Wall clock time and date at job start Tue Mar 31 2020 22:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46008 * 118.53516 * 2 1 4 4 C 1.52994 * 110.03957 * 161.82030 * 3 2 1 5 5 N 1.47186 * 108.71798 * 50.30180 * 4 3 2 6 6 C 1.46906 * 110.99676 * 167.62129 * 5 4 3 7 7 C 1.50706 * 109.46929 * 188.93881 * 6 5 4 8 8 O 1.21273 * 119.99806 * 0.02562 * 7 6 5 9 9 N 1.34768 * 119.99753 * 179.97438 * 7 6 5 10 10 C 1.46932 * 120.63160 * 359.72467 * 9 7 6 11 11 C 1.53626 * 108.54332 * 126.36707 * 10 9 7 12 12 C 1.53038 * 109.24574 * 54.85275 * 11 10 9 13 13 C 1.53048 * 109.53842 * 298.51473 * 12 11 10 14 14 H 1.08999 * 109.49307 * 301.40737 * 13 12 11 15 15 C 1.52997 * 109.52118 * 181.33161 * 13 12 11 16 16 N 1.46501 * 109.46732 * 175.14541 * 15 13 12 17 17 C 1.36939 * 119.99863 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00123 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99956 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00086 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00054 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46910 * 60.00318 * 21 19 17 23 23 H 1.48503 * 109.46913 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47371 * 300.00084 * 21 19 17 25 25 C 1.46922 * 120.63113 * 179.97438 * 9 7 6 26 26 C 1.46898 * 110.17728 * 290.98626 * 5 4 3 27 27 C 1.33710 * 118.53558 * 179.97438 * 2 1 3 28 28 O 1.21286 * 118.63146 * 1.71193 * 27 2 1 29 29 H 1.09006 * 109.46775 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47504 * 300.02104 * 1 2 3 31 31 H 1.09003 * 109.47241 * 60.02553 * 1 2 3 32 32 H 1.09004 * 109.37564 * 281.99152 * 3 2 1 33 33 H 1.08999 * 109.37691 * 41.75414 * 3 2 1 34 34 H 1.09001 * 109.60776 * 290.52588 * 4 3 2 35 35 H 1.08998 * 109.58472 * 170.06751 * 4 3 2 36 36 H 1.08998 * 109.47121 * 308.93547 * 6 5 4 37 37 H 1.09000 * 109.47141 * 68.93746 * 6 5 4 38 38 H 1.08998 * 109.58540 * 246.19808 * 10 9 7 39 39 H 1.08997 * 109.58771 * 6.62383 * 10 9 7 40 40 H 1.09007 * 109.63448 * 294.86402 * 11 10 9 41 41 H 1.08999 * 109.46222 * 174.74255 * 11 10 9 42 42 H 1.09001 * 109.46450 * 178.49151 * 12 11 10 43 43 H 1.09002 * 109.44577 * 58.52434 * 12 11 10 44 44 H 1.08994 * 109.47361 * 295.13894 * 15 13 12 45 45 H 1.08996 * 109.47558 * 55.14823 * 15 13 12 46 46 H 0.96998 * 120.00234 * 359.97438 * 16 15 13 47 47 H 0.97002 * 119.99618 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.58602 * 353.37335 * 25 9 7 49 49 H 1.09004 * 109.58996 * 113.80066 * 25 9 7 50 50 H 1.08997 * 109.38759 * 170.45480 * 26 5 4 51 51 H 1.08999 * 109.38547 * 290.25185 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6126 1.0910 0.4484 5 7 4.2094 -0.0015 -0.3370 6 6 5.6677 -0.0386 -0.1637 7 6 6.2650 -1.0170 -1.1420 8 8 5.5467 -1.6232 -1.9084 9 7 7.5975 -1.2175 -1.1659 10 6 8.4813 -0.4853 -0.2485 11 6 9.3453 -1.5020 0.5130 12 6 10.0810 -2.3916 -0.4917 13 6 9.0623 -3.1618 -1.3352 14 1 8.4300 -3.7633 -0.6823 15 6 9.7983 -4.0758 -2.3170 16 7 8.8257 -4.8966 -3.0427 17 6 9.2546 -5.7972 -3.9809 18 1 10.3097 -5.9020 -4.1862 19 6 8.3331 -6.5753 -4.6681 20 7 7.0472 -6.4473 -4.4183 21 14 8.9181 -7.8033 -5.9486 22 1 9.8184 -8.7953 -5.3080 23 1 7.7467 -8.5032 -6.5346 24 1 9.6539 -7.0873 -7.0214 25 6 8.1946 -2.1684 -2.1135 26 6 3.6018 -1.2854 0.0377 27 6 2.1037 -1.1747 0.0005 28 8 1.4466 -2.1936 -0.0308 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5141 0.8897 31 1 -0.3634 0.5134 -0.8902 32 1 2.1475 1.7025 -1.0059 33 1 1.6613 1.9669 0.6847 34 1 3.6371 0.8353 1.5078 35 1 4.1721 2.0109 0.2791 36 1 6.0805 0.9538 -0.3445 37 1 5.9049 -0.3510 0.8533 38 1 9.1215 0.1886 -0.8178 39 1 7.8808 0.0877 0.4580 40 1 8.7102 -2.1192 1.1486 41 1 10.0714 -0.9719 1.1295 42 1 10.7159 -3.0969 0.0445 43 1 10.6967 -1.7712 -1.1429 44 1 10.3620 -3.4690 -3.0255 45 1 10.4822 -4.7230 -1.7681 46 1 7.8781 -4.8028 -2.8580 47 1 6.4033 -6.9908 -4.8988 48 1 7.4048 -2.7063 -2.6379 49 1 8.8118 -1.6293 -2.8322 50 1 3.9252 -2.0564 -0.6616 51 1 3.9182 -1.5550 1.0453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265615418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:54 Heat of formation + Delta-G solvation = -35.149673 kcal Electronic energy + Delta-G solvation = -30459.657355 eV Core-core repulsion = 26394.775121 eV Total energy + Delta-G solvation = -4064.882233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83949 -39.99243 -37.96969 -36.98477 -35.37240 -34.91007 -32.92485 -31.68273 -30.62504 -29.93377 -29.40272 -27.07614 -25.50761 -25.30438 -24.46775 -23.15553 -22.77530 -21.40089 -20.12232 -18.99374 -18.85442 -17.68005 -17.01722 -16.94906 -16.67347 -16.33400 -15.74683 -15.52727 -15.00221 -14.70887 -14.66161 -14.51795 -14.31620 -14.06101 -13.57222 -13.48259 -13.27849 -13.20214 -12.92178 -12.82751 -12.70762 -12.50599 -12.40270 -12.30505 -12.17202 -11.82897 -11.59232 -11.50181 -11.12010 -10.98383 -10.79049 -10.61765 -10.38859 -10.28058 -10.01311 -9.95279 -9.62992 -9.54530 -8.96528 -8.80591 -8.76998 -8.47250 -6.84286 -5.66104 -2.96405 2.48432 2.70420 2.72943 2.88390 3.49164 3.50200 3.53894 3.56169 4.25243 4.32889 4.37823 4.61430 4.68829 4.72249 4.72876 4.84001 4.92426 4.96581 5.00975 5.09165 5.11283 5.13408 5.21201 5.23881 5.30674 5.37698 5.46914 5.60367 5.64407 5.66179 5.70285 5.78837 5.82473 5.95653 6.09025 6.11464 6.13870 6.22811 6.32720 6.40345 6.49319 6.57711 6.68395 6.79704 6.90281 7.18370 7.50473 7.76805 8.00080 8.31811 8.51273 9.62091 10.19918 10.53988 11.55898 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010931 B = 0.002896 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.806419 B = 9666.711593 C =11805.703612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.611 5.611 3 C 0.122 3.878 4 C 0.034 3.966 5 N -0.515 5.515 6 C 0.037 3.963 7 C 0.508 3.492 8 O -0.509 6.509 9 N -0.613 5.613 10 C 0.107 3.893 11 C -0.134 4.134 12 C -0.113 4.113 13 C -0.107 4.107 14 H 0.073 0.927 15 C 0.161 3.839 16 N -0.733 5.733 17 C -0.244 4.244 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.928 5.928 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.122 3.878 26 C 0.034 3.966 27 C 0.526 3.474 28 O -0.544 6.544 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.019 0.981 45 H 0.021 0.979 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.104 0.896 49 H 0.065 0.935 50 H 0.139 0.861 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 23.716 16.607 29.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.346 5.346 3 C -0.001 4.001 4 C -0.094 4.094 5 N -0.241 5.241 6 C -0.093 4.093 7 C 0.294 3.706 8 O -0.384 6.384 9 N -0.348 5.348 10 C -0.016 4.016 11 C -0.172 4.172 12 C -0.151 4.151 13 C -0.127 4.127 14 H 0.091 0.909 15 C 0.033 3.967 16 N -0.378 5.378 17 C -0.376 4.376 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.576 5.576 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.000 4.000 26 C -0.096 4.096 27 C 0.315 3.685 28 O -0.421 6.421 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.037 0.963 45 H 0.038 0.962 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.122 0.878 49 H 0.083 0.917 50 H 0.156 0.844 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.262 22.825 15.546 27.943 hybrid contribution 0.347 -0.630 0.234 0.756 sum -3.915 22.195 15.780 27.513 Atomic orbital electron populations 1.21730 0.79466 1.04681 1.01092 1.47300 1.07329 1.06173 1.73774 1.21470 0.91290 0.84925 1.02459 1.22558 0.95077 0.95998 0.95774 1.62161 1.03025 1.03545 1.55322 1.22092 0.88412 1.00792 0.98043 1.20345 0.81999 0.83378 0.84843 1.90769 1.59089 1.48035 1.40459 1.48189 1.05732 1.42965 1.37872 1.21821 0.93271 0.94226 0.92319 1.21987 0.99025 0.98015 0.98155 1.21522 0.97728 0.98393 0.97421 1.21680 0.96944 0.96357 0.97675 0.90857 1.20623 0.92337 0.91631 0.92148 1.42404 1.05110 1.44764 1.45487 1.19141 0.92316 1.13068 1.13032 0.91326 1.24765 0.95305 1.00361 1.00415 1.69665 0.99874 1.43282 1.44778 0.86289 0.77175 0.81233 0.81576 1.21352 1.21689 1.21318 1.21709 0.98043 0.89864 0.90370 1.22560 0.90167 0.94157 1.02701 1.20118 0.90279 0.82952 0.75179 1.90734 1.66671 1.34573 1.50126 0.89111 0.92363 0.92158 0.90638 0.90191 0.93479 0.88320 0.87401 0.91539 0.91203 0.90423 0.91554 0.90955 0.91536 0.91742 0.96311 0.96152 0.78064 0.93386 0.87779 0.91670 0.84388 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.55 59.85 0.63 1.27 16 2 N -0.61 -6.50 3.23 -182.46 -0.59 -7.09 16 3 C 0.12 0.83 6.64 -4.31 -0.03 0.80 16 4 C 0.03 0.22 5.60 -3.67 -0.02 0.20 16 5 N -0.51 -5.43 4.47 -237.54 -1.06 -6.49 16 6 C 0.04 0.34 3.78 -4.97 -0.02 0.32 16 7 C 0.51 7.17 7.46 -10.99 -0.08 7.09 16 8 O -0.51 -9.92 13.72 5.56 0.08 -9.84 16 9 N -0.61 -7.92 2.97 -172.53 -0.51 -8.43 16 10 C 0.11 0.90 6.37 -3.48 -0.02 0.88 16 11 C -0.13 -1.17 6.10 -26.39 -0.16 -1.33 16 12 C -0.11 -1.30 5.17 -26.69 -0.14 -1.44 16 13 C -0.11 -1.71 2.37 -90.52 -0.21 -1.92 16 14 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 15 C 0.16 3.23 5.66 -4.04 -0.02 3.21 16 16 N -0.73 -19.14 5.38 -59.91 -0.32 -19.46 16 17 C -0.24 -7.06 9.99 -15.06 -0.15 -7.21 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -29.46 13.06 55.49 0.72 -28.73 16 21 Si 0.91 23.18 29.55 -169.99 -5.02 18.15 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 C 0.12 2.00 5.51 -3.73 -0.02 1.98 16 26 C 0.03 0.45 5.14 -5.19 -0.03 0.42 16 27 C 0.53 7.54 7.57 -11.67 -0.09 7.45 16 28 O -0.54 -9.95 16.07 5.55 0.09 -9.86 16 29 H 0.09 1.01 6.67 -51.93 -0.35 0.66 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.32 8.13 -51.93 -0.42 -0.10 16 34 H 0.05 0.27 8.08 -51.93 -0.42 -0.15 16 35 H 0.10 0.38 7.91 -51.93 -0.41 -0.03 16 36 H 0.11 0.67 7.72 -51.93 -0.40 0.27 16 37 H 0.07 0.47 7.62 -51.93 -0.40 0.08 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.43 5.93 -51.93 -0.31 0.13 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.39 10.79 6.89 -40.82 -0.28 10.51 16 47 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 48 H 0.10 2.19 6.20 -51.93 -0.32 1.87 16 49 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.14 2.36 6.01 -51.93 -0.31 2.04 16 51 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 LS Contribution 396.22 15.07 5.97 5.97 Total: -1.00 -38.22 396.22 -9.76 -47.98 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.66 Total: 6.52 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -0.46 Total: 11.28 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -1.76 Total: -70.20 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.17 Total: -19.71 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.22 -9.76 -47.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265615418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.827 kcal (2) G-P(sol) polarization free energy of solvation -38.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds