Wall clock time and date at job start Tue Mar 31 2020 21:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46868 * 2 1 4 4 C 1.34774 * 119.99718 * 82.52108 * 3 2 1 5 5 O 1.21352 * 120.00003 * 182.15623 * 4 3 2 6 6 C 1.49457 * 120.00313 * 2.15257 * 4 3 2 7 7 O 1.21348 * 119.99330 * 355.57938 * 6 4 3 8 8 N 1.34771 * 120.00137 * 175.57972 * 6 4 3 9 9 C 1.46503 * 119.99650 * 180.02562 * 8 6 4 10 10 C 1.53040 * 109.45854 * 275.06285 * 9 8 6 11 11 C 1.53195 * 109.31242 * 178.61584 * 10 9 8 12 12 N 1.46925 * 108.77466 * 54.63824 * 11 10 9 13 13 C 1.36934 * 120.62976 * 126.36868 * 12 11 10 14 14 H 1.08004 * 120.00255 * 328.35581 * 13 12 11 15 15 C 1.38817 * 119.99850 * 148.35315 * 13 12 11 16 16 N 1.31617 * 120.00013 * 340.04861 * 15 13 12 17 17 Si 1.86797 * 119.99687 * 160.04628 * 15 13 12 18 18 H 1.48496 * 109.47301 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46941 * 120.00270 * 17 15 13 20 20 H 1.48504 * 109.46908 * 239.99940 * 17 15 13 21 21 C 1.46934 * 118.73680 * 306.39199 * 12 11 10 22 22 C 1.53041 * 109.45731 * 155.00210 * 9 8 6 23 23 C 1.46495 * 120.00363 * 262.51427 * 3 2 1 24 24 H 1.09006 * 110.28996 * 357.87800 * 23 3 2 25 25 C 1.54263 * 110.32165 * 120.00233 * 23 3 2 26 26 C 1.54382 * 105.05948 * 118.89976 * 25 23 3 27 27 N 1.48566 * 104.59520 * 23.84875 * 26 25 23 28 28 C 1.48554 * 104.22223 * 320.52324 * 27 26 25 29 29 H 1.09002 * 109.47115 * 59.99970 * 1 2 3 30 30 H 1.09004 * 109.47135 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47553 * 299.99397 * 1 2 3 32 32 H 1.08997 * 109.47036 * 240.00510 * 2 1 3 33 33 H 1.08993 * 109.47351 * 120.00132 * 2 1 3 34 34 H 0.97000 * 120.00556 * 0.02562 * 8 6 4 35 35 H 1.09001 * 109.46467 * 35.03096 * 9 8 6 36 36 H 1.09000 * 109.50133 * 298.56972 * 10 9 8 37 37 H 1.09006 * 109.49536 * 58.66827 * 10 9 8 38 38 H 1.09002 * 109.58625 * 294.85033 * 11 10 9 39 39 H 1.08993 * 109.70281 * 174.49882 * 11 10 9 40 40 H 0.96997 * 119.99745 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.58663 * 293.81617 * 21 12 11 42 42 H 1.09000 * 109.58300 * 173.39757 * 21 12 11 43 43 H 1.09008 * 109.49727 * 301.32784 * 22 9 8 44 44 H 1.08993 * 109.50238 * 61.39546 * 22 9 8 45 45 H 1.09007 * 110.32138 * 237.78929 * 25 23 3 46 46 H 1.08996 * 110.32614 * 0.02562 * 25 23 3 47 47 H 1.08995 * 110.41444 * 142.63111 * 26 25 23 48 48 H 1.09003 * 110.41096 * 265.07292 * 26 25 23 49 49 H 1.00905 * 110.99422 * 80.08161 * 27 26 25 50 50 H 1.09004 * 110.40485 * 280.69997 * 28 27 26 51 51 H 1.08999 * 110.41030 * 158.26426 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0996 2.0672 1.1573 5 8 2.4668 3.2238 1.1526 6 6 1.7375 1.4034 2.4465 7 8 1.2941 0.2738 2.4436 8 7 1.9033 2.0594 3.6120 9 6 1.5488 1.4085 4.8757 10 6 0.0550 1.6012 5.1470 11 6 -0.3189 0.8900 6.4513 12 7 0.5572 1.3791 7.5246 13 6 0.0277 1.8771 8.6850 14 1 -0.9247 2.3863 8.6692 15 6 0.7149 1.7275 9.8818 16 7 1.6435 0.8018 9.9962 17 14 0.3217 2.8401 11.3299 18 1 -0.7525 3.7910 10.9462 19 1 -0.1331 2.0157 12.4783 20 1 1.5387 3.5985 11.7161 21 6 2.0124 1.3240 7.3288 22 6 2.3601 2.0304 6.0147 23 6 2.4182 2.0168 -1.2578 24 1 2.3247 1.3119 -2.0840 25 6 1.5578 3.2696 -1.5224 26 6 2.5595 4.4437 -1.5597 27 7 3.8583 3.8165 -1.9163 28 6 3.8674 2.5394 -1.1576 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2573 2.9625 3.6143 35 1 1.7715 0.3435 4.8107 36 1 -0.1642 2.6651 5.2370 37 1 -0.5216 1.1787 4.3241 38 1 -0.1858 -0.1853 6.3324 39 1 -1.3579 1.1040 6.7017 40 1 2.1239 0.6976 10.8324 41 1 2.3357 0.2842 7.2815 42 1 2.5118 1.8267 8.1571 43 1 3.4243 1.9134 5.8094 44 1 2.1197 3.0903 6.0961 45 1 1.0434 3.1803 -2.4793 46 1 0.8382 3.4118 -0.7162 47 1 2.2667 5.1693 -2.3184 48 1 2.6234 4.9201 -0.5814 49 1 3.9176 3.6477 -2.9093 50 1 4.1360 2.7179 -0.1163 51 1 4.5593 1.8313 -1.6135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262068263.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:30 Heat of formation + Delta-G solvation = -49.615277 kcal Electronic energy + Delta-G solvation = -30961.802927 eV Core-core repulsion = 26896.293419 eV Total energy + Delta-G solvation = -4065.509509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.20990 -40.54102 -39.07635 -38.46091 -36.99872 -35.81316 -33.92120 -31.85920 -31.79615 -31.30542 -30.30818 -29.29499 -27.26745 -25.74864 -24.24441 -23.94563 -23.34047 -22.94632 -21.94192 -21.24022 -20.29098 -18.92494 -18.46187 -17.89951 -17.55176 -17.13435 -16.93224 -16.80597 -16.30640 -15.76032 -15.54583 -15.42291 -15.28845 -14.90400 -14.81664 -14.71394 -14.47468 -14.28444 -14.14219 -14.05725 -13.64565 -13.22453 -13.09749 -13.02620 -12.80358 -12.67203 -12.58113 -12.45606 -12.40058 -12.35701 -12.10003 -12.01931 -11.92274 -11.88110 -11.66498 -11.56488 -11.35199 -10.57832 -10.35236 -10.22149 -10.01134 -9.46098 -8.69078 -7.90977 -5.37820 0.37469 1.26663 1.45977 1.48788 1.59211 2.13886 2.39508 2.50504 3.23119 3.28281 3.31978 3.64439 3.69323 3.82367 3.83774 3.98232 3.99595 4.11209 4.27321 4.31970 4.39528 4.41988 4.42283 4.54244 4.59696 4.61856 4.69248 4.74621 4.80154 4.91257 4.94504 4.99123 5.00197 5.00668 5.08110 5.11727 5.19034 5.26178 5.28410 5.39291 5.44452 5.46960 5.61682 5.66553 5.69576 5.94745 6.26029 6.38635 6.51439 6.72291 6.97887 7.12778 7.81452 8.36546 9.15968 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.002427 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.343158 B =11534.267816 C =12074.812425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.570 5.570 4 C 0.506 3.494 5 O -0.528 6.528 6 C 0.499 3.501 7 O -0.527 6.527 8 N -0.686 5.686 9 C 0.163 3.837 10 C -0.124 4.124 11 C 0.147 3.853 12 N -0.608 5.608 13 C -0.268 4.268 14 H 0.064 0.936 15 C -0.043 4.043 16 N -0.930 5.930 17 Si 0.964 3.036 18 H -0.267 1.267 19 H -0.292 1.292 20 H -0.288 1.288 21 C 0.184 3.816 22 C -0.132 4.132 23 C 0.111 3.889 24 H 0.130 0.870 25 C -0.156 4.156 26 C 0.049 3.951 27 N -0.671 5.671 28 C 0.033 3.967 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.414 0.586 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.013 0.987 39 H 0.057 0.943 40 H 0.251 0.749 41 H 0.002 0.998 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.087 0.913 48 H 0.060 0.940 49 H 0.348 0.652 50 H 0.063 0.937 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 1.571 -28.420 28.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 N -0.303 5.303 4 C 0.288 3.712 5 O -0.404 6.404 6 C 0.280 3.720 7 O -0.405 6.405 8 N -0.338 5.338 9 C 0.059 3.941 10 C -0.164 4.164 11 C 0.020 3.980 12 N -0.332 5.332 13 C -0.398 4.398 14 H 0.081 0.919 15 C -0.239 4.239 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.191 1.191 19 H -0.219 1.219 20 H -0.215 1.215 21 C 0.057 3.943 22 C -0.171 4.171 23 C 0.007 3.993 24 H 0.148 0.852 25 C -0.196 4.196 26 C -0.081 4.081 27 N -0.298 5.298 28 C -0.098 4.098 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.251 0.749 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.021 0.979 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.073 0.927 47 H 0.105 0.895 48 H 0.078 0.922 49 H 0.165 0.835 50 H 0.081 0.919 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.474 1.746 -27.867 28.031 hybrid contribution -0.761 0.084 1.006 1.264 sum 1.713 1.830 -26.861 26.978 Atomic orbital electron populations 1.22015 0.95397 1.02798 1.00926 1.22204 0.95180 0.80207 1.05232 1.48003 1.61792 1.15057 1.05434 1.20050 0.79457 0.86354 0.85321 1.90754 1.45939 1.16740 1.87010 1.20384 0.79595 0.86300 0.85708 1.90685 1.44421 1.18394 1.86989 1.45991 1.63255 1.19432 1.05096 1.20824 0.94824 0.97111 0.81306 1.22188 0.95355 1.01123 0.97733 1.20953 0.94440 0.94880 0.87679 1.44313 1.01464 1.72396 1.14982 1.19447 1.05979 1.28880 0.85525 0.91869 1.25848 0.99930 0.98467 0.99679 1.70207 1.28520 1.32487 1.26256 0.85280 0.77617 0.78738 0.79212 1.19130 1.21910 1.21467 1.20460 0.84133 0.95864 0.93794 1.22284 0.99403 1.00623 0.94799 1.22948 0.95229 0.95862 0.85270 0.85243 1.23152 0.98857 0.95094 1.02529 1.22878 0.87074 0.96476 1.01671 1.63147 1.33830 1.20561 1.12289 1.23330 0.95020 0.91199 1.00244 0.92183 0.90564 0.94736 0.87664 0.88792 0.74912 0.90794 0.91979 0.91581 0.96890 0.92441 0.93946 0.97950 0.92971 0.90402 0.91425 0.88830 0.92740 0.89485 0.92171 0.83471 0.91883 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.68 71.98 0.70 -1.87 16 2 C 0.09 1.48 5.73 86.38 0.49 1.97 16 3 N -0.57 -10.35 2.48 -794.44 -1.97 -12.32 16 4 C 0.51 12.30 6.57 87.27 0.57 12.87 16 5 O -0.53 -14.39 12.32 -3.25 -0.04 -14.43 16 6 C 0.50 13.70 7.57 87.27 0.66 14.36 16 7 O -0.53 -15.76 11.36 -3.24 -0.04 -15.79 16 8 N -0.69 -19.12 5.07 -443.73 -2.25 -21.37 16 9 C 0.16 5.37 2.41 45.02 0.11 5.48 16 10 C -0.12 -4.30 5.65 30.67 0.17 -4.13 16 11 C 0.15 6.19 6.52 86.36 0.56 6.75 16 12 N -0.61 -30.34 2.97 -699.08 -2.07 -32.41 16 13 C -0.27 -14.70 9.52 84.04 0.80 -13.90 16 14 H 0.06 3.41 7.91 -2.91 -0.02 3.39 16 15 C -0.04 -2.37 4.80 84.86 0.41 -1.97 16 16 N -0.93 -54.73 11.67 21.65 0.25 -54.48 16 17 Si 0.96 44.53 29.60 68.60 2.03 46.56 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 C 0.18 8.62 5.31 86.36 0.46 9.08 16 22 C -0.13 -4.66 5.55 30.67 0.17 -4.49 16 23 C 0.11 1.51 3.53 45.89 0.16 1.67 16 24 H 0.13 0.95 7.74 -2.38 -0.02 0.94 16 25 C -0.16 -2.28 6.00 31.49 0.19 -2.09 16 26 C 0.05 0.80 7.04 86.45 0.61 1.41 16 27 N -0.67 -10.38 7.62 -500.85 -3.82 -14.20 16 28 C 0.03 0.52 6.74 86.45 0.58 1.10 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.03 0.78 6.81 -2.39 -0.02 0.76 16 32 H 0.11 0.98 7.78 -2.39 -0.02 0.96 16 33 H 0.09 1.95 5.53 -2.39 -0.01 1.93 16 34 H 0.41 10.65 8.08 -92.71 -0.75 9.90 16 35 H 0.07 2.66 7.58 -2.39 -0.02 2.65 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 2.38 7.93 -2.39 -0.02 2.37 16 40 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.05 2.74 6.44 -2.39 -0.02 2.72 16 43 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 44 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.05 1.08 7.16 -2.39 -0.02 1.07 16 47 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.06 1.39 7.20 -2.39 -0.02 1.37 16 49 H 0.35 3.45 8.92 -89.69 -0.80 2.65 16 50 H 0.06 1.46 6.02 -2.38 -0.01 1.44 16 51 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -66.42 389.99 -1.86 -68.28 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -0.60 Total: 23.92 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 6.65 Total: 26.26 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -9.86 Total: -134.78 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.08 Total: -30.23 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.42 -1.86 -68.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262068263.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.666 kcal (2) G-P(sol) polarization free energy of solvation -66.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds