Wall clock time and date at job start Tue Mar 31 2020 22:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00025 * 2 1 4 4 C 1.52995 * 109.47249 * 269.99828 * 3 2 1 5 5 H 1.08997 * 112.95671 * 287.14496 * 4 3 2 6 6 C 1.53935 * 113.76152 * 155.49217 * 4 3 2 7 7 C 1.53943 * 86.34090 * 221.96467 * 6 4 3 8 8 N 1.47956 * 86.17928 * 23.71821 * 7 6 4 9 9 C 1.46896 * 110.99908 * 222.41152 * 8 7 6 10 10 C 1.50696 * 109.47640 * 269.36071 * 9 8 7 11 11 O 1.21297 * 119.99940 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00142 * 179.97438 * 10 9 8 13 13 C 1.37097 * 120.00204 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99648 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00258 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99799 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99913 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47545 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47346 * 119.99714 * 17 15 13 20 20 H 1.48505 * 109.47047 * 239.99505 * 17 15 13 21 21 C 1.34781 * 120.00351 * 179.97438 * 2 1 3 22 22 O 1.21279 * 120.00029 * 180.02562 * 21 2 1 23 23 C 1.50698 * 119.99686 * 0.02562 * 21 2 1 24 24 H 1.09000 * 110.72792 * 38.35809 * 23 21 2 25 25 C 1.54941 * 110.67115 * 275.26093 * 23 21 2 26 26 C 1.54591 * 102.92320 * 204.15137 * 25 23 21 27 27 C 1.53997 * 105.13862 * 21.95584 * 26 25 23 28 28 N 1.47898 * 107.05794 * 1.22553 * 27 26 25 29 29 C 1.46906 * 110.99718 * 214.15522 * 28 27 26 30 30 H 1.09004 * 109.47032 * 269.99945 * 1 2 3 31 31 H 1.08998 * 109.47363 * 30.00212 * 1 2 3 32 32 H 1.09006 * 109.47005 * 150.00265 * 1 2 3 33 33 H 1.09001 * 109.47361 * 29.99791 * 3 2 1 34 34 H 1.09000 * 109.47509 * 149.99410 * 3 2 1 35 35 H 1.08998 * 113.73640 * 336.32133 * 6 4 3 36 36 H 1.08998 * 113.73454 * 107.60401 * 6 4 3 37 37 H 1.09005 * 113.75437 * 138.03972 * 7 6 4 38 38 H 1.09001 * 113.75453 * 269.40270 * 7 6 4 39 39 H 1.09001 * 109.46966 * 29.36773 * 9 8 7 40 40 H 1.09011 * 109.46826 * 149.36024 * 9 8 7 41 41 H 0.96998 * 119.99864 * 0.02562 * 12 10 9 42 42 H 0.97003 * 119.99816 * 180.02562 * 16 15 13 43 43 H 1.08997 * 110.72523 * 85.79022 * 25 23 21 44 44 H 1.09004 * 110.87061 * 322.58373 * 25 23 21 45 45 H 1.08995 * 110.31136 * 263.03892 * 26 25 23 46 46 H 1.09001 * 110.39210 * 140.91564 * 26 25 23 47 47 H 1.08997 * 109.91708 * 241.87022 * 27 26 25 48 48 H 1.09005 * 109.91290 * 120.58035 * 27 26 25 49 49 H 1.08992 * 109.47459 * 59.87218 * 29 28 27 50 50 H 1.09004 * 109.47040 * 179.87369 * 29 28 27 51 51 H 1.09000 * 109.47033 * 299.87321 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 3.2145 1.1120 -1.9418 6 6 2.6541 3.2283 -1.5999 7 6 1.7731 3.1153 -2.8572 8 7 1.2179 1.8918 -2.2375 9 6 1.0688 0.8198 -3.2306 10 6 -0.3038 0.8942 -3.8481 11 8 -1.0813 1.7560 -3.4959 12 7 -0.6671 0.0040 -4.7925 13 6 -1.9157 0.0720 -5.3546 14 1 -2.6079 0.8393 -5.0410 15 6 -2.2904 -0.8462 -6.3279 16 7 -1.4478 -1.7795 -6.7099 17 14 -3.9913 -0.7530 -7.0942 18 1 -4.7424 0.3799 -6.4962 19 1 -3.8636 -0.5445 -8.5590 20 1 -4.7205 -2.0207 -6.8365 21 6 2.1389 -1.1672 0.0005 22 8 3.3517 -1.1671 0.0010 23 6 1.3855 -2.4723 0.0005 24 1 0.5005 -2.4068 -0.6325 25 6 0.9963 -2.8792 1.4440 26 6 0.8367 -4.4133 1.3397 27 6 1.6550 -4.8194 0.1000 28 7 2.2645 -3.5851 -0.4409 29 6 2.3501 -3.6389 -1.9065 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8901 -0.5138 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1385 0.5139 35 1 2.2037 3.8161 -0.8000 36 1 3.6845 3.5146 -1.8105 37 1 1.0486 3.9233 -2.9598 38 1 2.3354 2.9278 -3.7720 39 1 1.8239 0.9371 -4.0080 40 1 1.1962 -0.1471 -2.7435 41 1 -0.0451 -0.6849 -5.0745 42 1 -1.7093 -2.4203 -7.3896 43 1 0.0556 -2.4124 1.7360 44 1 1.7881 -2.6206 2.1472 45 1 -0.2123 -4.6761 1.2032 46 1 1.2346 -4.8981 2.2311 47 1 1.0000 -5.2681 -0.6467 48 1 2.4355 -5.5249 0.3851 49 1 1.3498 -3.7493 -2.3251 50 1 2.7999 -2.7181 -2.2782 51 1 2.9642 -4.4890 -2.2037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231253965.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:49 Heat of formation + Delta-G solvation = -37.071742 kcal Electronic energy + Delta-G solvation = -31570.175687 eV Core-core repulsion = 27505.210107 eV Total energy + Delta-G solvation = -4064.965580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70199 -40.88660 -39.60187 -38.87447 -36.39339 -35.93351 -33.32781 -33.19052 -32.19303 -31.07947 -29.35419 -27.49827 -27.39988 -26.64860 -25.31464 -24.87195 -22.74003 -21.85770 -21.10981 -20.64706 -19.93508 -19.91639 -18.42598 -17.71988 -17.36347 -17.18005 -16.92679 -16.61603 -16.44436 -15.99375 -15.80963 -15.56255 -15.31047 -15.16279 -14.83151 -14.62821 -14.28918 -14.16300 -13.97122 -13.78315 -13.54948 -13.43020 -13.26981 -13.05832 -12.96619 -12.70151 -12.62857 -12.49400 -12.43348 -12.38158 -12.32410 -12.13726 -12.11956 -11.89167 -11.74411 -11.57445 -11.50966 -10.71773 -10.42763 -10.02222 -9.84968 -9.46165 -9.42054 -8.47432 -5.96276 1.34937 1.40520 1.54490 1.57755 1.93598 2.02876 2.26907 2.74655 2.99216 3.18010 3.36137 3.45171 3.58597 3.60542 3.77712 3.87308 3.92020 4.10699 4.13333 4.18642 4.23877 4.31683 4.34435 4.37022 4.39441 4.43091 4.44753 4.51549 4.62914 4.66021 4.75721 4.81463 4.83823 4.85584 4.89175 4.93403 4.97007 5.02132 5.09842 5.23824 5.25751 5.38212 5.40612 5.52536 5.75529 5.90136 5.92240 6.07398 6.41829 6.58397 7.11891 7.21496 7.54121 8.09807 8.70274 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008751 B = 0.004233 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3198.727963 B = 6613.538593 C = 8834.517300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.603 5.603 3 C 0.139 3.861 4 C 0.011 3.989 5 H 0.066 0.934 6 C -0.111 4.111 7 C -0.001 4.001 8 N -0.455 5.455 9 C 0.033 3.967 10 C 0.450 3.550 11 O -0.608 6.608 12 N -0.577 5.577 13 C -0.328 4.328 14 H 0.080 0.920 15 C -0.013 4.013 16 N -0.922 5.922 17 Si 0.991 3.009 18 H -0.272 1.272 19 H -0.273 1.273 20 H -0.271 1.271 21 C 0.521 3.479 22 O -0.561 6.561 23 C 0.039 3.961 24 H 0.073 0.927 25 C -0.103 4.103 26 C -0.123 4.123 27 C 0.031 3.969 28 N -0.516 5.516 29 C 0.021 3.979 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.392 0.608 42 H 0.276 0.724 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.028 0.972 50 H 0.048 0.952 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 -1.682 15.712 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.335 5.335 3 C 0.017 3.983 4 C -0.099 4.099 5 H 0.084 0.916 6 C -0.149 4.149 7 C -0.130 4.130 8 N -0.178 5.178 9 C -0.099 4.099 10 C 0.237 3.763 11 O -0.493 6.493 12 N -0.214 5.214 13 C -0.457 4.457 14 H 0.098 0.902 15 C -0.212 4.212 16 N -0.564 5.564 17 Si 0.815 3.185 18 H -0.196 1.196 19 H -0.198 1.198 20 H -0.196 1.196 21 C 0.309 3.691 22 O -0.439 6.439 23 C -0.073 4.073 24 H 0.090 0.910 25 C -0.141 4.141 26 C -0.161 4.161 27 C -0.096 4.096 28 N -0.241 5.241 29 C -0.128 4.128 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.225 0.775 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.046 0.954 50 H 0.067 0.933 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.375 -1.190 16.308 17.937 hybrid contribution -0.557 -0.750 -2.141 2.335 sum 6.818 -1.939 14.167 15.842 Atomic orbital electron populations 1.21934 0.78212 1.03524 1.02574 1.47803 1.07689 1.05533 1.72451 1.21457 0.97829 0.84659 0.94400 1.23947 0.91484 0.98179 0.96281 0.91571 1.23274 1.00808 0.93445 0.97407 1.23927 0.97333 0.94361 0.97336 1.68308 1.31740 1.02144 1.15594 1.22192 0.94041 0.97811 0.95859 1.20523 0.90071 0.83480 0.82273 1.90484 1.55174 1.38677 1.64953 1.41971 1.14963 1.29101 1.35410 1.19678 0.91986 1.14725 1.19345 0.90176 1.26016 1.03180 0.94889 0.97124 1.69691 1.37271 1.17545 1.31864 0.84893 0.77300 0.78356 0.77953 1.19619 1.19819 1.19588 1.20561 0.87563 0.85477 0.75505 1.90640 1.15039 1.87590 1.50620 1.22876 0.94047 0.90269 1.00072 0.90961 1.22405 1.02550 0.96926 0.92246 1.22409 1.00906 0.94483 0.98292 1.23011 0.97913 0.91839 0.96876 1.64439 1.46709 1.02587 1.10358 1.22465 1.00330 1.02609 0.87374 0.90166 0.90756 0.92236 0.88113 0.89518 0.87441 0.88725 0.90328 0.91559 0.91997 0.90145 0.77543 0.91414 0.88459 0.90964 0.89757 0.88972 0.93143 0.89233 0.95364 0.93288 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.94 10.06 127.77 1.28 3.23 16 2 N -0.60 -15.39 2.82 -846.76 -2.39 -17.78 16 3 C 0.14 3.22 5.54 86.38 0.48 3.70 16 4 C 0.01 0.29 3.55 45.02 0.16 0.45 16 5 H 0.07 1.86 7.93 -2.39 -0.02 1.84 16 6 C -0.11 -2.23 7.84 31.24 0.25 -1.98 16 7 C 0.00 -0.02 7.95 86.41 0.69 0.66 16 8 N -0.45 -14.37 4.37 -888.34 -3.88 -18.25 16 9 C 0.03 1.21 5.28 85.56 0.45 1.67 16 10 C 0.45 21.47 7.83 87.66 0.69 22.16 16 11 O -0.61 -33.09 16.01 -3.08 -0.05 -33.14 16 12 N -0.58 -29.80 5.29 -306.99 -1.62 -31.42 16 13 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 14 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 15 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 16 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 17 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 C 0.52 15.11 6.71 87.66 0.59 15.69 16 22 O -0.56 -19.93 16.19 -3.03 -0.05 -19.98 16 23 C 0.04 0.98 1.89 44.52 0.08 1.07 16 24 H 0.07 1.90 6.13 -2.39 -0.01 1.89 16 25 C -0.10 -1.93 6.48 31.80 0.21 -1.72 16 26 C -0.12 -1.93 6.93 31.47 0.22 -1.71 16 27 C 0.03 0.61 6.70 86.45 0.58 1.19 16 28 N -0.52 -13.62 4.85 -888.57 -4.31 -17.93 16 29 C 0.02 0.57 9.30 127.69 1.19 1.75 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 2.19 7.25 -2.39 -0.02 2.18 16 32 H 0.06 1.52 5.94 -2.38 -0.01 1.50 16 33 H 0.10 1.97 7.84 -2.39 -0.02 1.95 16 34 H 0.09 2.01 7.42 -2.39 -0.02 2.00 16 35 H 0.11 1.85 7.94 -2.39 -0.02 1.83 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 38 H 0.07 1.82 7.48 -2.39 -0.02 1.80 16 39 H 0.06 2.16 7.38 -2.39 -0.02 2.14 16 40 H 0.08 2.92 8.08 -2.38 -0.02 2.90 16 41 H 0.39 19.66 7.90 -92.71 -0.73 18.93 16 42 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 43 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.46 8.05 -2.38 -0.02 1.45 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 0.98 7.73 -2.39 -0.02 0.96 16 48 H 0.09 1.61 8.14 -2.38 -0.02 1.60 16 49 H 0.03 0.77 8.00 -2.39 -0.02 0.75 16 50 H 0.05 1.50 8.00 -2.38 -0.02 1.48 16 51 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -71.34 408.35 -1.67 -73.01 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: 0.19 Total: 42.09 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 8.14 Total: 28.30 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -11.93 Total: -134.91 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -0.10 Total: -53.12 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -71.34 -1.67 -73.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231253965.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.935 kcal (2) G-P(sol) polarization free energy of solvation -71.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds