Wall clock time and date at job start Tue Mar 31 2020 21:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00291 * 2 1 4 4 H 1.08997 * 109.47210 * 0.02562 * 3 2 1 5 5 O 1.42909 * 109.47343 * 239.99972 * 3 2 1 6 6 C 1.50700 * 109.47138 * 119.99946 * 3 2 1 7 7 N 1.30303 * 126.34722 * 75.15666 * 6 3 2 8 8 N 1.28529 * 110.05521 * 180.31261 * 7 6 3 9 9 C 1.31215 * 109.85744 * 359.71842 * 8 7 6 10 10 N 1.38581 * 126.47188 * 180.02562 * 9 8 7 11 11 C 1.46894 * 110.99861 * 294.05746 * 10 9 8 12 12 C 1.46900 * 110.99814 * 58.01044 * 10 9 8 13 13 H 1.09001 * 109.46928 * 299.99818 * 12 10 9 14 14 C 1.53001 * 109.47272 * 60.00154 * 12 10 9 15 15 C 1.50705 * 109.46863 * 180.02562 * 12 10 9 16 16 H 1.08001 * 120.00160 * 0.02562 * 15 12 10 17 17 C 1.37876 * 119.99812 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00465 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99823 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47198 * 59.99949 * 19 17 15 21 21 H 1.48500 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46961 * 300.00252 * 19 17 15 23 23 N 1.36453 * 107.05420 * 359.97438 * 9 8 7 24 24 C 1.46500 * 127.13558 * 180.02562 * 23 9 8 25 25 C 1.52993 * 109.47291 * 93.83982 * 24 23 9 26 26 C 1.53006 * 109.47552 * 180.02562 * 25 24 23 27 27 O 1.42894 * 109.47020 * 180.02562 * 26 25 24 28 28 C 1.42904 * 113.99837 * 179.97438 * 27 26 25 29 29 C 1.52998 * 109.47159 * 179.97438 * 28 27 26 30 30 H 1.07997 * 119.99378 * 0.02562 * 1 2 3 31 31 H 1.07992 * 120.00418 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99518 * 180.02562 * 2 1 3 33 33 H 0.96698 * 113.99495 * 300.00274 * 5 3 2 34 34 H 1.08998 * 109.47617 * 66.32395 * 11 10 9 35 35 H 1.09001 * 109.47181 * 186.32630 * 11 10 9 36 36 H 1.09005 * 109.47195 * 306.32152 * 11 10 9 37 37 H 1.09000 * 109.47024 * 299.99508 * 14 12 10 38 38 H 1.08998 * 109.46691 * 59.99981 * 14 12 10 39 39 H 1.09002 * 109.47092 * 179.97438 * 14 12 10 40 40 H 0.96998 * 120.00635 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.47379 * 333.83651 * 24 23 9 42 42 H 1.09005 * 109.47285 * 213.84080 * 24 23 9 43 43 H 1.09005 * 109.47036 * 300.00250 * 25 24 23 44 44 H 1.09004 * 109.47179 * 59.99546 * 25 24 23 45 45 H 1.08997 * 109.46646 * 299.99615 * 26 25 24 46 46 H 1.08996 * 109.46966 * 60.00011 * 26 25 24 47 47 H 1.08998 * 109.47188 * 299.99719 * 28 27 26 48 48 H 1.09007 * 109.46879 * 60.00095 * 28 27 26 49 49 H 1.08996 * 109.47046 * 59.99968 * 29 28 27 50 50 H 1.09001 * 109.47368 * 180.02562 * 29 28 27 51 51 H 1.09008 * 109.47060 * 300.00195 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1335 0.0005 5 8 2.8852 1.3807 -1.1668 6 6 2.9300 1.3848 1.2305 7 7 4.0468 0.7445 1.4314 8 7 4.5216 1.0388 2.5890 9 6 3.7296 1.8944 3.1911 10 7 3.9132 2.4408 4.4513 11 6 3.8157 1.4086 5.4919 12 6 5.1953 3.1529 4.5346 13 1 6.0106 2.4581 4.3328 14 6 5.2198 4.2818 3.5022 15 6 5.3596 3.7316 5.9164 16 1 4.5889 3.5847 6.6586 17 6 6.4944 4.4477 6.2334 18 7 7.4332 4.6263 5.3299 19 14 6.6984 5.1644 7.9464 20 1 6.6746 4.0681 8.9477 21 1 7.9944 5.8844 8.0306 22 1 5.5879 6.1110 8.2224 23 7 2.6917 2.1452 2.3416 24 6 1.5544 3.0389 2.5744 25 6 1.8614 4.4184 1.9884 26 6 0.6739 5.3520 2.2321 27 8 0.9606 6.6402 1.6842 28 6 -0.0904 7.5928 1.8584 29 6 0.3239 8.9284 1.2375 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5400 -0.9352 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 3.5405 0.6728 -1.2329 34 1 4.6483 0.7122 5.3921 35 1 3.8512 1.8788 6.4746 36 1 2.8752 0.8687 5.3813 37 1 5.1012 3.8628 2.5029 38 1 4.4045 4.9765 3.7041 39 1 6.1709 4.8105 3.5643 40 1 8.2313 5.1304 5.5527 41 1 1.3776 3.1305 3.6461 42 1 0.6660 2.6293 2.0934 43 1 2.7498 4.8279 2.4694 44 1 2.0382 4.3268 0.9167 45 1 -0.2145 4.9426 1.7513 46 1 0.4977 5.4435 3.3038 47 1 -0.9946 7.2296 1.3700 48 1 -0.2826 7.7312 2.9224 49 1 0.5164 8.7902 0.1736 50 1 -0.4775 9.6551 1.3707 51 1 1.2281 9.2914 1.7263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263368586.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:55 Heat of formation + Delta-G solvation = 12.256931 kcal Electronic energy + Delta-G solvation = -31041.887656 eV Core-core repulsion = 26979.061127 eV Total energy + Delta-G solvation = -4062.826529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.63696 -38.29048 -37.85457 -36.87379 -35.67511 -33.53618 -32.93769 -32.36589 -30.57905 -29.90904 -29.20483 -26.57352 -25.74961 -25.36116 -24.34942 -22.94687 -22.16600 -21.90288 -20.87246 -20.37215 -19.45922 -17.41598 -16.97999 -16.59132 -16.54872 -16.33738 -15.88081 -15.55902 -15.30537 -14.74537 -14.70829 -14.47341 -14.26577 -13.76112 -13.40253 -13.16134 -13.15900 -12.93950 -12.69653 -12.38362 -12.33505 -11.99550 -11.85151 -11.80165 -11.58665 -11.30016 -11.20745 -11.09978 -10.99465 -10.93886 -10.79563 -10.52745 -10.31257 -10.27292 -10.11935 -10.09435 -9.86727 -9.81564 -9.72233 -9.11676 -8.54421 -8.51138 -7.76382 -6.07936 -4.15128 1.76877 2.12847 2.56073 3.24508 3.28281 3.33564 3.34830 3.51992 4.27649 4.31473 4.35180 4.54304 4.55699 4.64214 4.75356 4.85599 4.89115 4.96635 5.02745 5.10139 5.15731 5.17833 5.24215 5.27838 5.35515 5.53491 5.54463 5.68146 5.72554 5.84071 5.87156 5.94697 6.10317 6.16525 6.24190 6.29332 6.36333 6.40095 6.56461 6.74783 6.84342 6.95105 7.06289 7.11891 7.35952 7.42451 7.63680 7.71541 7.90259 8.17225 8.42038 8.87660 9.14431 9.49748 10.98862 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007452 B = 0.004406 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3756.649352 B = 6353.533974 C = 9106.863191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.179 4.179 3 C 0.236 3.764 4 H 0.112 0.888 5 O -0.540 6.540 6 C 0.124 3.876 7 N -0.280 5.280 8 N -0.316 5.316 9 C 0.391 3.609 10 N -0.473 5.473 11 C 0.050 3.950 12 C 0.227 3.773 13 H 0.021 0.979 14 C -0.129 4.129 15 C -0.513 4.513 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.461 5.461 24 C 0.119 3.881 25 C -0.141 4.141 26 C 0.072 3.928 27 O -0.385 6.385 28 C 0.058 3.942 29 C -0.153 4.153 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.389 0.611 34 H 0.036 0.964 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.002 0.998 38 H 0.033 0.967 39 H 0.091 0.909 40 H 0.264 0.736 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.046 0.954 48 H 0.049 0.951 49 H 0.062 0.938 50 H 0.069 0.931 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.659 -1.169 -8.458 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.198 4.198 3 C 0.174 3.826 4 H 0.129 0.871 5 O -0.345 6.345 6 C -0.144 4.144 7 N -0.122 5.122 8 N -0.159 5.159 9 C 0.035 3.965 10 N -0.201 5.201 11 C -0.097 4.097 12 C 0.122 3.878 13 H 0.039 0.961 14 C -0.188 4.188 15 C -0.552 4.552 16 H 0.084 0.916 17 C -0.139 4.139 18 N -0.525 5.525 19 Si 0.728 3.272 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.155 5.155 24 C -0.004 4.004 25 C -0.179 4.179 26 C -0.006 4.006 27 O -0.305 6.305 28 C -0.019 4.019 29 C -0.210 4.210 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.238 0.762 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.021 0.979 38 H 0.052 0.948 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.081 0.919 50 H 0.088 0.912 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.836 -1.068 -8.853 19.941 hybrid contribution -0.249 0.290 1.371 1.423 sum -18.085 -0.777 -7.482 19.587 Atomic orbital electron populations 1.23883 0.95498 1.02358 0.98811 1.23497 0.96604 0.98691 1.01057 1.18981 0.88425 0.96194 0.78981 0.87069 1.86589 1.51808 1.55566 1.40496 1.25248 0.99262 0.97638 0.92264 1.73814 1.06405 1.21087 1.10917 1.74713 1.23698 1.15642 1.01871 1.22892 0.85857 0.94623 0.93091 1.59305 1.40600 1.24797 0.95393 1.22203 0.99140 0.92774 0.95590 1.19427 0.80980 0.91015 0.96331 0.96076 1.21831 1.03210 0.99338 0.94380 1.20989 1.04117 1.34325 0.95738 0.91642 1.24905 0.95577 0.95961 0.97420 1.69886 1.08527 1.40527 1.33521 0.86522 0.77342 0.79221 0.84090 1.20181 1.21256 1.20211 1.46269 1.20679 1.34323 1.14276 1.21608 0.86092 0.88696 1.04053 1.21922 1.00259 0.92989 1.02706 1.22275 0.96752 0.83617 0.97933 1.87924 1.41750 1.20763 1.80032 1.22451 0.90037 0.89782 0.99607 1.21747 1.02403 0.95036 1.01783 0.88288 0.87693 0.86135 0.76174 0.94572 0.89156 0.93897 0.97908 0.94756 0.89000 0.92637 0.87459 0.89653 0.88674 0.90680 0.93446 0.92626 0.93606 0.93298 0.91885 0.91208 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 14.32 29.01 0.42 -0.93 16 2 C -0.18 -1.82 9.10 -36.03 -0.33 -2.15 16 3 C 0.24 2.90 3.70 -29.04 -0.11 2.79 16 4 H 0.11 1.19 7.01 -51.93 -0.36 0.83 16 5 O -0.54 -7.02 13.32 -35.23 -0.47 -7.49 16 6 C 0.12 2.02 6.91 -154.02 -1.07 0.95 16 7 N -0.28 -5.52 12.10 32.99 0.40 -5.12 16 8 N -0.32 -7.09 12.10 30.31 0.37 -6.72 16 9 C 0.39 8.04 5.04 -318.88 -1.61 6.43 16 10 N -0.47 -10.15 4.65 -176.08 -0.82 -10.97 16 11 C 0.05 0.98 9.14 60.06 0.55 1.53 16 12 C 0.23 5.75 1.99 -68.86 -0.14 5.61 16 13 H 0.02 0.62 8.07 -51.93 -0.42 0.21 16 14 C -0.13 -3.26 8.51 37.16 0.32 -2.94 16 15 C -0.51 -13.52 7.95 -34.44 -0.27 -13.79 16 16 H 0.07 1.66 6.39 -52.49 -0.34 1.33 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 19 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 N -0.46 -7.69 2.81 -114.09 -0.32 -8.01 16 24 C 0.12 1.50 5.75 -4.05 -0.02 1.48 16 25 C -0.14 -1.87 5.91 -26.73 -0.16 -2.03 16 26 C 0.07 0.79 5.94 37.16 0.22 1.01 16 27 O -0.39 -5.05 10.34 -35.23 -0.36 -5.42 16 28 C 0.06 0.56 6.66 37.16 0.25 0.81 16 29 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 30 H 0.10 0.66 7.83 -52.49 -0.41 0.25 16 31 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.39 4.29 8.96 45.56 0.41 4.70 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.73 6.32 -51.93 -0.33 1.40 16 36 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.00 0.05 7.22 -51.93 -0.38 -0.33 16 38 H 0.03 0.82 7.04 -51.93 -0.37 0.46 16 39 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.09 0.77 7.68 -51.93 -0.40 0.37 16 43 H 0.09 1.63 6.65 -51.93 -0.35 1.28 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 417.18 15.07 6.29 6.29 Total: -1.00 -32.63 417.18 -8.85 -41.49 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.88 Total: 5.29 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.66 Total: -0.57 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.25 Total: -55.32 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.83 Total: -12.90 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.63 -8.85 -41.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263368586.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.745 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds