H 1.09005 * 109.91290 * 120.58035 * 27 26 25 49 49 H 1.08992 * 109.47459 * 59.87218 * 29 28 27 50 50 H 1.09004 * 109.47040 * 179.87369 * 29 28 27 51 51 H 1.09000 * 109.47033 * 299.87321 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 3.2145 1.1120 -1.9418 6 6 2.6541 3.2283 -1.5999 7 6 1.7731 3.1153 -2.8572 8 7 1.2179 1.8918 -2.2375 9 6 1.0688 0.8198 -3.2306 10 6 -0.3038 0.8942 -3.8481 11 8 -1.0813 1.7560 -3.4959 12 7 -0.6671 0.0040 -4.7925 13 6 -1.9157 0.0720 -5.3546 14 1 -2.6079 0.8393 -5.0410 15 6 -2.2904 -0.8462 -6.3279 16 7 -1.4478 -1.7795 -6.7099 17 14 -3.9913 -0.7530 -7.0942 18 1 -4.7424 0.3799 -6.4962 19 1 -3.8636 -0.5445 -8.5590 20 1 -4.7205 -2.0207 -6.8365 21 6 2.1389 -1.1672 0.0005 22 8 3.3517 -1.1671 0.0010 23 6 1.3855 -2.4723 0.0005 24 1 0.5005 -2.4068 -0.6325 25 6 0.9963 -2.8792 1.4440 26 6 0.8367 -4.4133 1.3397 27 6 1.6550 -4.8194 0.1000 28 7 2.2645 -3.5851 -0.4409 29 6 2.3501 -3.6389 -1.9065 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8901 -0.5138 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1385 0.5139 35 1 2.2037 3.8161 -0.8000 36 1 3.6845 3.5146 -1.8105 37 1 1.0486 3.9233 -2.9598 38 1 2.3354 2.9278 -3.7720 39 1 1.8239 0.9371 -4.0080 40 1 1.1962 -0.1471 -2.7435 41 1 -0.0451 -0.6849 -5.0745 42 1 -1.7093 -2.4203 -7.3896 43 1 0.0556 -2.4124 1.7360 44 1 1.7881 -2.6206 2.1472 45 1 -0.2123 -4.6761 1.2032 46 1 1.2346 -4.8981 2.2311 47 1 1.0000 -5.2681 -0.6467 48 1 2.4355 -5.5249 0.3851 49 1 1.3498 -3.7493 -2.3251 50 1 2.7999 -2.7181 -2.2782 51 1 2.9642 -4.4890 -2.2037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231253965.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:50 Heat of formation + Delta-G solvation = -13.171695 kcal Electronic energy + Delta-G solvation = -31569.139304 eV Core-core repulsion = 27505.210107 eV Total energy + Delta-G solvation = -4063.929197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.57418 -39.70420 -38.01542 -37.61301 -35.25074 -33.91183 -32.28612 -31.37587 -30.83859 -29.98474 -28.33816 -26.33792 -25.73899 -25.66422 -23.81386 -23.67268 -21.76370 -21.04136 -19.56775 -19.26458 -18.85097 -17.90584 -17.36790 -16.35409 -16.01524 -15.92318 -15.71496 -15.48846 -14.80764 -14.65107 -14.48494 -14.30439 -13.95072 -13.77337 -13.68349 -13.34891 -13.27318 -12.89544 -12.59354 -12.48243 -12.37142 -12.17306 -12.09911 -11.66971 -11.62186 -11.60793 -11.47184 -11.39027 -11.26690 -11.23111 -11.05203 -10.83299 -10.77440 -10.56481 -10.36689 -10.23305 -9.58339 -9.52536 -8.88933 -8.46978 -8.38566 -8.13516 -7.97536 -6.43345 -3.84175 2.69073 2.96896 3.13818 3.24520 3.31387 3.88934 3.91454 4.00430 4.21923 4.38614 4.45623 4.59399 4.74436 4.79353 4.89852 4.98713 5.03693 5.20182 5.22499 5.25983 5.34467 5.39140 5.40953 5.43976 5.50520 5.52890 5.58174 5.60393 5.65665 5.68346 5.70421 5.77178 5.82329 5.82988 5.87845 5.95206 5.99607 6.01756 6.13089 6.26164 6.30999 6.52857 6.63306 6.73777 6.87881 7.24275 7.50214 7.53276 8.04794 8.32886 8.60565 9.17009 9.53468 10.05787 10.74537 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008751 B = 0.004233 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3198.727963 B = 6613.538593 C = 8834.517300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.606 5.606 3 C 0.141 3.859 4 C 0.008 3.992 5 H 0.078 0.922 6 C -0.137 4.137 7 C 0.010 3.990 8 N -0.439 5.439 9 C 0.015 3.985 10 C 0.448 3.552 11 O -0.575 6.575 12 N -0.568 5.568 13 C -0.297 4.297 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.927 3.073 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.523 3.477 22 O -0.525 6.525 23 C 0.042 3.958 24 H 0.079 0.921 25 C -0.108 4.108 26 C -0.129 4.129 27 C 0.035 3.965 28 N -0.498 5.498 29 C 0.016 3.984 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.390 0.610 42 H 0.270 0.730 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.048 0.952 48 H 0.082 0.918 49 H 0.034 0.966 50 H 0.069 0.931 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.579 -1.438 14.526 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.339 5.339 3 C 0.017 3.983 4 C -0.103 4.103 5 H 0.096 0.904 6 C -0.175 4.175 7 C -0.119 4.119 8 N -0.162 5.162 9 C -0.118 4.118 10 C 0.233 3.767 11 O -0.458 6.458 12 N -0.205 5.205 13 C -0.426 4.426 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.755 3.245 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.310 3.690 22 O -0.400 6.400 23 C -0.070 4.070 24 H 0.097 0.903 25 C -0.146 4.146 26 C -0.167 4.167 27 C -0.093 4.093 28 N -0.222 5.222 29 C -0.133 4.133 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.223 0.777 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.067 0.933 48 H 0.100 0.900 49 H 0.052 0.948 50 H 0.088 0.912 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.554 -0.945 15.115 16.923 hybrid contribution -0.640 -0.855 -1.777 2.073 sum 6.913 -1.801 13.338 15.131 Atomic orbital electron populations 1.21975 0.78690 1.05046 1.01147 1.47738 1.07422 1.05417 1.73312 1.21347 0.97390 0.84638 0.94883 1.23939 0.93246 0.96592 0.96479 0.90392 1.23357 1.00004 0.95128 0.99006 1.23840 0.96893 0.95509 0.95665 1.68292 1.29732 1.02361 1.15794 1.22424 0.97419 0.96634 0.95282 1.19693 0.88614 0.84934 0.83441 1.90516 1.53552 1.37567 1.64147 1.41899 1.15392 1.28501 1.34742 1.19725 0.91038 1.14159 1.17702 0.87939 1.25240 0.99646 0.95700 0.97366 1.69623 1.35797 1.17323 1.31677 0.85832 0.81762 0.78247 0.78706 1.19233 1.20778 1.20792 1.20234 0.87895 0.84642 0.76245 1.90666 1.13590 1.87061 1.48671 1.22831 0.94727 0.91043 0.98389 0.90347 1.22377 1.02014 0.95832 0.94381 1.22393 1.00310 0.95524 0.98496 1.22904 0.97407 0.92832 0.96155 1.64439 1.45786 1.01275 1.10729 1.22549 1.00683 1.03230 0.86823 0.93138 0.88468 0.91570 0.89941 0.89747 0.89075 0.91144 0.89067 0.91692 0.92893 0.90331 0.77709 0.91984 0.90276 0.90300 0.91054 0.90630 0.93315 0.90008 0.94792 0.91172 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 10.06 59.84 0.60 1.53 16 2 N -0.61 -7.96 2.82 -181.57 -0.51 -8.47 16 3 C 0.14 1.72 5.54 -4.04 -0.02 1.70 16 4 C 0.01 0.11 3.55 -66.66 -0.24 -0.13 16 5 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 6 C -0.14 -1.52 7.84 -25.79 -0.20 -1.73 16 7 C 0.01 0.14 7.95 -2.76 -0.02 0.12 16 8 N -0.44 -7.00 4.37 -232.14 -1.01 -8.02 16 9 C 0.01 0.26 5.28 -4.98 -0.03 0.24 16 10 C 0.45 10.43 7.83 -10.99 -0.09 10.34 16 11 O -0.57 -15.22 16.01 5.54 0.09 -15.14 16 12 N -0.57 -14.26 5.29 -10.96 -0.06 -14.32 16 13 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 14 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 17 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.52 7.64 6.71 -10.98 -0.07 7.57 16 22 O -0.52 -9.29 16.19 5.56 0.09 -9.20 16 23 C 0.04 0.53 1.89 -66.94 -0.13 0.41 16 24 H 0.08 1.03 6.13 -51.93 -0.32 0.71 16 25 C -0.11 -1.10 6.48 -24.87 -0.16 -1.26 16 26 C -0.13 -1.16 6.93 -25.38 -0.18 -1.33 16 27 C 0.03 0.37 6.70 -2.75 -0.02 0.35 16 28 N -0.50 -6.64 4.85 -232.21 -1.13 -7.76 16 29 C 0.02 0.21 9.30 60.07 0.56 0.77 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 1.45 7.25 -51.93 -0.38 1.07 16 32 H 0.07 0.85 5.94 -51.93 -0.31 0.54 16 33 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 34 H 0.08 1.04 7.42 -51.93 -0.39 0.66 16 35 H 0.09 0.93 7.94 -51.93 -0.41 0.51 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.06 0.91 7.48 -51.93 -0.39 0.52 16 39 H 0.05 0.92 7.38 -51.93 -0.38 0.53 16 40 H 0.08 1.39 8.08 -51.92 -0.42 0.97 16 41 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.50 7.73 -51.93 -0.40 0.10 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16 50 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 51 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 408.35 15.07 6.15 6.15 Total: -1.00 -32.58 408.35 -9.59 -42.17 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.68 Total: 11.64 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -0.23 Total: 10.75 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -1.99 Total: -62.21 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: 0.18 Total: -24.33 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.58 -9.59 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231253965.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.995 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds