Wall clock time and date at job start Tue Mar 31 2020 22:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46008 * 118.53345 * 2 1 4 4 C 1.52996 * 110.03463 * 161.81915 * 3 2 1 5 5 N 1.47187 * 108.72164 * 50.30522 * 4 3 2 6 6 C 1.46900 * 111.00225 * 167.61615 * 5 4 3 7 7 C 1.50699 * 109.47315 * 188.93474 * 6 5 4 8 8 O 1.21284 * 119.99932 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00309 * 180.02562 * 7 6 5 10 10 C 1.46937 * 120.60371 * 5.56605 * 9 7 6 11 11 C 1.53189 * 108.77294 * 233.57665 * 10 9 7 12 12 C 1.53046 * 109.33861 * 305.41522 * 11 10 9 13 13 C 1.53035 * 109.54052 * 61.34655 * 12 11 10 14 14 C 1.46930 * 120.63401 * 185.58500 * 9 7 6 15 15 H 1.08993 * 109.70253 * 246.24872 * 14 9 7 16 16 C 1.53002 * 109.58264 * 6.60489 * 14 9 7 17 17 N 1.46500 * 109.46909 * 178.11275 * 16 14 9 18 18 C 1.36935 * 119.99987 * 185.04284 * 17 16 14 19 19 H 1.08002 * 120.00012 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00105 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99984 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00097 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.46966 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47030 * 120.00568 * 22 20 18 25 25 H 1.48502 * 109.47030 * 240.00230 * 22 20 18 26 26 C 1.46897 * 110.17342 * 290.98682 * 5 4 3 27 27 C 1.33715 * 118.53656 * 179.97438 * 2 1 3 28 28 O 1.21282 * 118.62277 * 1.71187 * 27 2 1 29 29 H 1.09001 * 109.46663 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47172 * 300.01903 * 1 2 3 31 31 H 1.09003 * 109.46816 * 60.02169 * 1 2 3 32 32 H 1.08998 * 109.37526 * 281.99077 * 3 2 1 33 33 H 1.09001 * 109.37936 * 41.64472 * 3 2 1 34 34 H 1.08998 * 109.61412 * 290.52212 * 4 3 2 35 35 H 1.09001 * 109.58675 * 170.06686 * 4 3 2 36 36 H 1.09007 * 109.46897 * 68.93798 * 6 5 4 37 37 H 1.09001 * 109.47133 * 308.94112 * 6 5 4 38 38 H 1.09000 * 109.56159 * 113.80447 * 10 9 7 39 39 H 1.09006 * 109.61344 * 353.37889 * 10 9 7 40 40 H 1.09000 * 109.50042 * 185.44097 * 11 10 9 41 41 H 1.09008 * 109.49934 * 65.37867 * 11 10 9 42 42 H 1.08997 * 109.45622 * 181.36719 * 12 11 10 43 43 H 1.08996 * 109.45386 * 301.34121 * 12 11 10 44 44 H 1.09008 * 109.49753 * 58.58530 * 13 12 11 45 45 H 1.09002 * 109.50295 * 178.68481 * 13 12 11 46 46 H 1.08996 * 109.47057 * 298.11069 * 16 14 9 47 47 H 1.09001 * 109.47302 * 58.11054 * 16 14 9 48 48 H 0.96996 * 120.00017 * 5.03859 * 17 16 14 49 49 H 0.97001 * 120.00109 * 179.97438 * 21 20 18 50 50 H 1.08996 * 109.38888 * 170.45082 * 26 5 4 51 51 H 1.09003 * 109.38627 * 290.24442 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6126 1.0909 0.4485 5 7 4.2095 -0.0015 -0.3369 6 6 5.6677 -0.0387 -0.1637 7 6 6.2651 -1.0171 -1.1420 8 8 5.5467 -1.6233 -1.9084 9 7 7.5975 -1.2184 -1.1652 10 6 8.4673 -0.5850 -0.1646 11 6 9.5746 0.1852 -0.8908 12 6 10.3029 -0.7587 -1.8504 13 6 9.3173 -1.2872 -2.8950 14 6 8.2074 -2.0748 -2.1916 15 1 8.6303 -2.9640 -1.7243 16 6 7.1453 -2.4876 -3.2125 17 7 7.7652 -3.3041 -4.2591 18 6 7.0282 -3.7050 -5.3413 19 1 5.9898 -3.4196 -5.4231 20 6 7.6157 -4.4781 -6.3332 21 7 8.8813 -4.8255 -6.2338 22 14 6.6101 -5.0256 -7.8092 23 1 5.2245 -4.5066 -7.6841 24 1 7.2264 -4.4958 -9.0520 25 1 6.5803 -6.5093 -7.8651 26 6 3.6019 -1.2854 0.0377 27 6 2.1039 -1.1747 0.0005 28 8 1.4466 -2.1935 -0.0308 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5141 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 2.1476 1.7025 -1.0058 33 1 1.6602 1.9675 0.6833 34 1 3.6372 0.8353 1.5078 35 1 4.1722 2.0108 0.2792 36 1 5.9049 -0.3512 0.8533 37 1 6.0805 0.9538 -0.3444 38 1 8.9114 -1.3515 0.4705 39 1 7.8825 0.1038 0.4451 40 1 10.2821 0.5795 -0.1613 41 1 9.1357 1.0089 -1.4539 42 1 11.1070 -0.2187 -2.3503 43 1 10.7207 -1.5949 -1.2898 44 1 8.8803 -0.4499 -3.4393 45 1 9.8415 -1.9410 -3.5921 46 1 6.3673 -3.0656 -2.7138 47 1 6.7053 -1.5963 -3.6598 48 1 8.6977 -3.5607 -4.1854 49 1 9.2918 -5.3661 -6.9267 50 1 3.9251 -2.0564 -0.6616 51 1 3.9183 -1.5551 1.0453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272974053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:37 Heat of formation + Delta-G solvation = -15.989288 kcal Electronic energy + Delta-G solvation = -31033.216284 eV Core-core repulsion = 26969.164908 eV Total energy + Delta-G solvation = -4064.051377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88682 -40.15607 -37.82333 -36.86804 -35.42376 -34.64021 -32.83322 -32.01572 -30.45160 -29.76085 -29.48256 -27.06270 -25.86551 -24.88818 -24.33866 -23.27274 -22.66611 -21.02696 -20.74683 -18.93329 -18.89023 -17.46873 -17.00727 -16.89291 -16.65847 -16.27932 -15.73780 -15.34216 -14.95361 -14.87855 -14.51269 -14.30569 -14.22611 -14.05033 -13.59159 -13.47330 -13.34388 -13.21741 -12.99336 -12.77325 -12.66528 -12.58301 -12.35664 -12.16209 -11.88841 -11.78985 -11.64737 -11.50015 -10.97150 -10.91487 -10.80183 -10.67273 -10.49318 -10.32441 -9.97379 -9.88643 -9.60631 -9.05449 -8.93109 -8.80462 -8.47398 -8.33226 -6.70698 -5.62049 -2.87900 2.48309 2.72340 2.77259 2.90457 3.49825 3.54273 3.60243 3.64012 4.26582 4.35019 4.41283 4.65814 4.73525 4.76039 4.76797 4.84308 4.93590 4.98728 5.03150 5.10984 5.12791 5.15516 5.23744 5.25323 5.36098 5.38453 5.48725 5.60288 5.60875 5.70475 5.72353 5.79515 5.82982 5.98845 6.01235 6.12232 6.24627 6.27117 6.32014 6.38366 6.53540 6.59070 6.80473 7.14541 7.18953 7.34189 7.58747 7.90329 7.99847 8.41141 8.59846 9.68895 10.27853 10.62615 11.61686 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.003542 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.250535 B = 7902.943340 C =10463.702566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.611 5.611 3 C 0.121 3.879 4 C 0.035 3.965 5 N -0.514 5.514 6 C 0.036 3.964 7 C 0.506 3.494 8 O -0.495 6.495 9 N -0.608 5.608 10 C 0.109 3.891 11 C -0.134 4.134 12 C -0.121 4.121 13 C -0.125 4.125 14 C 0.141 3.859 15 H 0.069 0.931 16 C 0.161 3.839 17 N -0.738 5.738 18 C -0.222 4.222 19 H 0.071 0.929 20 C -0.020 4.020 21 N -0.939 5.939 22 Si 0.904 3.096 23 H -0.280 1.280 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.035 3.965 27 C 0.527 3.473 28 O -0.547 6.547 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.030 0.970 48 H 0.378 0.622 49 H 0.252 0.748 50 H 0.138 0.862 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 18.909 21.365 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.345 5.345 3 C -0.002 4.002 4 C -0.093 4.093 5 N -0.240 5.240 6 C -0.095 4.095 7 C 0.292 3.708 8 O -0.368 6.368 9 N -0.344 5.344 10 C -0.015 4.015 11 C -0.172 4.172 12 C -0.159 4.159 13 C -0.164 4.164 14 C 0.039 3.961 15 H 0.087 0.913 16 C 0.034 3.966 17 N -0.384 5.384 18 C -0.353 4.353 19 H 0.089 0.911 20 C -0.215 4.215 21 N -0.590 5.590 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.220 1.220 26 C -0.095 4.095 27 C 0.315 3.685 28 O -0.424 6.424 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.048 0.952 48 H 0.212 0.788 49 H 0.062 0.938 50 H 0.156 0.844 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.862 18.109 20.326 27.847 hybrid contribution 0.241 -0.282 0.046 0.374 sum -5.621 17.827 20.372 27.648 Atomic orbital electron populations 1.21731 0.79482 1.04646 1.01115 1.47303 1.07332 1.06212 1.73670 1.21475 0.91304 0.84876 1.02532 1.22549 0.95046 0.96069 0.95683 1.62139 1.03088 1.03436 1.55288 1.22136 0.88340 1.00969 0.98015 1.20338 0.82131 0.83330 0.85005 1.90834 1.59689 1.46681 1.39601 1.48176 1.05783 1.49414 1.31012 1.21712 0.92477 0.96716 0.90563 1.21920 0.97548 0.98666 0.99111 1.21552 0.98110 0.98890 0.97307 1.21925 0.96117 1.00691 0.97642 1.21585 0.94804 0.91405 0.88350 0.91271 1.21288 0.92012 0.95103 0.88149 1.42565 1.11964 1.61490 1.22333 1.19296 0.94179 1.24718 0.97126 0.91139 1.24686 0.96208 1.01490 0.99090 1.69665 1.10959 1.43056 1.35289 0.86128 0.79286 0.78047 0.82949 1.20560 1.22085 1.22024 1.22546 0.90127 0.94275 1.02550 1.20125 0.90308 0.82935 0.75123 1.90723 1.66711 1.34613 1.50304 0.89138 0.92373 0.92129 0.90593 0.90215 0.93554 0.88324 0.91819 0.87452 0.91343 0.90346 0.91121 0.91521 0.91834 0.91931 0.91716 0.89527 0.93174 0.95235 0.78836 0.93850 0.84408 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.55 59.85 0.63 1.28 16 2 N -0.61 -6.53 3.23 -182.46 -0.59 -7.12 16 3 C 0.12 0.86 6.64 -4.31 -0.03 0.83 16 4 C 0.03 0.23 5.60 -3.67 -0.02 0.21 16 5 N -0.51 -5.45 4.47 -237.55 -1.06 -6.51 16 6 C 0.04 0.33 3.79 -4.98 -0.02 0.31 16 7 C 0.51 7.16 7.29 -10.99 -0.08 7.08 16 8 O -0.49 -9.45 9.86 5.55 0.05 -9.39 16 9 N -0.61 -8.03 2.97 -165.21 -0.49 -8.52 16 10 C 0.11 0.94 6.35 -3.71 -0.02 0.91 16 11 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 12 C -0.12 -1.36 5.88 -26.69 -0.16 -1.52 16 13 C -0.13 -1.96 5.10 -26.61 -0.14 -2.09 16 14 C 0.14 2.39 3.07 -67.60 -0.21 2.19 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 16 C 0.16 3.63 4.14 -4.04 -0.02 3.61 16 17 N -0.74 -19.79 5.27 -59.91 -0.32 -20.11 16 18 C -0.22 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 2.13 7.83 -52.49 -0.41 1.72 16 20 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 21 N -0.94 -29.38 13.06 55.49 0.72 -28.65 16 22 Si 0.90 23.79 29.55 -169.99 -5.02 18.77 16 23 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 25 H -0.29 -7.71 7.11 56.52 0.40 -7.30 16 26 C 0.03 0.45 5.14 -5.19 -0.03 0.42 16 27 C 0.53 7.44 7.57 -11.67 -0.09 7.35 16 28 O -0.55 -9.80 16.07 5.56 0.09 -9.71 16 29 H 0.09 1.00 6.67 -51.93 -0.35 0.66 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.05 0.27 8.08 -51.93 -0.42 -0.15 16 35 H 0.10 0.42 7.91 -51.93 -0.41 0.01 16 36 H 0.06 0.44 7.63 -51.93 -0.40 0.04 16 37 H 0.11 0.73 7.71 -51.93 -0.40 0.33 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 45 H 0.09 1.57 7.08 -51.93 -0.37 1.20 16 46 H 0.05 1.25 6.24 -51.93 -0.32 0.92 16 47 H 0.03 0.73 7.24 -51.93 -0.38 0.35 16 48 H 0.38 10.33 6.66 -40.82 -0.27 10.06 16 49 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.14 2.26 6.01 -51.93 -0.31 1.95 16 51 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -38.04 389.38 -9.87 -47.91 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.55 Total: 5.70 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -0.58 Total: 11.77 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.73 Total: -70.91 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.14 Total: -19.10 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.02 Total: 18.77 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.04 -9.87 -47.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272974053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.918 kcal (2) G-P(sol) polarization free energy of solvation -38.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds