Wall clock time and date at job start Tue Mar 31 2020 21:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47139 * 2 1 4 4 C 1.34772 * 120.00440 * 88.44077 * 3 2 1 5 5 O 1.21345 * 120.00137 * 174.53429 * 4 3 2 6 6 C 1.49450 * 119.99630 * 354.53381 * 4 3 2 7 7 O 1.21350 * 120.00128 * 354.43350 * 6 4 3 8 8 N 1.34786 * 119.99705 * 174.43326 * 6 4 3 9 9 C 1.46504 * 119.99700 * 180.02562 * 8 6 4 10 10 C 1.53039 * 109.45680 * 205.00281 * 9 8 6 11 11 C 1.53187 * 109.31171 * 178.62722 * 10 9 8 12 12 N 1.46931 * 108.77569 * 54.63482 * 11 10 9 13 13 C 1.36936 * 120.63472 * 126.37115 * 12 11 10 14 14 H 1.07997 * 119.99504 * 327.18273 * 13 12 11 15 15 C 1.38807 * 120.00154 * 147.17802 * 13 12 11 16 16 N 1.31616 * 120.00326 * 345.24841 * 15 13 12 17 17 Si 1.86802 * 119.99834 * 165.24493 * 15 13 12 18 18 H 1.48496 * 109.47082 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.46934 * 299.99931 * 17 15 13 20 20 H 1.48494 * 109.47156 * 60.00032 * 17 15 13 21 21 C 1.46924 * 118.73405 * 306.63965 * 12 11 10 22 22 C 1.52763 * 109.01020 * 53.31330 * 21 12 11 23 23 C 1.46501 * 119.99784 * 268.44376 * 3 2 1 24 24 H 1.09004 * 110.27918 * 359.36307 * 23 3 2 25 25 C 1.54598 * 110.31245 * 237.16668 * 23 3 2 26 26 C 1.54933 * 102.92629 * 219.12794 * 25 23 3 27 27 N 1.48541 * 103.22493 * 37.41197 * 26 25 23 28 28 C 1.47899 * 105.81981 * 320.79165 * 27 26 25 29 29 H 1.08998 * 109.46889 * 60.00668 * 1 2 3 30 30 H 1.09003 * 109.46684 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47559 * 300.00164 * 1 2 3 32 32 H 1.08997 * 109.47559 * 239.99836 * 2 1 3 33 33 H 1.09004 * 109.47212 * 119.99584 * 2 1 3 34 34 H 0.97001 * 120.00055 * 0.02562 * 8 6 4 35 35 H 1.09004 * 109.45768 * 324.97149 * 9 8 6 36 36 H 1.08995 * 109.49865 * 58.67253 * 10 9 8 37 37 H 1.09003 * 109.51964 * 298.59043 * 10 9 8 38 38 H 1.08996 * 109.58572 * 294.84716 * 11 10 9 39 39 H 1.09004 * 109.70342 * 174.48811 * 11 10 9 40 40 H 0.97003 * 120.00381 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.58555 * 173.14494 * 21 12 11 42 42 H 1.09003 * 109.59132 * 293.56844 * 21 12 11 43 43 H 1.08996 * 109.56351 * 185.55182 * 22 21 12 44 44 H 1.09002 * 109.36074 * 65.49451 * 22 21 12 45 45 H 1.08999 * 110.72032 * 337.48573 * 25 23 3 46 46 H 1.08999 * 110.72241 * 100.76152 * 25 23 3 47 47 H 1.09003 * 110.66708 * 278.97986 * 26 25 23 48 48 H 1.08995 * 110.81040 * 155.91451 * 26 25 23 49 49 H 1.00900 * 110.99620 * 81.30811 * 27 26 25 50 50 H 1.09000 * 109.91987 * 265.97886 * 28 27 26 51 51 H 1.08999 * 110.07946 * 144.77259 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2130 2.0272 1.1667 5 8 2.7104 3.1340 1.1717 6 6 1.8163 1.3803 2.4542 7 8 1.2278 0.3191 2.4440 8 7 2.1123 1.9756 3.6267 9 6 1.7239 1.3412 4.8888 10 6 1.5872 2.4099 5.9757 11 6 1.1478 1.7475 7.2852 12 7 2.0941 0.6721 7.6119 13 6 2.7095 0.6317 8.8346 14 1 2.9540 1.5506 9.3466 15 6 3.0188 -0.5902 9.4159 16 7 2.4761 -1.6959 8.9520 17 14 4.2054 -0.6654 10.8566 18 1 4.3672 -2.0759 11.2916 19 1 5.5235 -0.1218 10.4411 20 1 3.6695 0.1418 11.9819 21 6 2.3722 -0.3558 6.5996 22 6 2.7937 0.3271 5.2998 23 6 2.2950 2.0603 -1.2683 24 1 2.0949 1.3922 -2.1060 25 6 3.7613 2.5486 -1.3069 26 6 3.6486 3.9296 -2.0000 27 7 2.3797 4.4795 -1.4577 28 6 1.4426 3.3373 -1.3879 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.5824 2.8241 3.6348 35 1 0.7696 0.8303 4.7599 36 1 0.8418 3.1447 5.6717 37 1 2.5472 2.9048 6.1226 38 1 0.1478 1.3305 7.1661 39 1 1.1428 2.4859 8.0870 40 1 2.6926 -2.5499 9.3580 41 1 3.1768 -1.0035 6.9480 42 1 1.4741 -0.9478 6.4236 43 1 2.9070 -0.4206 4.5148 44 1 3.7426 0.8412 5.4529 45 1 4.1591 2.6548 -0.2977 46 1 4.3782 1.8703 -1.8964 47 1 3.5860 3.8132 -3.0820 48 1 4.4903 4.5677 -1.7311 49 1 2.5226 4.8862 -0.5454 50 1 0.8383 3.2969 -2.2942 51 1 0.7969 3.4358 -0.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262068262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:26 Heat of formation + Delta-G solvation = -31.415823 kcal Electronic energy + Delta-G solvation = -31001.003655 eV Core-core repulsion = 26936.283334 eV Total energy + Delta-G solvation = -4064.720321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.26986 -39.45451 -37.77459 -37.39715 -36.00719 -34.38510 -32.16659 -31.04376 -30.19041 -29.66958 -29.51549 -28.59562 -25.72840 -24.45255 -23.19370 -22.32454 -22.13980 -21.92958 -20.98612 -19.89002 -19.01588 -17.76934 -17.19008 -16.77628 -16.61956 -15.93609 -15.76736 -15.43016 -15.05066 -14.74756 -14.39654 -14.34471 -13.94957 -13.80967 -13.66583 -13.58259 -13.04869 -12.96277 -12.72988 -12.63954 -12.46909 -12.41945 -12.00246 -11.78280 -11.60496 -11.54281 -11.53555 -11.31226 -11.15710 -11.03238 -10.83157 -10.76348 -10.44083 -10.30567 -10.13690 -9.85650 -9.72869 -9.36804 -9.25311 -8.86369 -8.66707 -8.48698 -6.65785 -5.82740 -3.30809 1.37676 2.21770 3.15974 3.35039 3.37621 3.42052 3.42952 3.97610 4.28334 4.38450 4.46157 4.55898 4.74744 4.81814 4.95668 5.08111 5.16335 5.18806 5.20375 5.33423 5.36535 5.38451 5.47780 5.53569 5.53907 5.60581 5.66047 5.73459 5.78062 5.83906 5.99258 6.07194 6.18679 6.24716 6.27508 6.34502 6.45687 6.49662 6.59604 6.69593 6.72065 6.85241 6.89062 7.09457 7.27486 7.32962 7.58156 7.69239 7.77256 8.05949 8.44251 9.17748 9.79237 10.38673 11.26013 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.002453 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.912405 B =11410.228169 C =11779.656723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.580 5.580 4 C 0.508 3.492 5 O -0.523 6.523 6 C 0.499 3.501 7 O -0.512 6.512 8 N -0.690 5.690 9 C 0.150 3.850 10 C -0.140 4.140 11 C 0.149 3.851 12 N -0.591 5.591 13 C -0.260 4.260 14 H 0.063 0.937 15 C 0.008 3.992 16 N -0.900 5.900 17 Si 0.903 3.097 18 H -0.290 1.290 19 H -0.283 1.283 20 H -0.281 1.281 21 C 0.178 3.822 22 C -0.147 4.147 23 C 0.116 3.884 24 H 0.100 0.900 25 C -0.170 4.170 26 C 0.049 3.951 27 N -0.669 5.669 28 C 0.039 3.961 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.406 0.594 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.255 0.745 41 H 0.082 0.918 42 H 0.022 0.978 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.349 0.651 50 H 0.080 0.920 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 7.032 -22.536 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.313 5.313 4 C 0.292 3.708 5 O -0.399 6.399 6 C 0.279 3.721 7 O -0.389 6.389 8 N -0.341 5.341 9 C 0.047 3.953 10 C -0.180 4.180 11 C 0.022 3.978 12 N -0.314 5.314 13 C -0.390 4.390 14 H 0.081 0.919 15 C -0.191 4.191 16 N -0.543 5.543 17 Si 0.732 3.268 18 H -0.216 1.216 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.051 3.949 22 C -0.187 4.187 23 C 0.011 3.989 24 H 0.118 0.882 25 C -0.209 4.209 26 C -0.081 4.081 27 N -0.297 5.297 28 C -0.092 4.092 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.241 0.759 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.166 0.834 50 H 0.099 0.901 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.252 6.980 -23.062 24.128 hybrid contribution 1.163 -0.439 1.407 1.877 sum -0.089 6.540 -21.656 22.622 Atomic orbital electron populations 1.22075 0.95139 1.02548 1.01914 1.22069 0.95539 0.80596 1.04217 1.48011 1.63638 1.15011 1.04667 1.20386 0.79308 0.85849 0.85291 1.90666 1.42130 1.19846 1.87295 1.20003 0.81210 0.85719 0.85168 1.90718 1.40222 1.21077 1.86873 1.46215 1.57200 1.25273 1.05448 1.21216 0.99368 0.94376 0.80352 1.22363 1.01663 0.97090 0.96878 1.20851 0.92416 0.91609 0.92919 1.44015 1.47374 1.27470 1.12505 1.19075 1.32690 0.91894 0.95325 0.91910 1.25188 0.99741 0.96305 0.97884 1.70006 1.43249 0.97834 1.43172 0.86377 0.81295 0.76669 0.82413 1.21599 1.20949 1.20760 1.20586 0.99549 0.90278 0.84451 1.22518 0.97896 0.97927 1.00360 1.22599 0.95702 0.95494 0.85122 0.88185 1.23500 0.95738 0.98491 1.03215 1.22989 0.92405 0.93285 0.99443 1.62751 1.09446 1.26942 1.30525 1.23029 0.95789 0.88187 1.02163 0.93436 0.91458 0.91522 0.91103 0.87300 0.75855 0.89562 0.92416 0.91643 0.96118 0.92156 0.93472 0.89959 0.95944 0.92796 0.92479 0.89360 0.90875 0.90414 0.90593 0.83449 0.90129 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.73 37.16 0.36 -1.14 16 2 C 0.10 0.93 5.65 -4.04 -0.02 0.91 16 3 N -0.58 -5.92 2.45 -165.07 -0.40 -6.33 16 4 C 0.51 6.33 6.61 -11.59 -0.08 6.25 16 5 O -0.52 -6.87 12.59 5.50 0.07 -6.80 16 6 C 0.50 7.04 7.67 -11.58 -0.09 6.96 16 7 O -0.51 -8.00 11.26 5.50 0.06 -7.94 16 8 N -0.69 -9.74 5.07 -54.19 -0.27 -10.01 16 9 C 0.15 2.48 2.42 -67.89 -0.16 2.32 16 10 C -0.14 -2.28 5.55 -26.61 -0.15 -2.42 16 11 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 12 N -0.59 -14.43 2.97 -172.58 -0.51 -14.95 16 13 C -0.26 -7.00 9.54 -15.06 -0.14 -7.15 16 14 H 0.06 1.66 7.87 -52.49 -0.41 1.24 16 15 C 0.01 0.23 4.93 -17.43 -0.09 0.15 16 16 N -0.90 -25.89 11.44 55.49 0.63 -25.26 16 17 Si 0.90 21.40 29.58 -169.99 -5.03 16.37 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.18 4.17 5.23 -3.93 -0.02 4.15 16 22 C -0.15 -2.79 5.63 -26.84 -0.15 -2.94 16 23 C 0.12 0.99 3.46 -66.57 -0.23 0.76 16 24 H 0.10 0.67 7.82 -51.93 -0.41 0.26 16 25 C -0.17 -1.46 6.24 -24.87 -0.16 -1.62 16 26 C 0.05 0.40 7.55 -1.90 -0.01 0.38 16 27 N -0.67 -6.50 7.42 -110.08 -0.82 -7.32 16 28 C 0.04 0.36 6.42 -2.75 -0.02 0.34 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.79 6.75 -51.93 -0.35 0.44 16 32 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 33 H 0.11 1.27 5.66 -51.93 -0.29 0.98 16 34 H 0.41 5.19 8.09 -40.82 -0.33 4.86 16 35 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.08 2.16 6.38 -51.93 -0.33 1.83 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.09 0.98 5.99 -51.93 -0.31 0.67 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.35 3.76 7.91 -39.29 -0.31 3.45 16 50 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.07 0.74 7.25 -51.93 -0.38 0.36 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -29.35 390.39 -9.92 -39.27 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.55 Total: 7.15 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -0.98 Total: 9.92 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -1.37 Total: -63.86 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.13 Total: -14.74 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.35 -9.92 -39.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262068262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.855 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds