Wall clock time and date at job start Tue Mar 31 2020 22:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48720 * 111.01831 * 2 1 4 4 C 1.54381 * 104.51692 * 158.96284 * 3 2 1 5 5 C 1.54257 * 105.14978 * 336.27274 * 4 3 2 6 6 C 1.48567 * 110.99718 * 115.50982 * 2 1 3 7 7 H 1.09004 * 110.50861 * 319.79003 * 6 2 1 8 8 C 1.50695 * 110.41156 * 82.17828 * 6 2 1 9 9 O 1.21282 * 120.00222 * 15.17489 * 8 6 2 10 10 N 1.34780 * 119.99978 * 195.17126 * 8 6 2 11 11 C 1.46501 * 119.99832 * 179.97438 * 10 8 6 12 12 H 1.09005 * 109.50185 * 35.00698 * 11 10 8 13 13 C 1.53112 * 109.50745 * 274.92310 * 11 10 8 14 14 C 1.53122 * 109.16479 * 182.40572 * 13 11 10 15 15 C 1.53034 * 109.27582 * 57.65489 * 14 13 11 16 16 N 1.46856 * 109.52467 * 300.82318 * 15 14 13 17 17 C 1.46904 * 110.99959 * 185.83831 * 16 15 14 18 18 C 1.50693 * 109.47372 * 293.95542 * 17 16 15 19 19 O 1.21296 * 119.99814 * 359.97438 * 18 17 16 20 20 N 1.34771 * 120.00275 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00538 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99333 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00131 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99811 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00141 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46824 * 90.00477 * 25 23 21 27 27 H 1.48498 * 109.47199 * 210.00190 * 25 23 21 28 28 H 1.48501 * 109.47169 * 330.00241 * 25 23 21 29 29 C 1.46843 * 111.22991 * 61.72351 * 16 15 14 30 30 H 1.09001 * 109.47412 * 304.49367 * 1 2 3 31 31 H 1.09003 * 109.46556 * 64.49268 * 1 2 3 32 32 H 1.08995 * 109.47730 * 184.49237 * 1 2 3 33 33 H 1.09004 * 110.38960 * 40.24251 * 3 2 1 34 34 H 1.08996 * 110.50963 * 277.74694 * 3 2 1 35 35 H 1.09002 * 110.32526 * 217.32092 * 4 3 2 36 36 H 1.08998 * 110.32190 * 95.21733 * 4 3 2 37 37 H 1.08995 * 110.32672 * 118.84838 * 5 4 3 38 38 H 1.09009 * 110.32136 * 241.05045 * 5 4 3 39 39 H 0.96999 * 119.99973 * 0.02562 * 10 8 6 40 40 H 1.09000 * 109.52260 * 302.31089 * 13 11 10 41 41 H 1.09006 * 109.52588 * 62.50231 * 13 11 10 42 42 H 1.08995 * 109.50516 * 177.59951 * 14 13 11 43 43 H 1.08997 * 109.50005 * 297.68062 * 14 13 11 44 44 H 1.09005 * 109.46708 * 60.83622 * 15 14 13 45 45 H 1.09000 * 109.46327 * 180.80650 * 15 14 13 46 46 H 1.09005 * 109.46684 * 53.95790 * 17 16 15 47 47 H 1.09002 * 109.46884 * 173.95081 * 17 16 15 48 48 H 0.97007 * 119.99931 * 0.02562 * 20 18 17 49 49 H 0.96992 * 119.99919 * 180.02562 * 24 23 21 50 50 H 1.09005 * 109.49585 * 178.28530 * 29 16 15 51 51 H 1.08996 * 109.43264 * 58.31274 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0024 1.3883 0.0000 4 6 3.4433 1.2492 0.5365 5 6 3.4432 -0.0562 1.3584 6 6 2.0014 -0.5973 1.2518 7 1 1.4103 -0.2763 2.1096 8 6 2.0102 -2.1011 1.1542 9 8 1.8828 -2.6395 0.0750 10 7 2.1599 -2.8477 2.2663 11 6 2.1680 -4.3096 2.1714 12 1 2.6496 -4.6113 1.2412 13 6 0.7287 -4.8314 2.1946 14 6 0.7482 -6.3620 2.1558 15 6 1.5580 -6.8872 3.3434 16 7 2.9271 -6.3604 3.2753 17 6 3.7717 -6.9526 4.3213 18 6 3.2825 -6.5059 5.6748 19 8 2.3248 -5.7664 5.7598 20 7 3.9097 -6.9271 6.7908 21 6 3.4650 -6.5203 8.0222 22 1 2.6118 -5.8625 8.0979 23 6 4.1121 -6.9541 9.1727 24 7 3.6855 -6.5645 10.3531 25 14 5.5874 -8.0923 9.0418 26 1 6.8294 -7.2838 8.9472 27 1 5.6519 -8.9596 10.2454 28 1 5.4538 -8.9383 7.8287 29 6 2.9374 -4.8944 3.3581 30 1 -0.3634 0.5820 0.8470 31 1 -0.3632 0.4426 -0.9276 32 1 -0.3634 -1.0244 0.0805 33 1 1.4106 2.0225 0.6601 34 1 2.0109 1.7941 -1.0116 35 1 3.6937 2.0976 1.1733 36 1 4.1497 1.1758 -0.2904 37 1 4.1483 -0.7709 0.9341 38 1 3.6936 0.1516 2.3988 39 1 2.2615 -2.4171 3.1295 40 1 0.2345 -4.4965 3.1066 41 1 0.1895 -4.4519 1.3266 42 1 -0.2721 -6.7406 2.2151 43 1 1.2071 -6.6966 1.2254 44 1 1.0903 -6.5639 4.2734 45 1 1.5859 -7.9764 3.3107 46 1 3.7208 -8.0396 4.2571 47 1 4.8030 -6.6283 4.1824 48 1 4.6764 -7.5176 6.7228 49 1 4.1374 -6.8671 11.1562 50 1 3.9666 -4.5360 3.3357 51 1 2.4638 -4.5803 4.2882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267956811.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:10 Heat of formation + Delta-G solvation = -52.262562 kcal Electronic energy + Delta-G solvation = -30407.191525 eV Core-core repulsion = 26341.567221 eV Total energy + Delta-G solvation = -4065.624304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45274 -39.56506 -38.26144 -37.17767 -34.67724 -33.95338 -32.64426 -32.37003 -31.77788 -30.39950 -28.74937 -27.50343 -25.95124 -24.63884 -23.43968 -22.72764 -21.73093 -21.27212 -20.19827 -19.72352 -19.44268 -18.30207 -17.48829 -16.52852 -16.06355 -16.03739 -15.51976 -15.07556 -14.88773 -14.75984 -14.51668 -14.42168 -14.15070 -14.06675 -13.69757 -13.63953 -13.36181 -13.05215 -12.92748 -12.69157 -12.52218 -12.24611 -12.22526 -11.93611 -11.85528 -11.72098 -11.43673 -11.39741 -11.27627 -10.98760 -10.91248 -10.68282 -10.61278 -10.58296 -10.29932 -10.09727 -9.69277 -9.59357 -9.37393 -8.94458 -8.76495 -8.27717 -7.55328 -6.42127 -3.93548 2.64167 2.95470 2.96183 3.00300 3.09161 3.57886 3.80005 4.01306 4.24934 4.28019 4.37016 4.59160 4.61533 4.81294 4.83534 5.00907 5.08654 5.10712 5.11553 5.13563 5.19961 5.23018 5.32652 5.36652 5.46126 5.55982 5.66665 5.66949 5.73061 5.73933 5.75312 5.78413 5.81933 5.85711 5.89954 6.09914 6.14830 6.24765 6.33411 6.41628 6.46361 6.55246 6.64116 6.67081 7.21660 7.33964 7.45924 7.57595 8.03855 8.30039 8.46721 8.83293 9.31221 9.69103 10.70556 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.002469 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.567710 B =11339.670169 C =12314.055064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.490 5.490 3 C 0.032 3.968 4 C -0.123 4.123 5 C -0.113 4.113 6 C 0.041 3.959 7 H 0.074 0.926 8 C 0.523 3.477 9 O -0.520 6.520 10 N -0.725 5.725 11 C 0.154 3.846 12 H 0.089 0.911 13 C -0.127 4.127 14 C -0.109 4.109 15 C 0.039 3.961 16 N -0.509 5.509 17 C 0.039 3.961 18 C 0.414 3.586 19 O -0.577 6.577 20 N -0.582 5.582 21 C -0.308 4.308 22 H 0.119 0.881 23 C 0.043 3.957 24 N -0.878 5.878 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.268 1.268 29 C 0.027 3.973 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.399 0.601 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.372 0.628 49 H 0.275 0.725 50 H 0.067 0.933 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 10.401 -17.625 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.214 5.214 3 C -0.096 4.096 4 C -0.161 4.161 5 C -0.151 4.151 6 C -0.071 4.071 7 H 0.091 0.909 8 C 0.308 3.692 9 O -0.394 6.394 10 N -0.377 5.377 11 C 0.049 3.951 12 H 0.107 0.893 13 C -0.165 4.165 14 C -0.147 4.147 15 C -0.089 4.089 16 N -0.232 5.232 17 C -0.093 4.093 18 C 0.200 3.800 19 O -0.462 6.462 20 N -0.220 5.220 21 C -0.437 4.437 22 H 0.136 0.864 23 C -0.161 4.161 24 N -0.517 5.517 25 Si 0.706 3.294 26 H -0.195 1.195 27 H -0.201 1.201 28 H -0.193 1.193 29 C -0.101 4.101 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.233 0.767 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.110 0.890 47 H 0.109 0.891 48 H 0.205 0.795 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.279 10.051 -19.069 21.593 hybrid contribution 0.579 -0.093 2.201 2.278 sum -0.700 9.958 -16.867 19.600 Atomic orbital electron populations 1.22533 0.87385 1.02469 1.01004 1.65100 1.08536 1.14619 1.33173 1.23198 0.95225 0.89622 1.01572 1.22287 0.96782 0.97155 0.99862 1.22243 0.94276 0.97527 1.01103 1.22665 0.98069 0.92866 0.93465 0.90871 1.20182 0.76455 0.88440 0.84159 1.90695 1.47671 1.73459 1.27552 1.46057 1.74583 1.07231 1.09797 1.20887 0.96071 0.78020 1.00088 0.89304 1.21913 0.96612 0.96118 1.01893 1.21479 0.99545 0.94776 0.98907 1.22291 0.88714 0.98908 0.98982 1.62323 1.11340 1.05722 1.43819 1.22099 0.98198 1.00638 0.88323 1.21058 0.86653 0.86097 0.86145 1.90420 1.29503 1.39906 1.86418 1.42419 1.28956 1.43947 1.06689 1.19438 1.15373 1.28514 0.80401 0.86355 1.25083 0.98214 0.97821 0.94981 1.69622 1.40516 1.44060 0.97489 0.86664 0.83081 0.81101 0.78545 1.19524 1.20089 1.19350 1.22582 1.00301 0.88437 0.98780 0.95364 0.90865 0.90993 0.93594 0.89626 0.90896 0.90605 0.90327 0.90218 0.76698 0.91791 0.92000 0.91591 0.91530 0.91248 0.91488 0.89022 0.89102 0.79549 0.91491 0.91467 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.45 60.06 0.57 0.71 16 2 N -0.49 -5.25 4.92 -231.58 -1.14 -6.39 16 3 C 0.03 0.25 6.51 -2.09 -0.01 0.24 16 4 C -0.12 -0.89 6.99 -25.35 -0.18 -1.07 16 5 C -0.11 -0.97 6.54 -25.35 -0.17 -1.13 16 6 C 0.04 0.43 2.68 -67.22 -0.18 0.25 16 7 H 0.07 0.65 7.97 -51.93 -0.41 0.24 16 8 C 0.52 6.87 6.68 -10.99 -0.07 6.80 16 9 O -0.52 -8.81 16.23 5.56 0.09 -8.72 16 10 N -0.72 -8.89 5.08 -53.73 -0.27 -9.16 16 11 C 0.15 2.16 2.62 -67.85 -0.18 1.98 16 12 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.13 -1.76 5.58 -26.61 -0.15 -1.91 16 14 C -0.11 -1.45 6.09 -26.65 -0.16 -1.62 16 15 C 0.04 0.60 5.10 -3.83 -0.02 0.58 16 16 N -0.51 -7.89 4.86 -236.10 -1.15 -9.04 16 17 C 0.04 0.63 5.86 -4.98 -0.03 0.60 16 18 C 0.41 8.67 7.20 -10.99 -0.08 8.59 16 19 O -0.58 -13.77 11.20 5.54 0.06 -13.71 16 20 N -0.58 -13.14 5.09 -10.97 -0.06 -13.20 16 21 C -0.31 -8.35 10.16 -14.93 -0.15 -8.50 16 22 H 0.12 3.67 7.39 -52.49 -0.39 3.29 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -24.91 13.96 55.50 0.77 -24.14 16 25 Si 0.88 18.76 27.73 -169.99 -4.71 14.04 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 29 C 0.03 0.42 4.45 -3.83 -0.02 0.40 16 30 H 0.03 0.23 7.98 -51.93 -0.41 -0.19 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 33 H 0.05 0.32 7.91 -51.93 -0.41 -0.09 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 38 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 39 H 0.40 4.22 8.60 -40.82 -0.35 3.87 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.29 6.00 -51.93 -0.31 0.98 16 45 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 46 H 0.09 1.29 8.06 -51.93 -0.42 0.87 16 47 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 49 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 51 H 0.09 1.65 5.36 -51.93 -0.28 1.37 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -32.47 395.54 -10.04 -42.51 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -8.67 Total: 14.89 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.92 Total: 6.94 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -1.84 Total: -61.92 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.15 Total: -22.43 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.71 Total: 14.04 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.47 -10.04 -42.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267956811.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.750 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds