Wall clock time and date at job start Tue Mar 31 2020 21:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47139 * 2 1 4 4 C 1.34772 * 120.00440 * 88.44077 * 3 2 1 5 5 O 1.21345 * 120.00137 * 174.53429 * 4 3 2 6 6 C 1.49450 * 119.99630 * 354.53381 * 4 3 2 7 7 O 1.21350 * 120.00128 * 354.43350 * 6 4 3 8 8 N 1.34786 * 119.99705 * 174.43326 * 6 4 3 9 9 C 1.46504 * 119.99700 * 180.02562 * 8 6 4 10 10 C 1.53039 * 109.45680 * 205.00281 * 9 8 6 11 11 C 1.53187 * 109.31171 * 178.62722 * 10 9 8 12 12 N 1.46931 * 108.77569 * 54.63482 * 11 10 9 13 13 C 1.36936 * 120.63472 * 126.37115 * 12 11 10 14 14 H 1.07997 * 119.99504 * 327.18273 * 13 12 11 15 15 C 1.38807 * 120.00154 * 147.17802 * 13 12 11 16 16 N 1.31616 * 120.00326 * 345.24841 * 15 13 12 17 17 Si 1.86802 * 119.99834 * 165.24493 * 15 13 12 18 18 H 1.48496 * 109.47082 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.46934 * 299.99931 * 17 15 13 20 20 H 1.48494 * 109.47156 * 60.00032 * 17 15 13 21 21 C 1.46924 * 118.73405 * 306.63965 * 12 11 10 22 22 C 1.52763 * 109.01020 * 53.31330 * 21 12 11 23 23 C 1.46501 * 119.99784 * 268.44376 * 3 2 1 24 24 H 1.09004 * 110.27918 * 359.36307 * 23 3 2 25 25 C 1.54598 * 110.31245 * 237.16668 * 23 3 2 26 26 C 1.54933 * 102.92629 * 219.12794 * 25 23 3 27 27 N 1.48541 * 103.22493 * 37.41197 * 26 25 23 28 28 C 1.47899 * 105.81981 * 320.79165 * 27 26 25 29 29 H 1.08998 * 109.46889 * 60.00668 * 1 2 3 30 30 H 1.09003 * 109.46684 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47559 * 300.00164 * 1 2 3 32 32 H 1.08997 * 109.47559 * 239.99836 * 2 1 3 33 33 H 1.09004 * 109.47212 * 119.99584 * 2 1 3 34 34 H 0.97001 * 120.00055 * 0.02562 * 8 6 4 35 35 H 1.09004 * 109.45768 * 324.97149 * 9 8 6 36 36 H 1.08995 * 109.49865 * 58.67253 * 10 9 8 37 37 H 1.09003 * 109.51964 * 298.59043 * 10 9 8 38 38 H 1.08996 * 109.58572 * 294.84716 * 11 10 9 39 39 H 1.09004 * 109.70342 * 174.48811 * 11 10 9 40 40 H 0.97003 * 120.00381 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.58555 * 173.14494 * 21 12 11 42 42 H 1.09003 * 109.59132 * 293.56844 * 21 12 11 43 43 H 1.08996 * 109.56351 * 185.55182 * 22 21 12 44 44 H 1.09002 * 109.36074 * 65.49451 * 22 21 12 45 45 H 1.08999 * 110.72032 * 337.48573 * 25 23 3 46 46 H 1.08999 * 110.72241 * 100.76152 * 25 23 3 47 47 H 1.09003 * 110.66708 * 278.97986 * 26 25 23 48 48 H 1.08995 * 110.81040 * 155.91451 * 26 25 23 49 49 H 1.00900 * 110.99620 * 81.30811 * 27 26 25 50 50 H 1.09000 * 109.91987 * 265.97886 * 28 27 26 51 51 H 1.08999 * 110.07946 * 144.77259 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2130 2.0272 1.1667 5 8 2.7104 3.1340 1.1717 6 6 1.8163 1.3803 2.4542 7 8 1.2278 0.3191 2.4440 8 7 2.1123 1.9756 3.6267 9 6 1.7239 1.3412 4.8888 10 6 1.5872 2.4099 5.9757 11 6 1.1478 1.7475 7.2852 12 7 2.0941 0.6721 7.6119 13 6 2.7095 0.6317 8.8346 14 1 2.9540 1.5506 9.3466 15 6 3.0188 -0.5902 9.4159 16 7 2.4761 -1.6959 8.9520 17 14 4.2054 -0.6654 10.8566 18 1 4.3672 -2.0759 11.2916 19 1 5.5235 -0.1218 10.4411 20 1 3.6695 0.1418 11.9819 21 6 2.3722 -0.3558 6.5996 22 6 2.7937 0.3271 5.2998 23 6 2.2950 2.0603 -1.2683 24 1 2.0949 1.3922 -2.1060 25 6 3.7613 2.5486 -1.3069 26 6 3.6486 3.9296 -2.0000 27 7 2.3797 4.4795 -1.4577 28 6 1.4426 3.3373 -1.3879 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.5824 2.8241 3.6348 35 1 0.7696 0.8303 4.7599 36 1 0.8418 3.1447 5.6717 37 1 2.5472 2.9048 6.1226 38 1 0.1478 1.3305 7.1661 39 1 1.1428 2.4859 8.0870 40 1 2.6926 -2.5499 9.3580 41 1 3.1768 -1.0035 6.9480 42 1 1.4741 -0.9478 6.4236 43 1 2.9070 -0.4206 4.5148 44 1 3.7426 0.8412 5.4529 45 1 4.1591 2.6548 -0.2977 46 1 4.3782 1.8703 -1.8964 47 1 3.5860 3.8132 -3.0820 48 1 4.4903 4.5677 -1.7311 49 1 2.5226 4.8862 -0.5454 50 1 0.8383 3.2969 -2.2942 51 1 0.7969 3.4358 -0.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262068262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:25 Heat of formation + Delta-G solvation = -52.009216 kcal Electronic energy + Delta-G solvation = -31001.896652 eV Core-core repulsion = 26936.283334 eV Total energy + Delta-G solvation = -4065.613318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.23255 -40.54758 -39.06987 -38.45584 -36.98761 -35.83166 -33.91752 -31.85541 -31.79310 -31.32748 -30.25539 -29.38318 -27.29136 -25.77247 -24.22784 -23.94369 -23.34193 -22.66872 -22.07888 -21.27942 -20.25974 -18.91023 -18.54794 -18.02440 -17.51238 -17.04152 -16.91098 -16.69554 -16.24721 -15.86531 -15.68173 -15.39342 -15.27023 -15.23353 -14.82386 -14.66064 -14.57702 -14.29079 -14.10112 -13.76764 -13.36457 -13.22260 -13.18992 -13.03775 -12.76944 -12.69183 -12.60298 -12.47114 -12.36784 -12.29669 -12.20958 -12.09498 -12.03773 -11.86553 -11.68463 -11.53555 -11.39066 -10.59272 -10.35527 -10.19845 -10.07000 -9.41834 -8.65692 -7.89446 -5.40654 0.33476 1.25059 1.47061 1.49195 1.55859 2.10191 2.36636 2.50134 3.23769 3.28633 3.31360 3.65295 3.68830 3.80631 3.82397 4.00117 4.05589 4.15573 4.26805 4.30201 4.39838 4.41961 4.43355 4.51317 4.59746 4.63818 4.71825 4.78871 4.81280 4.89070 4.95624 4.97512 4.98907 5.01590 5.04793 5.10086 5.13360 5.28041 5.30054 5.40222 5.45526 5.51005 5.63308 5.66039 5.78227 5.93022 6.22604 6.32568 6.39844 6.70737 6.96322 7.13477 7.82001 8.36941 9.17346 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.002453 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.912405 B =11410.228169 C =11779.656723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.097 3.903 3 N -0.571 5.571 4 C 0.509 3.491 5 O -0.531 6.531 6 C 0.496 3.504 7 O -0.528 6.528 8 N -0.684 5.684 9 C 0.163 3.837 10 C -0.125 4.125 11 C 0.144 3.856 12 N -0.609 5.609 13 C -0.268 4.268 14 H 0.068 0.932 15 C -0.046 4.046 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.295 1.295 19 H -0.277 1.277 20 H -0.273 1.273 21 C 0.188 3.812 22 C -0.130 4.130 23 C 0.114 3.886 24 H 0.130 0.870 25 C -0.166 4.166 26 C 0.050 3.950 27 N -0.678 5.678 28 C 0.041 3.959 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.415 0.585 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.015 0.985 39 H 0.066 0.934 40 H 0.251 0.749 41 H 0.047 0.953 42 H -0.004 1.004 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.339 0.661 50 H 0.096 0.904 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 8.347 -24.702 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 N -0.303 5.303 4 C 0.291 3.709 5 O -0.409 6.409 6 C 0.277 3.723 7 O -0.406 6.406 8 N -0.336 5.336 9 C 0.059 3.941 10 C -0.164 4.164 11 C 0.018 3.982 12 N -0.333 5.333 13 C -0.398 4.398 14 H 0.086 0.914 15 C -0.243 4.243 16 N -0.579 5.579 17 Si 0.795 3.205 18 H -0.222 1.222 19 H -0.203 1.203 20 H -0.198 1.198 21 C 0.061 3.939 22 C -0.171 4.171 23 C 0.010 3.990 24 H 0.148 0.852 25 C -0.206 4.206 26 C -0.079 4.079 27 N -0.305 5.305 28 C -0.090 4.090 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.033 0.967 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.014 0.986 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.095 0.905 49 H 0.155 0.845 50 H 0.114 0.886 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.787 8.331 -25.273 26.622 hybrid contribution 0.959 -0.846 2.013 2.385 sum 0.172 7.485 -23.259 24.435 Atomic orbital electron populations 1.22007 0.95011 1.02787 1.01278 1.22100 0.95567 0.80145 1.04644 1.48070 1.62501 1.15158 1.04579 1.20028 0.79780 0.85787 0.85262 1.90671 1.42803 1.20098 1.87323 1.20414 0.80658 0.85453 0.85814 1.90728 1.40734 1.21847 1.87274 1.45953 1.57511 1.25522 1.04635 1.20829 0.97589 0.93977 0.81720 1.22166 1.02881 0.96977 0.94393 1.21015 0.91372 0.90633 0.95191 1.44266 1.48457 1.28380 1.12159 1.19443 1.32275 0.92077 0.96026 0.91428 1.25962 1.01547 0.96057 1.00684 1.70167 1.44909 0.98120 1.44753 0.85350 0.79323 0.76241 0.79556 1.22165 1.20314 1.19835 1.20303 0.97129 0.90121 0.86332 1.22250 0.98618 0.98329 0.97868 1.22838 0.95570 0.95770 0.84815 0.85239 1.23446 0.95830 0.99241 1.02038 1.23060 0.91781 0.92889 1.00190 1.62810 1.10357 1.27386 1.29928 1.23044 0.95639 0.88297 1.01994 0.91751 0.90835 0.94341 0.87898 0.89640 0.74753 0.91037 0.89202 0.90989 0.96660 0.91577 0.94050 0.93400 0.98593 0.92758 0.92374 0.91977 0.89100 0.88773 0.90519 0.84490 0.88621 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.73 71.98 0.70 -1.95 16 2 C 0.10 1.66 5.65 86.38 0.49 2.15 16 3 N -0.57 -10.62 2.45 -794.51 -1.95 -12.56 16 4 C 0.51 12.17 6.61 87.27 0.58 12.74 16 5 O -0.53 -13.45 12.59 -3.23 -0.04 -13.49 16 6 C 0.50 13.74 7.67 87.27 0.67 14.40 16 7 O -0.53 -16.54 11.26 -3.25 -0.04 -16.58 16 8 N -0.68 -18.65 5.07 -443.72 -2.25 -20.89 16 9 C 0.16 5.31 2.42 45.02 0.11 5.42 16 10 C -0.12 -3.85 5.55 30.67 0.17 -3.68 16 11 C 0.14 5.73 6.52 86.36 0.56 6.29 16 12 N -0.61 -30.24 2.97 -699.93 -2.08 -32.32 16 13 C -0.27 -14.58 9.54 84.03 0.80 -13.77 16 14 H 0.07 3.54 7.87 -2.91 -0.02 3.52 16 15 C -0.05 -2.59 4.93 84.86 0.42 -2.17 16 16 N -0.93 -55.65 11.44 21.65 0.25 -55.40 16 17 Si 0.97 44.57 29.58 68.60 2.03 46.60 16 18 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 C 0.19 9.16 5.23 86.22 0.45 9.61 16 22 C -0.13 -5.02 5.63 30.53 0.17 -4.84 16 23 C 0.11 1.63 3.46 45.87 0.16 1.78 16 24 H 0.13 1.15 7.82 -2.38 -0.02 1.13 16 25 C -0.17 -2.46 6.24 31.80 0.20 -2.26 16 26 C 0.05 0.70 7.55 86.65 0.65 1.36 16 27 N -0.68 -12.02 7.42 -502.19 -3.72 -15.74 16 28 C 0.04 0.67 6.42 86.45 0.55 1.22 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 0.89 6.75 -2.39 -0.02 0.87 16 32 H 0.10 1.14 7.90 -2.39 -0.02 1.12 16 33 H 0.09 1.93 5.66 -2.38 -0.01 1.92 16 34 H 0.42 9.97 8.09 -92.71 -0.75 9.22 16 35 H 0.07 2.59 7.58 -2.38 -0.02 2.58 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 2.53 7.93 -2.38 -0.02 2.51 16 40 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.05 2.64 6.38 -2.39 -0.02 2.62 16 42 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.06 1.29 5.99 -2.39 -0.01 1.28 16 46 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.34 7.01 7.91 -89.69 -0.71 6.30 16 50 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.05 1.01 7.25 -2.39 -0.02 0.99 16 Total: -1.00 -65.43 390.39 -1.63 -67.07 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.52 Total: 27.03 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 6.69 Total: 26.30 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -9.75 Total: -136.93 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.08 Total: -30.07 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -65.43 -1.63 -67.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262068262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.057 kcal (2) G-P(sol) polarization free energy of solvation -65.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds