Wall clock time and date at job start Tue Mar 31 2020 21:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47468 * 2 1 4 4 C 1.53000 * 109.46876 * 120.00322 * 2 1 3 5 5 N 1.46503 * 109.47074 * 175.00188 * 4 2 1 6 6 C 1.34771 * 120.00211 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00070 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00061 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.69009 * 60.32428 * 8 6 5 10 10 C 1.53140 * 109.57828 * 299.99356 * 8 6 5 11 11 N 1.46906 * 109.37379 * 240.20404 * 10 8 6 12 12 C 1.46935 * 111.05679 * 297.99772 * 11 10 8 13 13 C 1.53127 * 109.35237 * 61.95635 * 12 11 10 14 14 C 1.53386 * 109.57888 * 180.65470 * 8 6 5 15 15 C 1.53402 * 108.59572 * 60.83621 * 14 8 6 16 16 C 1.46944 * 111.05402 * 61.99717 * 11 10 8 17 17 N 1.46900 * 109.47001 * 239.99605 * 2 1 3 18 18 C 1.46904 * 110.99423 * 85.00457 * 17 2 1 19 19 C 1.50705 * 109.47055 * 180.02562 * 18 17 2 20 20 O 1.21293 * 119.99898 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00204 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00225 * 179.97438 * 21 19 18 23 23 H 1.08008 * 120.00145 * 359.97438 * 22 21 19 24 24 C 1.38953 * 120.00352 * 179.97438 * 22 21 19 25 25 N 1.31402 * 120.00285 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99717 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47011 * 90.00059 * 26 24 22 28 28 H 1.48501 * 109.46973 * 210.00007 * 26 24 22 29 29 H 1.48500 * 109.47137 * 329.99939 * 26 24 22 30 30 H 1.09002 * 109.47322 * 299.99710 * 1 2 3 31 31 H 1.08999 * 109.47200 * 60.00036 * 1 2 3 32 32 H 1.09006 * 109.47409 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47708 * 54.99803 * 4 2 1 34 34 H 1.09000 * 109.47183 * 294.99398 * 4 2 1 35 35 H 0.97006 * 119.99783 * 359.97438 * 5 4 2 36 36 H 1.09007 * 109.48727 * 120.23536 * 10 8 6 37 37 H 1.09006 * 109.48652 * 0.17825 * 10 8 6 38 38 H 1.09000 * 109.49489 * 181.92041 * 12 11 10 39 39 H 1.09004 * 109.49365 * 301.99103 * 12 11 10 40 40 H 1.09002 * 109.57359 * 240.25492 * 13 12 11 41 41 H 1.09003 * 109.57666 * 119.87345 * 13 12 11 42 42 H 1.09000 * 110.11650 * 300.19731 * 14 8 6 43 43 H 1.08995 * 109.57144 * 299.18776 * 15 14 8 44 44 H 1.09000 * 109.57178 * 178.80322 * 15 14 8 45 45 H 1.09001 * 109.49389 * 58.00338 * 16 11 10 46 46 H 1.09002 * 109.48924 * 178.05515 * 16 11 10 47 47 H 1.00895 * 111.00469 * 321.04874 * 17 2 1 48 48 H 1.09002 * 109.46919 * 299.99044 * 18 17 2 49 49 H 1.08994 * 109.47791 * 59.99705 * 18 17 2 50 50 H 0.97004 * 119.99896 * 359.97438 * 21 19 18 51 51 H 0.97001 * 120.00676 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4293 2.1906 7 8 3.5699 -1.8844 3.1394 8 6 5.6748 -1.5379 2.1300 9 1 6.1138 -0.5410 2.0900 10 6 6.0823 -2.3284 0.8833 11 7 6.8268 -3.5282 1.2888 12 6 8.0637 -3.1682 1.9956 13 6 7.7129 -2.4010 3.2736 14 6 6.1874 -2.2757 3.3733 15 6 5.5809 -3.6846 3.3908 16 6 5.9913 -4.4157 2.1095 17 7 2.0197 -0.6926 -1.1994 18 6 2.0825 0.2226 -2.3468 19 6 2.5873 -0.5218 -3.5560 20 8 2.8677 -1.6988 -3.4703 21 7 2.7283 0.1204 -4.7325 22 6 3.1880 -0.5566 -5.8324 23 1 3.4377 -1.6047 -5.7560 24 6 3.3329 0.1054 -7.0454 25 7 3.7740 -0.5434 -8.0995 26 14 2.9004 1.9179 -7.1777 27 1 4.1007 2.7367 -6.8710 28 1 2.4364 2.2167 -8.5563 29 1 1.8205 2.2409 -6.2110 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -1.7198 1.2952 34 1 1.7517 -0.1584 2.1370 35 1 3.9824 -0.4628 0.4316 36 1 6.7131 -1.7063 0.2483 37 1 5.1894 -2.6234 0.3319 38 1 8.6117 -4.0742 2.2541 39 1 8.6807 -2.5406 1.3524 40 1 8.1594 -1.4073 3.2371 41 1 8.0923 -2.9424 4.1402 42 1 5.9023 -1.7336 4.2750 43 1 4.4943 -3.6137 3.4388 44 1 5.9519 -4.2311 4.2579 45 1 5.0994 -4.6963 1.5492 46 1 6.5562 -5.3117 2.3667 47 1 1.4496 -1.4980 -1.4100 48 1 1.0871 0.6162 -2.5525 49 1 2.7588 1.0462 -2.1182 50 1 2.5044 1.0618 -4.8010 51 1 3.8748 -0.0814 -8.9465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266939582.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:17 Heat of formation + Delta-G solvation = -90.791612 kcal Electronic energy + Delta-G solvation = -30399.405117 eV Core-core repulsion = 26332.110068 eV Total energy + Delta-G solvation = -4067.295049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.22426 -40.37547 -39.82926 -38.09292 -35.98717 -35.08930 -33.72400 -33.20814 -32.64532 -31.84135 -31.55058 -28.06972 -27.36824 -25.48103 -24.59614 -23.98141 -23.81398 -21.98204 -21.27362 -21.23778 -20.27769 -18.65425 -18.19697 -17.79579 -17.44667 -17.38372 -17.00861 -16.68317 -16.51959 -16.32965 -16.04218 -15.60483 -15.27096 -14.87432 -14.52212 -14.43590 -14.10495 -13.95540 -13.91380 -13.76742 -13.50893 -13.46970 -13.17206 -13.12444 -13.11893 -13.01825 -12.90193 -12.75270 -12.49456 -12.45242 -12.38586 -12.00084 -11.96640 -11.87590 -11.48100 -11.35955 -11.10665 -10.53686 -10.39748 -10.21655 -9.93896 -9.33492 -9.17873 -8.38653 -5.99392 1.31636 1.37764 1.46305 1.67285 2.00649 2.25190 2.29526 2.73882 3.02616 3.18142 3.40957 3.50840 3.67034 3.84463 3.87075 4.04959 4.07066 4.11720 4.22391 4.23002 4.28340 4.34057 4.34640 4.39437 4.47834 4.49059 4.59476 4.63743 4.66967 4.78422 4.83252 4.89320 4.97369 4.99821 5.01942 5.08317 5.13597 5.20628 5.21871 5.26708 5.38348 5.55285 5.59799 5.93309 6.06418 6.07940 6.16478 6.34598 6.62564 6.65491 6.91998 7.32231 7.43804 8.01274 8.79183 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.002723 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.366064 B =10279.901808 C =11795.469723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 H 0.105 0.895 4 C 0.135 3.865 5 N -0.706 5.706 6 C 0.515 3.485 7 O -0.579 6.579 8 C -0.133 4.133 9 H 0.119 0.881 10 C 0.064 3.936 11 N -0.542 5.542 12 C 0.049 3.951 13 C -0.141 4.141 14 C -0.065 4.065 15 C -0.155 4.155 16 C 0.053 3.947 17 N -0.676 5.676 18 C 0.063 3.937 19 C 0.449 3.551 20 O -0.613 6.613 21 N -0.592 5.592 22 C -0.326 4.326 23 H 0.054 0.946 24 C -0.017 4.017 25 N -0.937 5.937 26 Si 0.965 3.035 27 H -0.256 1.256 28 H -0.279 1.279 29 H -0.229 1.229 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.412 0.588 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.344 0.656 48 H 0.076 0.924 49 H 0.120 0.880 50 H 0.390 0.610 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 6.853 24.116 25.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.031 4.031 3 H 0.123 0.877 4 C 0.011 3.989 5 N -0.357 5.357 6 C 0.302 3.698 7 O -0.460 6.460 8 C -0.156 4.156 9 H 0.137 0.863 10 C -0.065 4.065 11 N -0.262 5.262 12 C -0.079 4.079 13 C -0.180 4.180 14 C -0.084 4.084 15 C -0.194 4.194 16 C -0.075 4.075 17 N -0.309 5.309 18 C -0.069 4.069 19 C 0.237 3.763 20 O -0.497 6.497 21 N -0.234 5.234 22 C -0.456 4.456 23 H 0.072 0.928 24 C -0.215 4.215 25 N -0.578 5.578 26 Si 0.786 3.214 27 H -0.181 1.181 28 H -0.204 1.204 29 H -0.153 1.153 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.249 0.751 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.163 0.837 48 H 0.094 0.906 49 H 0.138 0.862 50 H 0.225 0.775 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.270 5.538 24.315 25.041 hybrid contribution -1.277 0.976 -0.691 1.749 sum 0.993 6.514 23.624 24.526 Atomic orbital electron populations 1.22394 0.94997 1.02649 1.03605 1.21856 0.94252 0.98572 0.88449 0.87651 1.21329 0.80017 1.00120 0.97444 1.45852 1.07943 1.58639 1.23245 1.20870 0.90486 0.76703 0.81760 1.90598 1.71201 1.49098 1.35095 1.22102 0.91472 1.03059 0.98920 0.86276 1.22190 0.98742 0.91023 0.94525 1.62460 1.06527 1.15798 1.41398 1.22327 0.91294 1.00522 0.93736 1.22246 0.93953 1.02215 0.99596 1.20890 0.95631 0.95643 0.96265 1.22382 1.02138 0.96082 0.98768 1.22174 0.96814 0.96099 0.92404 1.60143 1.58595 1.09112 1.03013 1.21683 1.01960 0.95374 0.87931 1.21044 0.82381 0.87949 0.84952 1.90571 1.55161 1.18728 1.85249 1.42029 1.60688 1.11841 1.08820 1.18989 1.42138 0.96030 0.88411 0.92825 1.26125 0.96503 1.04991 0.93893 1.69808 1.46520 1.39611 1.01840 0.85358 0.80239 0.76557 0.79295 1.18087 1.20424 1.15251 0.90107 0.91569 0.92765 0.93552 0.90559 0.75112 0.88642 0.92014 0.89866 0.89692 0.90121 0.90388 0.90608 0.91548 0.91147 0.92856 0.89648 0.83691 0.90575 0.86192 0.77492 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 9.16 71.98 0.66 -1.89 16 2 C 0.08 1.32 2.75 44.92 0.12 1.45 16 3 H 0.11 1.39 7.80 -2.39 -0.02 1.37 16 4 C 0.14 2.70 5.37 86.38 0.46 3.16 16 5 N -0.71 -15.11 5.13 -463.07 -2.38 -17.49 16 6 C 0.51 12.51 6.59 87.66 0.58 13.09 16 7 O -0.58 -17.71 13.74 -3.03 -0.04 -17.75 16 8 C -0.13 -2.60 2.60 -11.36 -0.03 -2.63 16 9 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 10 C 0.06 1.43 5.60 86.35 0.48 1.92 16 11 N -0.54 -12.07 5.22 -895.17 -4.67 -16.74 16 12 C 0.05 0.81 6.09 86.34 0.53 1.33 16 13 C -0.14 -2.03 5.75 30.77 0.18 -1.85 16 14 C -0.06 -1.24 2.60 -10.40 -0.03 -1.27 16 15 C -0.15 -3.41 5.43 30.77 0.17 -3.24 16 16 C 0.05 1.21 6.09 86.34 0.53 1.73 16 17 N -0.68 -16.64 5.31 -495.57 -2.63 -19.27 16 18 C 0.06 1.62 5.97 85.56 0.51 2.13 16 19 C 0.45 18.81 7.82 87.66 0.69 19.50 16 20 O -0.61 -32.43 15.78 -3.07 -0.05 -32.48 16 21 N -0.59 -26.47 5.09 -306.98 -1.56 -28.04 16 22 C -0.33 -18.67 10.16 84.04 0.85 -17.82 16 23 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 24 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 25 N -0.94 -56.02 13.96 21.66 0.30 -55.72 16 26 Si 0.97 37.61 27.74 68.60 1.90 39.52 16 27 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 28 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 29 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.93 7.45 -2.39 -0.02 0.91 16 32 H 0.05 0.88 8.13 -2.38 -0.02 0.86 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.41 8.33 8.04 -92.70 -0.75 7.59 16 36 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.06 1.70 7.45 -2.38 -0.02 1.68 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.55 8.11 -2.39 -0.02 1.53 16 43 H 0.07 1.85 5.59 -2.39 -0.01 1.84 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.34 9.88 8.17 -89.70 -0.73 9.14 16 48 H 0.08 1.59 7.44 -2.39 -0.02 1.57 16 49 H 0.12 2.41 8.05 -2.39 -0.02 2.39 16 50 H 0.39 14.20 5.76 -92.71 -0.53 13.67 16 51 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -77.93 395.59 -4.08 -82.01 By element: Atomic # 1 Polarization: 51.93 SS G_CDS: -1.12 Total: 50.81 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 6.17 Total: 15.15 kcal Atomic # 7 Polarization: -126.31 SS G_CDS: -10.94 Total: -137.25 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.09 Total: -50.24 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 1.90 Total: 39.52 kcal Total: -77.93 -4.08 -82.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266939582.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.781 kcal (2) G-P(sol) polarization free energy of solvation -77.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds