Wall clock time and date at job start Tue Mar 31 2020 22:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46008 * 118.53516 * 2 1 4 4 C 1.52994 * 110.03957 * 161.82030 * 3 2 1 5 5 N 1.47186 * 108.71798 * 50.30180 * 4 3 2 6 6 C 1.46906 * 110.99676 * 167.62129 * 5 4 3 7 7 C 1.50706 * 109.46929 * 188.93881 * 6 5 4 8 8 O 1.21273 * 119.99806 * 0.02562 * 7 6 5 9 9 N 1.34768 * 119.99753 * 179.97438 * 7 6 5 10 10 C 1.46932 * 120.63160 * 359.72467 * 9 7 6 11 11 C 1.53626 * 108.54332 * 126.36707 * 10 9 7 12 12 C 1.53038 * 109.24574 * 54.85275 * 11 10 9 13 13 C 1.53048 * 109.53842 * 298.51473 * 12 11 10 14 14 H 1.08999 * 109.49307 * 301.40737 * 13 12 11 15 15 C 1.52997 * 109.52118 * 181.33161 * 13 12 11 16 16 N 1.46501 * 109.46732 * 175.14541 * 15 13 12 17 17 C 1.36939 * 119.99863 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00123 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99956 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00086 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00054 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46910 * 60.00318 * 21 19 17 23 23 H 1.48503 * 109.46913 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47371 * 300.00084 * 21 19 17 25 25 C 1.46922 * 120.63113 * 179.97438 * 9 7 6 26 26 C 1.46898 * 110.17728 * 290.98626 * 5 4 3 27 27 C 1.33710 * 118.53558 * 179.97438 * 2 1 3 28 28 O 1.21286 * 118.63146 * 1.71193 * 27 2 1 29 29 H 1.09006 * 109.46775 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47504 * 300.02104 * 1 2 3 31 31 H 1.09003 * 109.47241 * 60.02553 * 1 2 3 32 32 H 1.09004 * 109.37564 * 281.99152 * 3 2 1 33 33 H 1.08999 * 109.37691 * 41.75414 * 3 2 1 34 34 H 1.09001 * 109.60776 * 290.52588 * 4 3 2 35 35 H 1.08998 * 109.58472 * 170.06751 * 4 3 2 36 36 H 1.08998 * 109.47121 * 308.93547 * 6 5 4 37 37 H 1.09000 * 109.47141 * 68.93746 * 6 5 4 38 38 H 1.08998 * 109.58540 * 246.19808 * 10 9 7 39 39 H 1.08997 * 109.58771 * 6.62383 * 10 9 7 40 40 H 1.09007 * 109.63448 * 294.86402 * 11 10 9 41 41 H 1.08999 * 109.46222 * 174.74255 * 11 10 9 42 42 H 1.09001 * 109.46450 * 178.49151 * 12 11 10 43 43 H 1.09002 * 109.44577 * 58.52434 * 12 11 10 44 44 H 1.08994 * 109.47361 * 295.13894 * 15 13 12 45 45 H 1.08996 * 109.47558 * 55.14823 * 15 13 12 46 46 H 0.96998 * 120.00234 * 359.97438 * 16 15 13 47 47 H 0.97002 * 119.99618 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.58602 * 353.37335 * 25 9 7 49 49 H 1.09004 * 109.58996 * 113.80066 * 25 9 7 50 50 H 1.08997 * 109.38759 * 170.45480 * 26 5 4 51 51 H 1.08999 * 109.38547 * 290.25185 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6126 1.0910 0.4484 5 7 4.2094 -0.0015 -0.3370 6 6 5.6677 -0.0386 -0.1637 7 6 6.2650 -1.0170 -1.1420 8 8 5.5467 -1.6232 -1.9084 9 7 7.5975 -1.2175 -1.1659 10 6 8.4813 -0.4853 -0.2485 11 6 9.3453 -1.5020 0.5130 12 6 10.0810 -2.3916 -0.4917 13 6 9.0623 -3.1618 -1.3352 14 1 8.4300 -3.7633 -0.6823 15 6 9.7983 -4.0758 -2.3170 16 7 8.8257 -4.8966 -3.0427 17 6 9.2546 -5.7972 -3.9809 18 1 10.3097 -5.9020 -4.1862 19 6 8.3331 -6.5753 -4.6681 20 7 7.0472 -6.4473 -4.4183 21 14 8.9181 -7.8033 -5.9486 22 1 9.8184 -8.7953 -5.3080 23 1 7.7467 -8.5032 -6.5346 24 1 9.6539 -7.0873 -7.0214 25 6 8.1946 -2.1684 -2.1135 26 6 3.6018 -1.2854 0.0377 27 6 2.1037 -1.1747 0.0005 28 8 1.4466 -2.1936 -0.0308 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5141 0.8897 31 1 -0.3634 0.5134 -0.8902 32 1 2.1475 1.7025 -1.0059 33 1 1.6613 1.9669 0.6847 34 1 3.6371 0.8353 1.5078 35 1 4.1721 2.0109 0.2791 36 1 6.0805 0.9538 -0.3445 37 1 5.9049 -0.3510 0.8533 38 1 9.1215 0.1886 -0.8178 39 1 7.8808 0.0877 0.4580 40 1 8.7102 -2.1192 1.1486 41 1 10.0714 -0.9719 1.1295 42 1 10.7159 -3.0969 0.0445 43 1 10.6967 -1.7712 -1.1429 44 1 10.3620 -3.4690 -3.0255 45 1 10.4822 -4.7230 -1.7681 46 1 7.8781 -4.8028 -2.8580 47 1 6.4033 -6.9908 -4.8988 48 1 7.4048 -2.7063 -2.6379 49 1 8.8118 -1.6293 -2.8322 50 1 3.9252 -2.0564 -0.6616 51 1 3.9182 -1.5550 1.0453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265615418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:53 Heat of formation + Delta-G solvation = -66.099366 kcal Electronic energy + Delta-G solvation = -30460.999434 eV Core-core repulsion = 26394.775121 eV Total energy + Delta-G solvation = -4066.224313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.77106 -41.04331 -39.06154 -38.00662 -36.59879 -36.24612 -34.47414 -33.03941 -31.71979 -31.04619 -30.50131 -28.04910 -27.04087 -26.21724 -25.35809 -24.83701 -23.57086 -22.64820 -21.41219 -19.93244 -19.70737 -19.18031 -18.51389 -17.85183 -17.63089 -17.21181 -16.79771 -16.70933 -16.49867 -15.93751 -15.58852 -15.52107 -15.38611 -15.34131 -15.05136 -14.76714 -14.33343 -14.16486 -14.07371 -13.99572 -13.76298 -13.47967 -13.45065 -13.20277 -13.02151 -12.89981 -12.83179 -12.64267 -12.58068 -12.29953 -12.21922 -12.04289 -11.93063 -11.78451 -11.51121 -11.29554 -11.07133 -10.96497 -10.69141 -9.79245 -9.60247 -9.45603 -9.03133 -7.95828 -5.26926 1.41677 1.42818 1.47726 1.54221 1.68122 1.89624 2.00329 2.54022 2.70224 3.36717 3.44111 3.56336 3.75859 3.79330 3.90860 3.94284 3.99278 4.15020 4.20490 4.24188 4.26707 4.32332 4.38832 4.40500 4.49432 4.53625 4.61510 4.63964 4.66119 4.74549 4.78162 4.87352 4.91156 4.93343 4.94535 4.99932 5.03789 5.15897 5.25611 5.33859 5.36886 5.45626 5.52640 5.54478 5.63461 5.87248 6.23869 6.29852 6.53120 7.00126 7.29282 7.29726 8.06716 8.28292 9.27236 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010931 B = 0.002896 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.806419 B = 9666.711593 C =11805.703612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.605 5.605 3 C 0.112 3.888 4 C 0.035 3.965 5 N -0.535 5.535 6 C 0.049 3.951 7 C 0.494 3.506 8 O -0.580 6.580 9 N -0.610 5.610 10 C 0.100 3.900 11 C -0.128 4.128 12 C -0.107 4.107 13 C -0.094 4.094 14 H 0.047 0.953 15 C 0.157 3.843 16 N -0.749 5.749 17 C -0.248 4.248 18 H 0.080 0.920 19 C -0.082 4.082 20 N -0.973 5.973 21 Si 0.979 3.021 22 H -0.274 1.274 23 H -0.298 1.298 24 H -0.274 1.274 25 C 0.130 3.870 26 C 0.043 3.957 27 C 0.515 3.485 28 O -0.604 6.604 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.063 0.937 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.057 0.943 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.026 0.974 45 H 0.025 0.975 46 H 0.369 0.631 47 H 0.249 0.751 48 H 0.043 0.957 49 H 0.068 0.932 50 H 0.086 0.914 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 27.962 19.068 33.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.337 5.337 3 C -0.010 4.010 4 C -0.092 4.092 5 N -0.262 5.262 6 C -0.081 4.081 7 C 0.283 3.717 8 O -0.459 6.459 9 N -0.344 5.344 10 C -0.021 4.021 11 C -0.166 4.166 12 C -0.145 4.145 13 C -0.113 4.113 14 H 0.066 0.934 15 C 0.030 3.970 16 N -0.392 5.392 17 C -0.379 4.379 18 H 0.098 0.902 19 C -0.274 4.274 20 N -0.623 5.623 21 Si 0.807 3.193 22 H -0.199 1.199 23 H -0.225 1.225 24 H -0.200 1.200 25 C 0.007 3.993 26 C -0.087 4.087 27 C 0.303 3.697 28 O -0.485 6.485 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.138 0.862 34 H 0.081 0.919 35 H 0.156 0.844 36 H 0.170 0.830 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.076 0.924 41 H 0.130 0.870 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.201 0.799 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.936 27.182 18.062 32.693 hybrid contribution -0.306 -1.845 -0.519 1.941 sum -2.241 25.337 17.543 30.899 Atomic orbital electron populations 1.21869 0.78606 1.03400 1.03451 1.47495 1.08228 1.06508 1.71496 1.21887 0.92010 0.83322 1.03771 1.22778 0.94682 0.95745 0.95968 1.62057 1.03995 1.03005 1.57153 1.22188 0.87325 1.01098 0.97487 1.21512 0.81864 0.83418 0.84891 1.90761 1.60763 1.50831 1.43531 1.48304 1.06282 1.42150 1.37643 1.22269 0.93394 0.94101 0.92314 1.21995 0.99503 0.97655 0.97438 1.21518 0.96651 0.98701 0.97634 1.21527 0.97427 0.95712 0.96676 0.93449 1.20866 0.91723 0.91733 0.92681 1.42692 1.05413 1.45287 1.45785 1.19650 0.92806 1.12706 1.12762 0.90180 1.25710 0.95375 1.03021 1.03249 1.69882 1.01269 1.44751 1.46446 0.85137 0.76502 0.78756 0.78917 1.19941 1.22450 1.20029 1.21268 0.96215 0.90559 0.91302 1.22208 0.89715 0.94885 1.01931 1.20417 0.90782 0.83441 0.75022 1.90693 1.67814 1.36807 1.53201 0.92260 0.88980 0.90632 0.90615 0.86157 0.91858 0.84401 0.82979 0.88384 0.89196 0.86259 0.92403 0.86979 0.91030 0.90346 0.95574 0.95693 0.79908 0.94201 0.93812 0.91388 0.89548 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 10.55 127.77 1.35 2.52 16 2 N -0.61 -12.38 3.23 -850.18 -2.74 -15.12 16 3 C 0.11 1.14 6.64 86.47 0.57 1.72 16 4 C 0.03 0.30 5.60 86.25 0.48 0.78 16 5 N -0.54 -10.36 4.47 -905.44 -4.05 -14.41 16 6 C 0.05 0.73 3.78 85.56 0.32 1.05 16 7 C 0.49 14.07 7.46 87.66 0.65 14.73 16 8 O -0.58 -24.78 13.72 -3.01 -0.04 -24.82 16 9 N -0.61 -15.34 2.97 -818.15 -2.43 -17.77 16 10 C 0.10 1.24 6.37 86.51 0.55 1.79 16 11 C -0.13 -1.70 6.10 30.82 0.19 -1.52 16 12 C -0.11 -2.21 5.17 30.62 0.16 -2.06 16 13 C -0.09 -3.07 2.37 -10.73 -0.03 -3.09 16 14 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 15 C 0.16 6.47 5.66 86.38 0.49 6.96 16 16 N -0.75 -41.26 5.38 -343.47 -1.85 -43.11 16 17 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 18 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 19 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 20 N -0.97 -65.25 13.06 21.65 0.28 -64.97 16 21 Si 0.98 49.03 29.55 68.60 2.03 51.05 16 22 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 24 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 25 C 0.13 4.50 5.51 86.35 0.48 4.98 16 26 C 0.04 1.19 5.14 85.42 0.44 1.63 16 27 C 0.51 15.56 7.57 87.69 0.66 16.22 16 28 O -0.60 -24.24 16.07 -3.05 -0.05 -24.29 16 29 H 0.06 1.41 6.67 -2.38 -0.02 1.39 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.12 0.34 8.13 -2.39 -0.02 0.32 16 34 H 0.06 0.39 8.08 -2.39 -0.02 0.37 16 35 H 0.14 0.15 7.91 -2.39 -0.02 0.13 16 36 H 0.15 0.95 7.72 -2.39 -0.02 0.94 16 37 H 0.10 0.91 7.62 -2.39 -0.02 0.89 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.12 0.54 5.93 -2.39 -0.01 0.53 16 40 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.37 22.46 6.89 -92.71 -0.64 21.83 16 47 H 0.25 16.29 8.31 -92.71 -0.77 15.52 16 48 H 0.04 2.05 6.20 -2.39 -0.01 2.04 16 49 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 50 H 0.09 3.34 6.01 -2.39 -0.01 3.33 16 51 H 0.08 1.89 8.05 -2.39 -0.02 1.87 16 Total: -1.00 -96.69 396.22 -0.93 -97.62 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.28 Total: 28.56 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 7.63 Total: 27.25 kcal Atomic # 7 Polarization: -144.60 SS G_CDS: -10.78 Total: -155.38 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -0.09 Total: -49.11 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.03 Total: 51.05 kcal Total: -96.69 -0.93 -97.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265615418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.519 kcal (2) G-P(sol) polarization free energy of solvation -96.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds