Wall clock time and date at job start Tue Mar 31 2020 22:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47849 * 110.99798 * 2 1 4 4 C 1.54909 * 104.79265 * 146.36323 * 3 2 1 5 5 C 1.55137 * 101.65430 * 322.92829 * 4 3 2 6 6 H 1.09004 * 110.85265 * 277.19973 * 5 4 3 7 7 C 1.52998 * 110.70258 * 154.03899 * 5 4 3 8 8 C 1.50701 * 109.47057 * 179.97438 * 7 5 4 9 9 O 1.21286 * 119.99961 * 359.97438 * 8 7 5 10 10 N 1.34774 * 120.00217 * 179.97438 * 8 7 5 11 11 C 1.47015 * 125.65023 * 359.97438 * 10 8 7 12 12 C 1.54322 * 107.27642 * 178.96091 * 11 10 8 13 13 C 1.55160 * 102.93989 * 337.80681 * 12 11 10 14 14 H 1.08999 * 111.00750 * 277.38903 * 13 12 11 15 15 N 1.46895 * 111.00380 * 153.57191 * 13 12 11 16 16 C 1.46906 * 110.99789 * 86.45490 * 15 13 12 17 17 C 1.50703 * 109.47109 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47204 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00140 * 24 22 20 27 27 H 1.48498 * 109.47371 * 240.00040 * 24 22 20 28 28 C 1.47430 * 125.64733 * 180.02562 * 10 8 7 29 29 C 1.47443 * 111.00020 * 120.84155 * 2 1 3 30 30 H 1.09002 * 109.46915 * 299.15888 * 1 2 3 31 31 H 1.08996 * 109.46760 * 59.15913 * 1 2 3 32 32 H 1.09000 * 109.47312 * 179.16077 * 1 2 3 33 33 H 1.09003 * 110.37039 * 265.18948 * 3 2 1 34 34 H 1.09002 * 110.37388 * 27.42127 * 3 2 1 35 35 H 1.09006 * 110.98423 * 204.83390 * 4 3 2 36 36 H 1.09002 * 110.98852 * 81.02646 * 4 3 2 37 37 H 1.08997 * 109.47546 * 59.94440 * 7 5 4 38 38 H 1.09003 * 109.47466 * 299.94405 * 7 5 4 39 39 H 1.09009 * 109.88231 * 59.54133 * 11 10 8 40 40 H 1.09000 * 109.88540 * 298.38292 * 11 10 8 41 41 H 1.08997 * 110.72084 * 219.44484 * 12 11 10 42 42 H 1.08998 * 110.87318 * 96.23697 * 12 11 10 43 43 H 1.00899 * 111.00672 * 322.50434 * 15 13 12 44 44 H 1.08992 * 109.47459 * 299.99826 * 16 15 13 45 45 H 1.09004 * 109.47040 * 59.99976 * 16 15 13 46 46 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 48 48 H 1.08993 * 110.36971 * 85.26997 * 28 10 8 49 49 H 1.08999 * 110.36439 * 322.94479 * 28 10 8 50 50 H 1.08994 * 109.88840 * 117.33816 * 29 2 1 51 51 H 1.09000 * 109.88886 * 356.14588 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 1 2.3753 0.7725 2.7411 7 6 4.1570 -0.4337 2.4680 8 6 3.7482 -1.4162 3.5351 9 8 2.5793 -1.5320 3.8371 10 7 4.6815 -2.1662 4.1539 11 6 6.1267 -2.1278 3.8868 12 6 6.7970 -3.1334 4.8465 13 6 5.7567 -3.2689 5.9898 14 1 5.8571 -2.4551 6.7079 15 7 5.8735 -4.5728 6.6561 16 6 6.8797 -4.5292 7.7255 17 6 6.9708 -5.8813 8.3850 18 8 6.2670 -6.7917 8.0015 19 7 7.8342 -6.0788 9.4008 20 6 7.9174 -7.3089 10.0004 21 1 7.2908 -8.1196 9.6590 22 6 8.8079 -7.5125 11.0474 23 7 9.5707 -6.5263 11.4625 24 14 8.9208 -9.1884 11.8648 25 1 7.9639 -10.1208 11.2166 26 1 10.3010 -9.7173 11.7210 27 1 8.5878 -9.0596 13.3062 28 6 4.4222 -3.1617 5.2100 29 6 1.9974 -0.7057 1.1818 30 1 -0.3633 0.5007 0.8975 31 1 -0.3633 0.5268 -0.8823 32 1 -0.3634 -1.0275 -0.0151 33 1 2.2148 1.7038 -1.0183 34 1 1.2880 2.0596 0.4706 35 1 3.5495 2.2721 1.2640 36 1 4.1302 0.9283 0.2243 37 1 4.8442 0.2986 2.8918 38 1 4.6498 -0.9659 1.6543 39 1 6.5116 -1.1250 4.0726 40 1 6.3206 -2.4159 2.8536 41 1 7.7379 -2.7355 5.2265 42 1 6.9563 -4.0929 4.3545 43 1 6.0844 -5.3014 5.9907 44 1 7.8487 -4.2652 7.3022 45 1 6.5911 -3.7830 8.4658 46 1 8.3972 -5.3507 9.7073 47 1 10.1921 -6.6684 12.1937 48 1 4.1620 -4.1237 4.7688 49 1 3.6247 -2.8172 5.8684 50 1 2.5697 -1.5784 0.8675 51 1 1.1756 -1.0119 1.8291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265454051.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:50 Heat of formation + Delta-G solvation = -88.936625 kcal Electronic energy + Delta-G solvation = -28779.121154 eV Core-core repulsion = 24711.906543 eV Total energy + Delta-G solvation = -4067.214610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33799 -40.26723 -39.81139 -38.64873 -36.19525 -35.54952 -34.32164 -33.26860 -31.80092 -30.87116 -29.96805 -28.47379 -27.54070 -26.11856 -25.35771 -23.98455 -22.01116 -21.97638 -21.44174 -21.07725 -20.04487 -19.91947 -18.24139 -17.72371 -17.44403 -17.37452 -16.80413 -16.39211 -16.29551 -16.03333 -15.92135 -15.57283 -15.26511 -14.97851 -14.62659 -14.42298 -14.27433 -14.08639 -14.05639 -13.86435 -13.63793 -13.56150 -13.48142 -13.11738 -12.94045 -12.75077 -12.63387 -12.54151 -12.41876 -12.37025 -12.27741 -12.12174 -12.10249 -11.78234 -11.73711 -11.59911 -11.51201 -10.85517 -10.36041 -10.00973 -9.68640 -9.33296 -9.30979 -8.46825 -5.95212 1.36719 1.42520 1.56223 1.62888 1.90144 2.05752 2.29890 2.91697 3.07469 3.20768 3.34887 3.46656 3.64649 3.67587 3.72791 3.87715 3.98912 4.02734 4.25648 4.30448 4.34699 4.37841 4.38791 4.44314 4.49007 4.51051 4.53035 4.60021 4.63382 4.69461 4.79117 4.82684 4.84543 4.87870 4.92814 4.96940 5.04601 5.10376 5.11088 5.14817 5.24817 5.35867 5.41753 5.88318 5.96828 6.07574 6.09106 6.35654 6.52857 6.60576 7.13282 7.15105 7.56846 8.12455 8.70614 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.040888 B = 0.001540 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.625951 B =18178.342842 C =18573.378088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.550 5.550 3 C 0.035 3.965 4 C -0.115 4.115 5 C -0.092 4.092 6 H 0.065 0.935 7 C -0.114 4.114 8 C 0.518 3.482 9 O -0.587 6.587 10 N -0.620 5.620 11 C 0.104 3.896 12 C -0.160 4.160 13 C 0.083 3.917 14 H 0.103 0.897 15 N -0.676 5.676 16 C 0.070 3.930 17 C 0.436 3.564 18 O -0.626 6.626 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.117 3.883 29 C 0.053 3.947 30 H 0.022 0.978 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.349 0.651 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.065 0.935 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.937 21.025 -22.415 31.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.274 5.274 3 C -0.092 4.092 4 C -0.152 4.152 5 C -0.112 4.112 6 H 0.083 0.917 7 C -0.153 4.153 8 C 0.309 3.691 9 O -0.467 6.467 10 N -0.354 5.354 11 C -0.018 4.018 12 C -0.200 4.200 13 C -0.028 4.028 14 H 0.121 0.879 15 N -0.307 5.307 16 C -0.062 4.062 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.007 4.007 29 C -0.074 4.074 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.169 0.831 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.083 0.917 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.309 20.259 -22.426 30.873 hybrid contribution 0.449 -0.540 1.259 1.441 sum -5.860 19.719 -21.167 29.516 Atomic orbital electron populations 1.22543 0.87459 1.02023 1.00853 1.63620 1.08474 1.15470 1.39860 1.23172 0.96083 0.88577 1.01385 1.22783 0.97618 0.99304 0.95538 1.22101 0.95278 0.96157 0.97629 0.91674 1.21688 0.99318 0.97440 0.96872 1.21132 0.84263 0.81043 0.82634 1.90701 1.19791 1.69563 1.66647 1.48612 1.08909 1.39403 1.38457 1.22211 0.77973 1.01181 1.00446 1.23415 0.99703 1.00567 0.96304 1.22706 0.93659 0.91604 0.94802 0.87928 1.59843 1.50155 1.05597 1.15151 1.21519 0.95643 0.93901 0.95157 1.20940 0.82425 0.91362 0.82924 1.90506 1.47172 1.46565 1.66989 1.41918 1.35954 1.12487 1.30575 1.19696 1.21678 0.90111 1.14932 0.90460 1.25995 0.95209 1.02743 0.97123 1.69666 1.24368 1.33176 1.28741 0.84897 0.78278 0.77381 0.77936 1.19962 1.19480 1.19721 1.21952 0.97764 0.91804 0.89214 1.22769 0.97949 0.97133 0.89598 0.95937 0.90061 0.91941 0.89058 0.93571 0.88791 0.89030 0.85776 0.86534 0.88457 0.89203 0.87788 0.90411 0.83127 0.90491 0.87817 0.76856 0.91294 0.92343 0.92248 0.91670 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.12 127.69 1.16 1.47 16 2 N -0.55 -9.42 5.44 -911.68 -4.96 -14.38 16 3 C 0.04 0.42 6.73 86.77 0.58 1.01 16 4 C -0.11 -1.04 6.52 31.98 0.21 -0.83 16 5 C -0.09 -1.34 2.55 -9.61 -0.02 -1.36 16 6 H 0.06 1.20 8.04 -2.39 -0.02 1.18 16 7 C -0.11 -1.32 4.28 29.85 0.13 -1.19 16 8 C 0.52 10.91 7.64 87.66 0.67 11.58 16 9 O -0.59 -17.94 15.11 -3.05 -0.05 -17.99 16 10 N -0.62 -11.67 3.33 -811.74 -2.70 -14.37 16 11 C 0.10 1.12 6.49 86.73 0.56 1.69 16 12 C -0.16 -2.22 6.53 31.78 0.21 -2.01 16 13 C 0.08 1.74 3.32 46.32 0.15 1.89 16 14 H 0.10 2.00 7.92 -2.39 -0.02 1.98 16 15 N -0.68 -19.86 6.00 -488.35 -2.93 -22.79 16 16 C 0.07 2.20 6.04 85.56 0.52 2.72 16 17 C 0.44 20.16 7.82 87.66 0.69 20.85 16 18 O -0.63 -34.39 15.78 -3.08 -0.05 -34.44 16 19 N -0.57 -28.69 5.29 -306.98 -1.62 -30.31 16 20 C -0.33 -18.85 9.68 84.04 0.81 -18.03 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 23 N -0.92 -48.73 13.05 21.66 0.28 -48.44 16 24 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 C 0.12 2.80 6.60 86.86 0.57 3.37 16 29 C 0.05 1.03 5.49 86.65 0.48 1.51 16 30 H 0.02 0.36 8.10 -2.39 -0.02 0.34 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.55 7.78 -2.39 -0.02 0.53 16 35 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.09 0.63 8.05 -2.39 -0.02 0.61 16 37 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.12 0.93 8.06 -2.39 -0.02 0.91 16 39 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.17 7.80 -2.39 -0.02 1.15 16 43 H 0.35 10.75 8.01 -89.69 -0.72 10.03 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.10 2.97 8.09 -2.38 -0.02 2.95 16 46 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 47 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 48 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.06 1.69 8.04 -2.39 -0.02 1.67 16 50 H 0.06 1.32 7.77 -2.39 -0.02 1.31 16 51 H 0.04 0.91 7.11 -2.39 -0.02 0.89 16 Total: -1.00 -75.24 408.73 -3.34 -78.57 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.52 Total: 36.95 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 7.19 Total: 22.55 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -11.93 Total: -130.30 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -0.09 Total: -52.42 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -75.24 -3.34 -78.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265454051.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.363 kcal (2) G-P(sol) polarization free energy of solvation -75.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds