Wall clock time and date at job start Tue Mar 31 2020 21:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46868 * 2 1 4 4 C 1.34774 * 119.99718 * 82.52108 * 3 2 1 5 5 O 1.21352 * 120.00003 * 182.15623 * 4 3 2 6 6 C 1.49457 * 120.00313 * 2.15257 * 4 3 2 7 7 O 1.21348 * 119.99330 * 355.57938 * 6 4 3 8 8 N 1.34771 * 120.00137 * 175.57972 * 6 4 3 9 9 C 1.46503 * 119.99650 * 180.02562 * 8 6 4 10 10 C 1.53040 * 109.45854 * 275.06285 * 9 8 6 11 11 C 1.53195 * 109.31242 * 178.61584 * 10 9 8 12 12 N 1.46925 * 108.77466 * 54.63824 * 11 10 9 13 13 C 1.36934 * 120.62976 * 126.36868 * 12 11 10 14 14 H 1.08004 * 120.00255 * 328.35581 * 13 12 11 15 15 C 1.38817 * 119.99850 * 148.35315 * 13 12 11 16 16 N 1.31617 * 120.00013 * 340.04861 * 15 13 12 17 17 Si 1.86797 * 119.99687 * 160.04628 * 15 13 12 18 18 H 1.48496 * 109.47301 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46941 * 120.00270 * 17 15 13 20 20 H 1.48504 * 109.46908 * 239.99940 * 17 15 13 21 21 C 1.46934 * 118.73680 * 306.39199 * 12 11 10 22 22 C 1.53041 * 109.45731 * 155.00210 * 9 8 6 23 23 C 1.46495 * 120.00363 * 262.51427 * 3 2 1 24 24 H 1.09006 * 110.28996 * 357.87800 * 23 3 2 25 25 C 1.54263 * 110.32165 * 120.00233 * 23 3 2 26 26 C 1.54382 * 105.05948 * 118.89976 * 25 23 3 27 27 N 1.48566 * 104.59520 * 23.84875 * 26 25 23 28 28 C 1.48554 * 104.22223 * 320.52324 * 27 26 25 29 29 H 1.09002 * 109.47115 * 59.99970 * 1 2 3 30 30 H 1.09004 * 109.47135 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47553 * 299.99397 * 1 2 3 32 32 H 1.08997 * 109.47036 * 240.00510 * 2 1 3 33 33 H 1.08993 * 109.47351 * 120.00132 * 2 1 3 34 34 H 0.97000 * 120.00556 * 0.02562 * 8 6 4 35 35 H 1.09001 * 109.46467 * 35.03096 * 9 8 6 36 36 H 1.09000 * 109.50133 * 298.56972 * 10 9 8 37 37 H 1.09006 * 109.49536 * 58.66827 * 10 9 8 38 38 H 1.09002 * 109.58625 * 294.85033 * 11 10 9 39 39 H 1.08993 * 109.70281 * 174.49882 * 11 10 9 40 40 H 0.96997 * 119.99745 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.58663 * 293.81617 * 21 12 11 42 42 H 1.09000 * 109.58300 * 173.39757 * 21 12 11 43 43 H 1.09008 * 109.49727 * 301.32784 * 22 9 8 44 44 H 1.08993 * 109.50238 * 61.39546 * 22 9 8 45 45 H 1.09007 * 110.32138 * 237.78929 * 25 23 3 46 46 H 1.08996 * 110.32614 * 0.02562 * 25 23 3 47 47 H 1.08995 * 110.41444 * 142.63111 * 26 25 23 48 48 H 1.09003 * 110.41096 * 265.07292 * 26 25 23 49 49 H 1.00905 * 110.99422 * 80.08161 * 27 26 25 50 50 H 1.09004 * 110.40485 * 280.69997 * 28 27 26 51 51 H 1.08999 * 110.41030 * 158.26426 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0996 2.0672 1.1573 5 8 2.4668 3.2238 1.1526 6 6 1.7375 1.4034 2.4465 7 8 1.2941 0.2738 2.4436 8 7 1.9033 2.0594 3.6120 9 6 1.5488 1.4085 4.8757 10 6 0.0550 1.6012 5.1470 11 6 -0.3189 0.8900 6.4513 12 7 0.5572 1.3791 7.5246 13 6 0.0277 1.8771 8.6850 14 1 -0.9247 2.3863 8.6692 15 6 0.7149 1.7275 9.8818 16 7 1.6435 0.8018 9.9962 17 14 0.3217 2.8401 11.3299 18 1 -0.7525 3.7910 10.9462 19 1 -0.1331 2.0157 12.4783 20 1 1.5387 3.5985 11.7161 21 6 2.0124 1.3240 7.3288 22 6 2.3601 2.0304 6.0147 23 6 2.4182 2.0168 -1.2578 24 1 2.3247 1.3119 -2.0840 25 6 1.5578 3.2696 -1.5224 26 6 2.5595 4.4437 -1.5597 27 7 3.8583 3.8165 -1.9163 28 6 3.8674 2.5394 -1.1576 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2573 2.9625 3.6143 35 1 1.7715 0.3435 4.8107 36 1 -0.1642 2.6651 5.2370 37 1 -0.5216 1.1787 4.3241 38 1 -0.1858 -0.1853 6.3324 39 1 -1.3579 1.1040 6.7017 40 1 2.1239 0.6976 10.8324 41 1 2.3357 0.2842 7.2815 42 1 2.5118 1.8267 8.1571 43 1 3.4243 1.9134 5.8094 44 1 2.1197 3.0903 6.0961 45 1 1.0434 3.1803 -2.4793 46 1 0.8382 3.4118 -0.7162 47 1 2.2667 5.1693 -2.3184 48 1 2.6234 4.9201 -0.5814 49 1 3.9176 3.6477 -2.9093 50 1 4.1360 2.7179 -0.1163 51 1 4.5593 1.8313 -1.6135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262068263.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:31 Heat of formation + Delta-G solvation = -28.331788 kcal Electronic energy + Delta-G solvation = -30960.880006 eV Core-core repulsion = 26896.293419 eV Total energy + Delta-G solvation = -4064.586588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.25218 -39.46281 -37.79608 -37.37676 -36.01763 -34.37106 -32.15187 -31.06730 -30.22089 -29.67726 -29.52314 -28.49729 -25.69487 -24.44973 -23.17145 -22.48448 -22.29294 -21.82838 -20.91673 -19.86991 -19.03538 -17.75467 -17.05444 -16.93116 -16.56063 -16.02300 -15.95198 -15.35120 -14.83548 -14.54377 -14.47821 -14.20523 -13.90234 -13.86038 -13.62600 -13.56885 -13.32858 -13.02103 -12.91586 -12.67977 -12.45026 -12.25005 -12.10405 -11.76979 -11.63500 -11.50243 -11.43729 -11.23041 -11.18060 -10.87567 -10.85254 -10.75572 -10.51579 -10.32995 -10.10068 -9.87287 -9.65190 -9.39908 -9.23774 -8.88011 -8.69956 -8.49120 -6.68689 -5.84037 -3.27608 1.41733 2.22600 3.19010 3.34854 3.39345 3.44050 3.46505 3.94498 4.25959 4.40819 4.47467 4.49955 4.66157 4.77440 4.96773 5.06098 5.14038 5.18309 5.25477 5.30876 5.32627 5.43895 5.45486 5.50316 5.53708 5.68051 5.72486 5.77047 5.79966 5.91541 6.00415 6.03031 6.18535 6.20576 6.25600 6.39134 6.44531 6.45816 6.51610 6.71038 6.76961 6.85732 6.94307 7.03741 7.21450 7.31975 7.49737 7.72328 7.79781 8.07395 8.42668 9.16634 9.79634 10.39007 11.24767 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.002427 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.343158 B =11534.267816 C =12074.812425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.094 3.906 3 N -0.580 5.580 4 C 0.506 3.494 5 O -0.512 6.512 6 C 0.500 3.500 7 O -0.516 6.516 8 N -0.689 5.689 9 C 0.150 3.850 10 C -0.139 4.139 11 C 0.148 3.852 12 N -0.591 5.591 13 C -0.259 4.259 14 H 0.064 0.936 15 C 0.008 3.992 16 N -0.897 5.897 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.288 1.288 21 C 0.178 3.822 22 C -0.148 4.148 23 C 0.112 3.888 24 H 0.095 0.905 25 C -0.162 4.162 26 C 0.047 3.953 27 N -0.662 5.662 28 C 0.031 3.969 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.407 0.593 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.021 0.979 39 H 0.057 0.943 40 H 0.254 0.746 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.332 0.668 50 H 0.096 0.904 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 1.186 -25.487 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.028 4.028 3 N -0.314 5.314 4 C 0.288 3.712 5 O -0.387 6.387 6 C 0.281 3.719 7 O -0.393 6.393 8 N -0.340 5.340 9 C 0.047 3.953 10 C -0.179 4.179 11 C 0.022 3.978 12 N -0.313 5.313 13 C -0.388 4.388 14 H 0.082 0.918 15 C -0.192 4.192 16 N -0.540 5.540 17 Si 0.728 3.272 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.215 1.215 21 C 0.052 3.948 22 C -0.187 4.187 23 C 0.007 3.993 24 H 0.113 0.887 25 C -0.202 4.202 26 C -0.083 4.083 27 N -0.287 5.287 28 C -0.100 4.100 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.243 0.757 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.147 0.853 50 H 0.114 0.886 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.638 1.362 -24.871 25.048 hybrid contribution -0.795 0.267 0.177 0.857 sum 1.843 1.629 -24.694 24.816 Atomic orbital electron populations 1.22073 0.95337 1.02475 1.01776 1.22155 0.95333 0.80822 1.04473 1.47933 1.63028 1.14838 1.05580 1.20365 0.79084 0.86519 0.85194 1.90744 1.44901 1.16181 1.86879 1.20036 0.80154 0.86488 0.85247 1.90675 1.44138 1.17856 1.86651 1.46235 1.62866 1.19178 1.05759 1.21211 0.95742 0.97786 0.80554 1.22397 0.94524 1.01590 0.99437 1.20870 0.94886 0.95017 0.87072 1.44058 1.00507 1.72020 1.14761 1.19151 1.05949 1.29266 0.84448 0.91785 1.25115 0.99650 0.97223 0.97203 1.70078 1.27253 1.30889 1.25758 0.86294 0.77792 0.80557 0.82545 1.20159 1.21681 1.21479 1.20648 0.84995 0.96938 0.92269 1.22554 0.97943 1.01191 0.97060 1.22701 0.95871 0.95205 0.85524 0.88658 1.23187 0.99467 0.95349 1.02180 1.22982 0.86600 0.95882 1.02792 1.63250 1.33873 1.20528 1.11083 1.23418 0.94103 0.90624 1.01806 0.93529 0.91429 0.91803 0.91168 0.86785 0.75703 0.89552 0.92113 0.92686 0.96135 0.92417 0.93613 0.95812 0.89987 0.92494 0.91845 0.91355 0.90339 0.91239 0.88925 0.85326 0.88605 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.68 37.16 0.36 -1.13 16 2 C 0.09 0.86 5.73 -4.04 -0.02 0.84 16 3 N -0.58 -5.84 2.48 -165.04 -0.41 -6.25 16 4 C 0.51 6.34 6.57 -11.58 -0.08 6.26 16 5 O -0.51 -7.04 12.32 5.50 0.07 -6.97 16 6 C 0.50 7.01 7.57 -11.58 -0.09 6.92 16 7 O -0.52 -7.84 11.36 5.50 0.06 -7.78 16 8 N -0.69 -9.83 5.07 -54.19 -0.27 -10.11 16 9 C 0.15 2.49 2.41 -67.89 -0.16 2.33 16 10 C -0.14 -2.45 5.65 -26.61 -0.15 -2.60 16 11 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 12 N -0.59 -14.45 2.97 -172.31 -0.51 -14.97 16 13 C -0.26 -6.99 9.52 -15.06 -0.14 -7.13 16 14 H 0.06 1.72 7.91 -52.48 -0.41 1.30 16 15 C 0.01 0.21 4.80 -17.43 -0.08 0.13 16 16 N -0.90 -25.69 11.67 55.49 0.65 -25.04 16 17 Si 0.90 21.36 29.60 -169.99 -5.03 16.33 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.18 4.06 5.31 -3.71 -0.02 4.04 16 22 C -0.15 -2.63 5.55 -26.61 -0.15 -2.78 16 23 C 0.11 0.93 3.53 -66.55 -0.24 0.70 16 24 H 0.10 0.59 7.74 -51.93 -0.40 0.19 16 25 C -0.16 -1.37 6.00 -25.35 -0.15 -1.52 16 26 C 0.05 0.42 7.04 -2.18 -0.02 0.41 16 27 N -0.66 -5.81 7.62 -109.66 -0.84 -6.64 16 28 C 0.03 0.28 6.74 -2.19 -0.01 0.27 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.76 6.81 -51.93 -0.35 0.40 16 32 H 0.07 0.47 7.78 -51.93 -0.40 0.07 16 33 H 0.11 1.26 5.53 -51.93 -0.29 0.98 16 34 H 0.41 5.40 8.08 -40.82 -0.33 5.07 16 35 H 0.09 1.56 7.58 -51.93 -0.39 1.16 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 40 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 2.08 6.44 -51.93 -0.33 1.75 16 43 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.08 0.83 7.16 -51.93 -0.37 0.46 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.09 1.07 7.20 -51.93 -0.37 0.69 16 49 H 0.33 2.15 8.92 -39.29 -0.35 1.80 16 50 H 0.10 1.14 6.02 -51.93 -0.31 0.83 16 51 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 389.99 15.07 5.88 5.88 Total: -1.00 -29.82 389.99 -9.91 -39.73 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -8.53 Total: 5.99 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -0.98 Total: 9.81 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -1.38 Total: -63.00 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.13 Total: -14.75 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.82 -9.91 -39.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262068263.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.403 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds