Wall clock time and date at job start Tue Mar 31 2020 21:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47422 * 2 1 4 4 C 1.53001 * 109.47386 * 240.00316 * 2 1 3 5 5 N 1.46500 * 109.47359 * 184.99796 * 4 2 1 6 6 C 1.34779 * 120.00211 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99663 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99984 * 180.02562 * 6 5 4 9 9 H 1.08997 * 109.57925 * 299.73866 * 8 6 5 10 10 C 1.53140 * 109.57845 * 60.00370 * 8 6 5 11 11 N 1.46910 * 109.38794 * 119.91956 * 10 8 6 12 12 C 1.46939 * 111.05790 * 298.03805 * 11 10 8 13 13 C 1.53123 * 109.37476 * 61.92318 * 12 11 10 14 14 C 1.53385 * 109.68503 * 179.40780 * 8 6 5 15 15 C 1.53392 * 108.60023 * 181.17081 * 14 8 6 16 16 C 1.46947 * 111.05441 * 62.00824 * 11 10 8 17 17 N 1.46897 * 109.47410 * 120.00211 * 2 1 3 18 18 C 1.46907 * 110.99945 * 275.00156 * 17 2 1 19 19 C 1.50703 * 109.46922 * 179.97438 * 18 17 2 20 20 O 1.21289 * 120.00451 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99456 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99655 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00227 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99906 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00060 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99898 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47192 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47079 * 120.00114 * 26 24 22 29 29 H 1.48501 * 109.47392 * 240.00335 * 26 24 22 30 30 H 1.09003 * 109.47090 * 59.99862 * 1 2 3 31 31 H 1.09004 * 109.46734 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47064 * 299.99708 * 1 2 3 33 33 H 1.08999 * 109.46999 * 64.99553 * 4 2 1 34 34 H 1.09001 * 109.47009 * 304.99826 * 4 2 1 35 35 H 0.97003 * 120.00027 * 0.02562 * 5 4 2 36 36 H 1.09002 * 109.48795 * 239.90136 * 10 8 6 37 37 H 1.09002 * 109.48975 * 359.94301 * 10 8 6 38 38 H 1.09000 * 109.47100 * 301.95637 * 12 11 10 39 39 H 1.09000 * 109.51117 * 181.90964 * 12 11 10 40 40 H 1.08999 * 109.57876 * 240.26440 * 13 12 11 41 41 H 1.09000 * 109.68083 * 119.94050 * 13 12 11 42 42 H 1.09005 * 110.11366 * 59.73608 * 14 8 6 43 43 H 1.08994 * 109.57888 * 178.81603 * 15 14 8 44 44 H 1.09003 * 109.57606 * 299.19860 * 15 14 8 45 45 H 1.09000 * 109.49004 * 58.00654 * 16 11 10 46 46 H 1.09000 * 109.48720 * 178.07606 * 16 11 10 47 47 H 1.00903 * 110.99849 * 38.94941 * 17 2 1 48 48 H 1.08996 * 109.47090 * 300.00084 * 18 17 2 49 49 H 1.08997 * 109.46943 * 59.99542 * 18 17 2 50 50 H 0.96999 * 120.00156 * 0.02562 * 21 19 18 51 51 H 0.97004 * 119.99797 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.1731 -1.4290 -2.1908 7 8 3.5700 -1.8840 -3.1396 8 6 5.6749 -1.5376 -2.1301 9 1 6.1119 -0.5399 -2.0889 10 6 6.0823 -2.3281 -0.8834 11 7 6.8295 -3.5265 -1.2884 12 6 5.9970 -4.4147 -2.1113 13 6 5.5866 -3.6835 -3.3925 14 6 6.1904 -2.2736 -3.3732 15 6 7.7160 -2.3959 -3.2719 16 6 8.0668 -3.1639 -1.9934 17 7 2.0197 -0.6925 1.1994 18 6 2.0825 0.2226 2.3469 19 6 2.5874 -0.5219 3.5560 20 8 2.8679 -1.6988 3.4702 21 7 2.7283 0.1204 4.7325 22 6 3.1881 -0.5567 5.8323 23 1 3.4379 -1.6046 5.7559 24 6 3.3329 0.1054 7.0454 25 7 3.0286 1.3803 7.1385 26 14 3.9588 -0.8174 8.5441 27 1 4.2276 -2.2313 8.1783 28 1 5.2124 -0.1846 9.0271 29 1 2.9345 -0.7698 9.6182 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7516 -0.1582 -2.1370 34 1 1.6054 -1.7197 -1.2952 35 1 3.9824 -0.4627 -0.4316 36 1 6.7111 -1.7052 -0.2472 37 1 5.1894 -2.6251 -0.3332 38 1 5.1050 -4.6976 -1.5523 39 1 6.5637 -5.3095 -2.3688 40 1 4.4999 -3.6148 -3.4417 41 1 5.9578 -4.2279 -4.2608 42 1 5.9053 -1.7314 -4.2749 43 1 8.0975 -2.9358 -4.1384 44 1 8.1605 -1.4014 -3.2342 45 1 8.6817 -2.5355 -1.3491 46 1 8.6168 -4.0689 -2.2516 47 1 1.4495 -1.4979 1.4100 48 1 2.7588 1.0462 2.1182 49 1 1.0871 0.6163 2.5525 50 1 2.5043 1.0617 4.8010 51 1 3.1293 1.8423 7.9855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266939583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:23 Heat of formation + Delta-G solvation = -71.032770 kcal Electronic energy + Delta-G solvation = -30347.454013 eV Core-core repulsion = 26281.015772 eV Total energy + Delta-G solvation = -4066.438241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33460 -39.04518 -38.36100 -36.89730 -34.21095 -33.79909 -32.34659 -31.72014 -31.25455 -31.03009 -30.47476 -26.63705 -26.20528 -24.07731 -23.65992 -23.12547 -23.00722 -21.04211 -20.30955 -19.33530 -17.96913 -17.71061 -17.29865 -16.73442 -16.51490 -16.09718 -15.85818 -15.55391 -15.12587 -14.98860 -14.52332 -14.50192 -13.91017 -13.60539 -13.29237 -13.16491 -13.09428 -13.00522 -12.69290 -12.62970 -12.35213 -12.28040 -12.22714 -12.19696 -11.98975 -11.69107 -11.61774 -11.60651 -11.42668 -11.14690 -11.08632 -11.01130 -10.48546 -10.36118 -10.34114 -10.25024 -9.55318 -9.54707 -8.95442 -8.53616 -8.32413 -8.15117 -7.99375 -6.44863 -3.85602 2.66461 3.14534 3.21113 3.25670 3.32928 3.86548 3.86745 4.02658 4.26519 4.33617 4.49003 4.68197 4.75081 4.88993 4.91150 4.99491 5.03576 5.05232 5.08874 5.14336 5.17866 5.23743 5.24336 5.32031 5.44581 5.46296 5.59064 5.64648 5.66567 5.70898 5.72625 5.83857 5.84651 5.86084 5.96288 5.98742 6.00853 6.02582 6.06284 6.22175 6.25844 6.54321 6.94748 6.97202 7.10002 7.52828 7.54635 7.61842 8.03345 8.29067 8.57633 9.15159 9.50919 10.01959 10.72854 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.002718 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.412377 B =10297.868234 C =12131.486506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.083 0.917 4 C 0.135 3.865 5 N -0.711 5.711 6 C 0.519 3.481 7 O -0.548 6.548 8 C -0.140 4.140 9 H 0.097 0.903 10 C 0.060 3.940 11 N -0.525 5.525 12 C 0.051 3.949 13 C -0.159 4.159 14 C -0.064 4.064 15 C -0.150 4.150 16 C 0.051 3.949 17 N -0.663 5.663 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.581 6.581 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.928 3.072 27 H -0.267 1.267 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.410 0.590 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.353 0.647 48 H 0.085 0.915 49 H 0.044 0.956 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -1.299 -19.876 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.101 0.899 4 C 0.010 3.990 5 N -0.362 5.362 6 C 0.305 3.695 7 O -0.427 6.427 8 C -0.163 4.163 9 H 0.115 0.885 10 C -0.069 4.069 11 N -0.245 5.245 12 C -0.077 4.077 13 C -0.198 4.198 14 C -0.084 4.084 15 C -0.189 4.189 16 C -0.078 4.078 17 N -0.295 5.295 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.465 6.465 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.246 0.754 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.173 0.827 48 H 0.103 0.897 49 H 0.062 0.938 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.116 -2.500 -20.115 20.683 hybrid contribution -0.862 1.143 0.723 1.604 sum 3.254 -1.357 -19.392 19.710 Atomic orbital electron populations 1.22434 0.96294 1.02711 1.02583 1.21850 0.93350 0.98292 0.90806 0.89855 1.21304 0.80364 1.00800 0.96534 1.45838 1.07657 1.59161 1.23519 1.20486 0.89580 0.77288 0.82113 1.90607 1.70414 1.47859 1.33793 1.22103 0.92872 1.02047 0.99264 0.88529 1.22287 0.99594 0.90758 0.94239 1.62482 1.05770 1.15659 1.40591 1.22228 0.97391 0.95475 0.92626 1.22466 1.03832 0.95043 0.98474 1.20872 0.94224 0.96569 0.96697 1.22312 0.95642 1.01306 0.99668 1.22249 0.92356 0.99748 0.93427 1.60184 1.57661 1.09169 1.02509 1.21723 1.00031 0.95628 0.90939 1.19792 0.85284 0.88260 0.84176 1.90540 1.55218 1.16190 1.84580 1.41874 1.57736 1.12432 1.07983 1.19751 1.39851 0.96469 0.86726 0.87845 1.25259 0.97633 0.95766 0.99269 1.69616 1.48713 1.08895 1.27103 0.85813 0.78257 0.79700 0.80675 1.19160 1.20719 1.20787 0.91912 0.91990 0.91926 0.91575 0.91656 0.75438 0.89553 0.89266 0.90686 0.90874 0.88844 0.92202 0.90112 0.91433 0.91630 0.90505 0.90667 0.82658 0.89677 0.93751 0.77520 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.16 37.15 0.34 -1.35 16 2 C 0.07 0.72 2.75 -67.72 -0.19 0.53 16 3 H 0.08 0.82 7.80 -51.93 -0.40 0.42 16 4 C 0.13 1.49 5.37 -4.04 -0.02 1.47 16 5 N -0.71 -8.23 5.14 -60.29 -0.31 -8.54 16 6 C 0.52 6.53 6.60 -10.99 -0.07 6.46 16 7 O -0.55 -8.41 13.76 5.55 0.08 -8.33 16 8 C -0.14 -1.47 2.59 -91.50 -0.24 -1.71 16 9 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 10 C 0.06 0.68 5.60 -3.75 -0.02 0.66 16 11 N -0.53 -5.95 5.22 -234.24 -1.22 -7.17 16 12 C 0.05 0.57 6.09 -3.74 -0.02 0.54 16 13 C -0.16 -1.76 5.43 -26.46 -0.14 -1.91 16 14 C -0.06 -0.66 2.60 -90.01 -0.23 -0.89 16 15 C -0.15 -1.27 5.76 -26.42 -0.15 -1.42 16 16 C 0.05 0.46 6.10 -3.69 -0.02 0.44 16 17 N -0.66 -9.24 5.32 -107.99 -0.57 -9.82 16 18 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 19 C 0.44 9.77 7.82 -10.98 -0.09 9.68 16 20 O -0.58 -15.05 15.78 5.55 0.09 -14.96 16 21 N -0.56 -13.73 5.29 -10.96 -0.06 -13.78 16 22 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 26 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.41 4.65 8.04 -40.82 -0.33 4.32 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.19 7.46 -51.93 -0.39 0.80 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.26 5.60 -51.93 -0.29 0.97 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.35 5.40 8.17 -39.29 -0.32 5.08 16 48 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 49 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 50 H 0.39 9.13 7.90 -40.82 -0.32 8.80 16 51 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 398.75 15.07 6.01 6.01 Total: -1.00 -31.16 398.75 -10.09 -41.25 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -8.67 Total: 17.50 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.13 Total: 5.47 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -1.44 Total: -62.66 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.16 Total: -23.29 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.16 -10.09 -41.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266939583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.784 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds