Wall clock time and date at job start Tue Mar 31 2020 21:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00291 * 2 1 4 4 H 1.08997 * 109.47210 * 0.02562 * 3 2 1 5 5 O 1.42909 * 109.47343 * 239.99972 * 3 2 1 6 6 C 1.50700 * 109.47138 * 119.99946 * 3 2 1 7 7 N 1.30303 * 126.34722 * 75.15666 * 6 3 2 8 8 N 1.28529 * 110.05521 * 180.31261 * 7 6 3 9 9 C 1.31215 * 109.85744 * 359.71842 * 8 7 6 10 10 N 1.38581 * 126.47188 * 180.02562 * 9 8 7 11 11 C 1.46894 * 110.99861 * 294.05746 * 10 9 8 12 12 C 1.46900 * 110.99814 * 58.01044 * 10 9 8 13 13 H 1.09001 * 109.46928 * 299.99818 * 12 10 9 14 14 C 1.53001 * 109.47272 * 60.00154 * 12 10 9 15 15 C 1.50705 * 109.46863 * 180.02562 * 12 10 9 16 16 H 1.08001 * 120.00160 * 0.02562 * 15 12 10 17 17 C 1.37876 * 119.99812 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00465 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99823 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47198 * 59.99949 * 19 17 15 21 21 H 1.48500 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46961 * 300.00252 * 19 17 15 23 23 N 1.36453 * 107.05420 * 359.97438 * 9 8 7 24 24 C 1.46500 * 127.13558 * 180.02562 * 23 9 8 25 25 C 1.52993 * 109.47291 * 93.83982 * 24 23 9 26 26 C 1.53006 * 109.47552 * 180.02562 * 25 24 23 27 27 O 1.42894 * 109.47020 * 180.02562 * 26 25 24 28 28 C 1.42904 * 113.99837 * 179.97438 * 27 26 25 29 29 C 1.52998 * 109.47159 * 179.97438 * 28 27 26 30 30 H 1.07997 * 119.99378 * 0.02562 * 1 2 3 31 31 H 1.07992 * 120.00418 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99518 * 180.02562 * 2 1 3 33 33 H 0.96698 * 113.99495 * 300.00274 * 5 3 2 34 34 H 1.08998 * 109.47617 * 66.32395 * 11 10 9 35 35 H 1.09001 * 109.47181 * 186.32630 * 11 10 9 36 36 H 1.09005 * 109.47195 * 306.32152 * 11 10 9 37 37 H 1.09000 * 109.47024 * 299.99508 * 14 12 10 38 38 H 1.08998 * 109.46691 * 59.99981 * 14 12 10 39 39 H 1.09002 * 109.47092 * 179.97438 * 14 12 10 40 40 H 0.96998 * 120.00635 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.47379 * 333.83651 * 24 23 9 42 42 H 1.09005 * 109.47285 * 213.84080 * 24 23 9 43 43 H 1.09005 * 109.47036 * 300.00250 * 25 24 23 44 44 H 1.09004 * 109.47179 * 59.99546 * 25 24 23 45 45 H 1.08997 * 109.46646 * 299.99615 * 26 25 24 46 46 H 1.08996 * 109.46966 * 60.00011 * 26 25 24 47 47 H 1.08998 * 109.47188 * 299.99719 * 28 27 26 48 48 H 1.09007 * 109.46879 * 60.00095 * 28 27 26 49 49 H 1.08996 * 109.47046 * 59.99968 * 29 28 27 50 50 H 1.09001 * 109.47368 * 180.02562 * 29 28 27 51 51 H 1.09008 * 109.47060 * 300.00195 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1335 0.0005 5 8 2.8852 1.3807 -1.1668 6 6 2.9300 1.3848 1.2305 7 7 4.0468 0.7445 1.4314 8 7 4.5216 1.0388 2.5890 9 6 3.7296 1.8944 3.1911 10 7 3.9132 2.4408 4.4513 11 6 3.8157 1.4086 5.4919 12 6 5.1953 3.1529 4.5346 13 1 6.0106 2.4581 4.3328 14 6 5.2198 4.2818 3.5022 15 6 5.3596 3.7316 5.9164 16 1 4.5889 3.5847 6.6586 17 6 6.4944 4.4477 6.2334 18 7 7.4332 4.6263 5.3299 19 14 6.6984 5.1644 7.9464 20 1 6.6746 4.0681 8.9477 21 1 7.9944 5.8844 8.0306 22 1 5.5879 6.1110 8.2224 23 7 2.6917 2.1452 2.3416 24 6 1.5544 3.0389 2.5744 25 6 1.8614 4.4184 1.9884 26 6 0.6739 5.3520 2.2321 27 8 0.9606 6.6402 1.6842 28 6 -0.0904 7.5928 1.8584 29 6 0.3239 8.9284 1.2375 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5400 -0.9352 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 3.5405 0.6728 -1.2329 34 1 4.6483 0.7122 5.3921 35 1 3.8512 1.8788 6.4746 36 1 2.8752 0.8687 5.3813 37 1 5.1012 3.8628 2.5029 38 1 4.4045 4.9765 3.7041 39 1 6.1709 4.8105 3.5643 40 1 8.2313 5.1304 5.5527 41 1 1.3776 3.1305 3.6461 42 1 0.6660 2.6293 2.0934 43 1 2.7498 4.8279 2.4694 44 1 2.0382 4.3268 0.9167 45 1 -0.2145 4.9426 1.7513 46 1 0.4977 5.4435 3.3038 47 1 -0.9946 7.2296 1.3700 48 1 -0.2826 7.7312 2.9224 49 1 0.5164 8.7902 0.1736 50 1 -0.4775 9.6551 1.3707 51 1 1.2281 9.2914 1.7263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263368586.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:54 Heat of formation + Delta-G solvation = -10.274439 kcal Electronic energy + Delta-G solvation = -31042.864689 eV Core-core repulsion = 26979.061127 eV Total energy + Delta-G solvation = -4063.803562 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.07121 -39.16404 -39.11220 -38.36424 -36.85586 -34.92912 -34.32257 -33.38870 -31.61754 -31.47283 -30.87894 -27.97072 -27.07307 -26.77434 -26.08281 -23.67966 -23.67413 -23.10899 -22.04570 -21.47332 -20.91778 -18.64309 -18.42539 -17.90613 -17.64262 -17.37017 -17.29973 -16.80225 -16.62968 -16.41830 -15.63382 -15.56307 -15.51772 -15.27148 -15.00014 -14.25903 -14.12202 -14.03433 -13.91186 -13.79639 -13.46077 -13.16085 -13.09813 -12.99291 -12.81642 -12.71754 -12.67707 -12.53126 -12.44475 -12.25396 -12.21158 -12.08136 -11.94976 -11.83442 -11.62284 -11.44264 -11.14055 -11.10284 -10.60281 -10.58592 -10.52935 -10.02612 -9.58243 -8.15082 -6.29966 0.60991 1.11248 1.34677 1.45230 1.47265 1.54858 1.77071 2.40551 2.66518 2.98179 3.16444 3.23319 3.39886 3.58828 3.73051 3.84802 3.96849 4.01991 4.08342 4.15888 4.20568 4.28695 4.33445 4.41070 4.46231 4.51730 4.52473 4.59839 4.69020 4.74508 4.77117 4.82229 4.86467 4.91559 5.00722 5.02931 5.04831 5.07978 5.14928 5.27484 5.34031 5.49421 5.60086 5.61616 5.66228 5.84048 5.94137 6.11648 6.30896 6.49167 6.58191 6.80363 7.39440 7.67353 8.91983 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007452 B = 0.004406 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3756.649352 B = 6353.533974 C = 9106.863191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.208 4.208 3 C 0.239 3.761 4 H 0.135 0.865 5 O -0.551 6.551 6 C 0.148 3.852 7 N -0.315 5.315 8 N -0.361 5.361 9 C 0.370 3.630 10 N -0.464 5.464 11 C 0.054 3.946 12 C 0.238 3.762 13 H -0.030 1.030 14 C -0.105 4.105 15 C -0.522 4.522 16 H 0.076 0.924 17 C 0.013 3.987 18 N -0.922 5.922 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.266 1.266 23 N -0.455 5.455 24 C 0.113 3.887 25 C -0.132 4.132 26 C 0.074 3.926 27 O -0.420 6.420 28 C 0.051 3.949 29 C -0.153 4.153 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.112 0.888 33 H 0.394 0.606 34 H 0.014 0.986 35 H 0.092 0.908 36 H 0.074 0.926 37 H -0.006 1.006 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.263 0.737 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.054 0.946 49 H 0.058 0.942 50 H 0.094 0.906 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.864 -0.874 -8.311 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.227 4.227 3 C 0.177 3.823 4 H 0.153 0.847 5 O -0.357 6.357 6 C -0.122 4.122 7 N -0.156 5.156 8 N -0.204 5.204 9 C 0.013 3.987 10 N -0.191 5.191 11 C -0.094 4.094 12 C 0.133 3.867 13 H -0.012 1.012 14 C -0.164 4.164 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.794 3.206 20 H -0.192 1.192 21 H -0.215 1.215 22 H -0.191 1.191 23 N -0.149 5.149 24 C -0.008 4.008 25 C -0.171 4.171 26 C -0.003 4.003 27 O -0.341 6.341 28 C -0.025 4.025 29 C -0.210 4.210 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.130 0.870 33 H 0.245 0.755 34 H 0.033 0.967 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.013 0.987 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.128 0.872 42 H 0.153 0.847 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.112 0.888 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.079 -0.784 -8.711 23.749 hybrid contribution 0.957 0.163 1.185 1.532 sum -21.122 -0.621 -7.526 22.432 Atomic orbital electron populations 1.24217 0.94519 1.04265 0.94461 1.23275 0.97362 0.97128 1.04985 1.19354 0.87812 0.98481 0.76624 0.84711 1.86561 1.52279 1.56224 1.40642 1.26238 0.98141 0.95038 0.92742 1.73721 1.08419 1.23093 1.10387 1.74589 1.25394 1.17082 1.03320 1.22758 0.87294 0.95466 0.93212 1.59204 1.37836 1.25466 0.96586 1.22230 0.99884 0.92143 0.95116 1.19052 0.81490 0.90107 0.96095 1.01204 1.21538 1.01707 0.99090 0.94032 1.21294 1.04457 1.34052 0.96242 0.90564 1.25801 0.95189 0.96311 1.01358 1.70053 1.09054 1.41343 1.35680 0.85436 0.77278 0.78640 0.79245 1.19164 1.21464 1.19065 1.46445 1.20695 1.34363 1.13364 1.22005 0.86079 0.87808 1.04944 1.21800 0.99688 0.93885 1.01725 1.22315 0.96564 0.82723 0.98660 1.87885 1.43739 1.21966 1.80462 1.22667 0.90054 0.89400 1.00356 1.21792 1.02573 0.95454 1.01229 0.86100 0.85966 0.86990 0.75525 0.96711 0.88944 0.90746 0.98694 0.94156 0.91784 0.92794 0.87208 0.84690 0.93326 0.91204 0.89676 0.92141 0.91308 0.92748 0.92302 0.88762 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 14.32 67.78 0.97 -0.60 16 2 C -0.21 -3.66 9.10 25.64 0.23 -3.43 16 3 C 0.24 5.34 3.70 29.10 0.11 5.44 16 4 H 0.14 2.34 7.01 -2.39 -0.02 2.32 16 5 O -0.55 -13.74 13.32 -148.98 -1.98 -15.72 16 6 C 0.15 4.72 6.91 137.64 0.95 5.67 16 7 N -0.32 -12.77 12.10 -49.54 -0.60 -13.37 16 8 N -0.36 -16.90 12.10 -58.01 -0.70 -17.60 16 9 C 0.37 15.55 5.04 260.11 1.31 16.86 16 10 N -0.46 -20.35 4.65 -711.00 -3.31 -23.65 16 11 C 0.05 2.09 9.14 127.69 1.17 3.26 16 12 C 0.24 12.65 1.99 44.17 0.09 12.73 16 13 H -0.03 -1.86 8.07 -2.39 -0.02 -1.88 16 14 C -0.11 -5.59 8.51 71.98 0.61 -4.97 16 15 C -0.52 -28.07 7.95 25.60 0.20 -27.86 16 16 H 0.08 3.86 6.39 -2.91 -0.02 3.84 16 17 C 0.01 0.69 5.30 84.65 0.45 1.14 16 18 N -0.92 -54.25 11.32 21.45 0.24 -54.00 16 19 Si 0.97 42.75 29.54 68.60 2.03 44.78 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 N -0.46 -14.82 2.81 -514.85 -1.45 -16.26 16 24 C 0.11 2.56 5.75 86.38 0.50 3.05 16 25 C -0.13 -3.36 5.91 30.59 0.18 -3.18 16 26 C 0.07 1.44 5.94 71.98 0.43 1.87 16 27 O -0.42 -10.38 10.34 -148.98 -1.54 -11.92 16 28 C 0.05 0.88 6.66 71.98 0.48 1.36 16 29 C -0.15 -2.48 10.28 71.98 0.74 -1.74 16 30 H 0.12 0.87 7.83 -2.91 -0.02 0.85 16 31 H 0.12 1.03 8.06 -2.91 -0.02 1.00 16 32 H 0.11 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.39 8.70 8.96 -74.06 -0.66 8.04 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 35 H 0.09 3.52 6.32 -2.39 -0.02 3.51 16 36 H 0.07 2.41 8.10 -2.38 -0.02 2.39 16 37 H -0.01 -0.32 7.22 -2.39 -0.02 -0.34 16 38 H 0.04 2.02 7.04 -2.39 -0.02 2.01 16 39 H 0.06 3.74 6.07 -2.39 -0.01 3.73 16 40 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 42 H 0.14 1.73 7.68 -2.38 -0.02 1.72 16 43 H 0.05 1.69 6.65 -2.38 -0.02 1.68 16 44 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.05 0.93 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -76.16 417.18 1.36 -74.81 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.25 Total: 23.35 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 8.42 Total: 9.60 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -5.81 Total: -124.90 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -3.52 Total: -27.64 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -76.16 1.36 -74.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263368586.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.532 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds