Wall clock time and date at job start Tue Mar 31 2020 21:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47422 * 2 1 4 4 C 1.53001 * 109.47386 * 240.00316 * 2 1 3 5 5 N 1.46500 * 109.47359 * 184.99796 * 4 2 1 6 6 C 1.34779 * 120.00211 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99663 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99984 * 180.02562 * 6 5 4 9 9 H 1.08997 * 109.57925 * 299.73866 * 8 6 5 10 10 C 1.53140 * 109.57845 * 60.00370 * 8 6 5 11 11 N 1.46910 * 109.38794 * 119.91956 * 10 8 6 12 12 C 1.46939 * 111.05790 * 298.03805 * 11 10 8 13 13 C 1.53123 * 109.37476 * 61.92318 * 12 11 10 14 14 C 1.53385 * 109.68503 * 179.40780 * 8 6 5 15 15 C 1.53392 * 108.60023 * 181.17081 * 14 8 6 16 16 C 1.46947 * 111.05441 * 62.00824 * 11 10 8 17 17 N 1.46897 * 109.47410 * 120.00211 * 2 1 3 18 18 C 1.46907 * 110.99945 * 275.00156 * 17 2 1 19 19 C 1.50703 * 109.46922 * 179.97438 * 18 17 2 20 20 O 1.21289 * 120.00451 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99456 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99655 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00227 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99906 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00060 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99898 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47192 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47079 * 120.00114 * 26 24 22 29 29 H 1.48501 * 109.47392 * 240.00335 * 26 24 22 30 30 H 1.09003 * 109.47090 * 59.99862 * 1 2 3 31 31 H 1.09004 * 109.46734 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47064 * 299.99708 * 1 2 3 33 33 H 1.08999 * 109.46999 * 64.99553 * 4 2 1 34 34 H 1.09001 * 109.47009 * 304.99826 * 4 2 1 35 35 H 0.97003 * 120.00027 * 0.02562 * 5 4 2 36 36 H 1.09002 * 109.48795 * 239.90136 * 10 8 6 37 37 H 1.09002 * 109.48975 * 359.94301 * 10 8 6 38 38 H 1.09000 * 109.47100 * 301.95637 * 12 11 10 39 39 H 1.09000 * 109.51117 * 181.90964 * 12 11 10 40 40 H 1.08999 * 109.57876 * 240.26440 * 13 12 11 41 41 H 1.09000 * 109.68083 * 119.94050 * 13 12 11 42 42 H 1.09005 * 110.11366 * 59.73608 * 14 8 6 43 43 H 1.08994 * 109.57888 * 178.81603 * 15 14 8 44 44 H 1.09003 * 109.57606 * 299.19860 * 15 14 8 45 45 H 1.09000 * 109.49004 * 58.00654 * 16 11 10 46 46 H 1.09000 * 109.48720 * 178.07606 * 16 11 10 47 47 H 1.00903 * 110.99849 * 38.94941 * 17 2 1 48 48 H 1.08996 * 109.47090 * 300.00084 * 18 17 2 49 49 H 1.08997 * 109.46943 * 59.99542 * 18 17 2 50 50 H 0.96999 * 120.00156 * 0.02562 * 21 19 18 51 51 H 0.97004 * 119.99797 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.1731 -1.4290 -2.1908 7 8 3.5700 -1.8840 -3.1396 8 6 5.6749 -1.5376 -2.1301 9 1 6.1119 -0.5399 -2.0889 10 6 6.0823 -2.3281 -0.8834 11 7 6.8295 -3.5265 -1.2884 12 6 5.9970 -4.4147 -2.1113 13 6 5.5866 -3.6835 -3.3925 14 6 6.1904 -2.2736 -3.3732 15 6 7.7160 -2.3959 -3.2719 16 6 8.0668 -3.1639 -1.9934 17 7 2.0197 -0.6925 1.1994 18 6 2.0825 0.2226 2.3469 19 6 2.5874 -0.5219 3.5560 20 8 2.8679 -1.6988 3.4702 21 7 2.7283 0.1204 4.7325 22 6 3.1881 -0.5567 5.8323 23 1 3.4379 -1.6046 5.7559 24 6 3.3329 0.1054 7.0454 25 7 3.0286 1.3803 7.1385 26 14 3.9588 -0.8174 8.5441 27 1 4.2276 -2.2313 8.1783 28 1 5.2124 -0.1846 9.0271 29 1 2.9345 -0.7698 9.6182 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7516 -0.1582 -2.1370 34 1 1.6054 -1.7197 -1.2952 35 1 3.9824 -0.4627 -0.4316 36 1 6.7111 -1.7052 -0.2472 37 1 5.1894 -2.6251 -0.3332 38 1 5.1050 -4.6976 -1.5523 39 1 6.5637 -5.3095 -2.3688 40 1 4.4999 -3.6148 -3.4417 41 1 5.9578 -4.2279 -4.2608 42 1 5.9053 -1.7314 -4.2749 43 1 8.0975 -2.9358 -4.1384 44 1 8.1605 -1.4014 -3.2342 45 1 8.6817 -2.5355 -1.3491 46 1 8.6168 -4.0689 -2.2516 47 1 1.4495 -1.4979 1.4100 48 1 2.7588 1.0462 2.1182 49 1 1.0871 0.6163 2.5525 50 1 2.5043 1.0617 4.8010 51 1 3.1293 1.8423 7.9855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266939583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:22 Heat of formation + Delta-G solvation = -95.662964 kcal Electronic energy + Delta-G solvation = -30348.522058 eV Core-core repulsion = 26281.015772 eV Total energy + Delta-G solvation = -4067.506286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.21740 -40.26823 -39.79676 -38.07187 -35.95103 -35.07671 -33.27487 -33.19304 -32.61186 -31.83162 -31.51756 -27.94775 -27.37081 -25.67502 -24.60761 -23.97648 -23.81101 -21.98692 -21.25869 -21.07592 -19.89647 -18.66164 -18.19553 -17.81367 -17.44336 -17.37400 -16.93349 -16.61506 -16.50004 -16.26129 -15.99438 -15.78184 -15.37954 -14.96189 -14.48671 -14.26200 -13.94794 -13.90016 -13.73443 -13.62561 -13.46479 -13.42916 -13.15200 -13.11636 -13.10844 -12.99697 -12.90191 -12.74361 -12.50285 -12.46013 -12.37040 -12.10769 -11.99653 -11.89039 -11.48764 -11.35410 -11.10447 -10.53731 -10.30912 -9.98255 -9.94271 -9.33321 -9.17903 -8.44983 -5.92759 1.37539 1.43331 1.56845 1.67159 2.09576 2.28280 2.31382 2.91457 3.02975 3.23169 3.50091 3.54460 3.67431 3.84436 3.86609 4.05281 4.07626 4.13437 4.22890 4.28561 4.32852 4.34607 4.36717 4.39828 4.49322 4.50610 4.63097 4.63800 4.66302 4.77573 4.83835 4.88746 4.97760 4.99455 5.02169 5.08717 5.13973 5.20758 5.21948 5.25060 5.38721 5.43697 5.59123 5.90850 6.08059 6.11840 6.16645 6.36289 6.63019 6.65027 7.16050 7.31593 7.60370 8.15957 8.72552 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.002718 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.412377 B =10297.868234 C =12131.486506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.100 0.900 4 C 0.137 3.863 5 N -0.707 5.707 6 C 0.515 3.485 7 O -0.579 6.579 8 C -0.133 4.133 9 H 0.118 0.882 10 C 0.065 3.935 11 N -0.540 5.540 12 C 0.054 3.946 13 C -0.155 4.155 14 C -0.065 4.065 15 C -0.141 4.141 16 C 0.049 3.951 17 N -0.672 5.672 18 C 0.066 3.934 19 C 0.439 3.561 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.330 4.330 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.988 3.012 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.412 0.588 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.344 0.656 48 H 0.109 0.891 49 H 0.066 0.934 50 H 0.396 0.604 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 -0.009 -20.466 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.118 0.882 4 C 0.012 3.988 5 N -0.357 5.357 6 C 0.302 3.698 7 O -0.460 6.460 8 C -0.156 4.156 9 H 0.136 0.864 10 C -0.065 4.065 11 N -0.260 5.260 12 C -0.075 4.075 13 C -0.194 4.194 14 C -0.084 4.084 15 C -0.180 4.180 16 C -0.079 4.079 17 N -0.304 5.304 18 C -0.066 4.066 19 C 0.227 3.773 20 O -0.508 6.508 21 N -0.212 5.212 22 C -0.459 4.459 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.562 5.562 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.198 1.198 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.248 0.752 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.163 0.837 48 H 0.127 0.873 49 H 0.084 0.916 50 H 0.230 0.770 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.970 -1.170 -20.709 21.329 hybrid contribution -1.166 0.696 0.850 1.602 sum 3.804 -0.474 -19.859 20.226 Atomic orbital electron populations 1.22384 0.95024 1.02706 1.03465 1.21854 0.94269 0.98458 0.88695 0.88157 1.21312 0.80060 1.00146 0.97255 1.45862 1.07928 1.58648 1.23265 1.20881 0.90510 0.76687 0.81721 1.90597 1.71207 1.49132 1.35045 1.22101 0.91402 1.03051 0.99039 0.86430 1.22185 0.98738 0.91064 0.94470 1.62481 1.06483 1.15723 1.41334 1.22173 0.96885 0.96084 0.92334 1.22375 1.02122 0.96032 0.98839 1.20887 0.95669 0.95683 0.96188 1.22259 0.93895 1.02202 0.99668 1.22346 0.91305 1.00517 0.93709 1.60156 1.58372 1.08998 1.02864 1.21576 1.01269 0.95293 0.88483 1.20921 0.83271 0.87995 0.85155 1.90516 1.56467 1.18358 1.85444 1.41934 1.58452 1.12592 1.08222 1.19661 1.41848 0.95859 0.88564 0.90476 1.25968 0.97361 0.96575 1.01269 1.69667 1.48862 1.09637 1.28001 0.84932 0.78183 0.78108 0.77514 1.19893 1.19631 1.19772 0.90053 0.92525 0.91941 0.90571 0.93333 0.75172 0.88670 0.91968 0.92798 0.89548 0.91613 0.91104 0.90690 0.90344 0.90203 0.89699 0.89758 0.83710 0.87262 0.91582 0.76995 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 9.16 71.98 0.66 -2.29 16 2 C 0.08 1.49 2.75 44.91 0.12 1.61 16 3 H 0.10 1.66 7.80 -2.39 -0.02 1.64 16 4 C 0.14 2.93 5.37 86.38 0.46 3.39 16 5 N -0.71 -16.04 5.14 -463.05 -2.38 -18.42 16 6 C 0.51 12.93 6.60 87.66 0.58 13.51 16 7 O -0.58 -18.09 13.76 -3.04 -0.04 -18.13 16 8 C -0.13 -2.69 2.59 -11.36 -0.03 -2.72 16 9 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 10 C 0.06 1.45 5.60 86.35 0.48 1.93 16 11 N -0.54 -11.90 5.22 -895.00 -4.67 -16.58 16 12 C 0.05 1.19 6.09 86.34 0.53 1.72 16 13 C -0.15 -3.42 5.43 30.77 0.17 -3.25 16 14 C -0.06 -1.26 2.60 -10.40 -0.03 -1.29 16 15 C -0.14 -2.05 5.76 30.79 0.18 -1.88 16 16 C 0.05 0.80 6.10 86.36 0.53 1.33 16 17 N -0.67 -18.12 5.32 -495.57 -2.63 -20.76 16 18 C 0.07 1.97 5.97 85.56 0.51 2.49 16 19 C 0.44 19.58 7.82 87.66 0.69 20.26 16 20 O -0.62 -32.97 15.78 -3.06 -0.05 -33.01 16 21 N -0.57 -28.22 5.29 -306.98 -1.62 -29.85 16 22 C -0.33 -18.30 9.68 84.04 0.81 -17.48 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 25 N -0.92 -48.66 13.05 21.66 0.28 -48.38 16 26 Si 0.99 42.42 29.55 68.60 2.03 44.44 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.06 1.07 7.45 -2.39 -0.02 1.05 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.41 9.01 8.04 -92.71 -0.75 8.26 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 1.72 7.46 -2.39 -0.02 1.70 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 1.84 5.60 -2.39 -0.01 1.83 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.57 8.11 -2.38 -0.02 1.55 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.34 10.51 8.17 -89.69 -0.73 9.77 16 48 H 0.11 2.81 8.05 -2.39 -0.02 2.79 16 49 H 0.07 1.74 7.44 -2.39 -0.02 1.72 16 50 H 0.40 18.42 7.90 -92.71 -0.73 17.69 16 51 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -68.69 398.75 -4.22 -72.91 By element: Atomic # 1 Polarization: 51.86 SS G_CDS: -1.26 Total: 50.60 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 6.13 Total: 17.17 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -11.03 Total: -133.98 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.09 Total: -51.14 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -68.69 -4.22 -72.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266939583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.753 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds