Wall clock time and date at job start Tue Mar 31 2020 21:03:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09006 * 109.47144 * 2 1
4 4 C 1.52996 * 109.47295 * 239.99539 * 2 1 3
5 5 N 1.46896 * 109.46915 * 185.00414 * 4 2 1
6 6 C 1.46902 * 110.99580 * 179.97438 * 5 4 2
7 7 C 1.50705 * 109.47114 * 179.97438 * 6 5 4
8 8 O 1.21300 * 120.00035 * 359.97438 * 7 6 5
9 9 N 1.34777 * 120.00131 * 180.02562 * 7 6 5
10 10 C 1.37097 * 119.99855 * 179.97438 * 9 7 6
11 11 H 1.07999 * 120.00311 * 0.02562 * 10 9 7
12 12 C 1.38948 * 120.00165 * 179.97438 * 10 9 7
13 13 N 1.31421 * 119.99634 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 120.00506 * 180.02562 * 12 10 9
15 15 H 1.48500 * 109.46850 * 59.99712 * 14 12 10
16 16 H 1.48496 * 109.47072 * 180.02562 * 14 12 10
17 17 H 1.48502 * 109.46602 * 300.00318 * 14 12 10
18 18 N 1.46504 * 109.46559 * 119.99208 * 2 1 3
19 19 C 1.34771 * 120.00415 * 274.99969 * 18 2 1
20 20 O 1.21284 * 119.99939 * 0.02562 * 19 18 2
21 21 C 1.50701 * 120.00435 * 180.02562 * 19 18 2
22 22 H 1.09003 * 109.67559 * 59.67282 * 21 19 18
23 23 C 1.53132 * 109.57122 * 299.36262 * 21 19 18
24 24 N 1.46946 * 109.34529 * 240.25010 * 23 21 19
25 25 C 1.46903 * 111.06219 * 61.95927 * 24 23 21
26 26 C 1.53146 * 109.36701 * 298.00192 * 25 24 23
27 27 C 1.53383 * 108.82547 * 359.97438 * 26 25 24
28 28 C 1.53384 * 108.59920 * 301.03717 * 27 26 25
29 29 C 1.46948 * 110.97157 * 297.90951 * 24 23 21
30 30 H 1.08991 * 109.47388 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47166 * 300.00407 * 1 2 3
32 32 H 1.09002 * 109.46763 * 60.00034 * 1 2 3
33 33 H 1.09002 * 109.47042 * 305.00235 * 4 2 1
34 34 H 1.08996 * 109.46908 * 65.00149 * 4 2 1
35 35 H 1.00903 * 111.00116 * 303.95029 * 5 4 2
36 36 H 1.08994 * 109.47629 * 299.99962 * 6 5 4
37 37 H 1.08998 * 109.47281 * 60.00522 * 6 5 4
38 38 H 0.97000 * 120.00121 * 0.02562 * 9 7 6
39 39 H 0.96998 * 119.99649 * 180.02562 * 13 12 10
40 40 H 0.97006 * 119.99667 * 95.00424 * 18 2 1
41 41 H 1.08993 * 109.49099 * 0.20673 * 23 21 19
42 42 H 1.08998 * 109.49280 * 120.26318 * 23 21 19
43 43 H 1.08994 * 109.48879 * 178.03056 * 25 24 23
44 44 H 1.08998 * 109.48512 * 57.96548 * 25 24 23
45 45 H 1.09005 * 109.57488 * 119.79919 * 26 25 24
46 46 H 1.08996 * 109.57343 * 240.18833 * 26 25 24
47 47 H 1.09001 * 110.10958 * 179.60203 * 27 26 25
48 48 H 1.09001 * 109.58028 * 178.80813 * 28 27 26
49 49 H 1.09005 * 109.58132 * 299.19897 * 28 27 26
50 50 H 1.08996 * 109.49059 * 182.05747 * 29 24 23
51 51 H 1.09000 * 109.48841 * 302.12993 * 29 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2491
5 7 3.5040 -0.8268 -1.1902
6 6 4.0303 -1.5161 -2.3759
7 6 5.5317 -1.6047 -2.2804
8 8 6.1068 -1.1388 -1.3194
9 7 6.2355 -2.2005 -3.2633
10 6 7.6014 -2.2805 -3.1767
11 1 8.1134 -1.8665 -2.3206
12 6 8.3270 -2.8952 -4.1897
13 7 7.7039 -3.3995 -5.2312
14 14 10.1880 -3.0050 -4.0714
15 1 10.5625 -3.7635 -2.8509
16 1 10.7200 -3.7013 -5.2703
17 1 10.7608 -1.6368 -3.9992
18 7 2.0182 -0.6905 1.1963
19 6 2.1469 -0.0181 2.3572
20 8 1.8581 1.1586 2.4117
21 6 2.6496 -0.7282 3.5877
22 1 3.6468 -1.1265 3.3999
23 6 1.6981 -1.8741 3.9434
24 7 1.1505 -1.6522 5.2888
25 6 0.3703 -0.4087 5.3428
26 6 1.2846 0.7787 5.0271
27 6 2.7022 0.2554 4.7640
28 6 3.1853 -0.4966 6.0105
29 6 2.2190 -1.6493 6.2977
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.6054 -1.7199 -1.2950
34 1 1.7517 -0.1584 -2.1369
35 1 3.9280 0.0825 -1.0822
36 1 3.6095 -2.5201 -2.4292
37 1 3.7559 -0.9591 -3.2717
38 1 5.7757 -2.5720 -4.0324
39 1 8.2104 -3.8289 -5.9382
40 1 2.2489 -1.6317 1.1529
41 1 0.8834 -1.9080 3.2202
42 1 2.2423 -2.8183 3.9229
43 1 -0.0520 -0.2874 6.3403
44 1 -0.4349 -0.4526 4.6095
45 1 0.9164 1.2980 4.1423
46 1 1.2997 1.4634 5.8750
47 1 3.3702 1.0844 4.5297
48 1 4.1847 -0.8940 5.8329
49 1 3.2067 0.1835 6.8621
50 1 1.7834 -1.5197 7.2884
51 1 2.7589 -2.5953 6.2582
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001274753475.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:03:37
Heat of formation + Delta-G solvation = -70.792211 kcal
Electronic energy + Delta-G solvation = -30135.223134 eV
Core-core repulsion = 26068.795325 eV
Total energy + Delta-G solvation = -4066.427810 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.42420 -39.16609 -38.28901 -36.62035 -34.33609 -33.70224 -32.44596 -32.12412
-31.24033 -31.12381 -30.22866 -27.62307 -25.11066 -24.35019 -23.35212 -23.17304
-23.09178 -21.40862 -20.39749 -19.27073 -17.96113 -17.77524 -17.41201 -16.90124
-16.56161 -16.26315 -15.96556 -15.42547 -14.96376 -14.83923 -14.58363 -14.37922
-13.96558 -13.55171 -13.53374 -13.29462 -13.17149 -13.07637 -12.78625 -12.59979
-12.42450 -12.39617 -12.30672 -12.02598 -11.98228 -11.79221 -11.66852 -11.56050
-11.50122 -11.21691 -11.04213 -10.95563 -10.57400 -10.46502 -10.39151 -10.24060
-9.54637 -9.52662 -9.01978 -8.51413 -8.46536 -8.13537 -7.99120 -6.44452
-3.85426 2.67057 3.14922 3.18057 3.23962 3.28314 3.72305 3.87479
4.03083 4.25830 4.29259 4.43448 4.65288 4.74460 4.81331 4.91542
4.94284 4.97013 5.03994 5.05388 5.09216 5.17536 5.21024 5.24955
5.27109 5.41824 5.43278 5.52113 5.54831 5.56440 5.62583 5.72203
5.74722 5.77584 5.87083 5.88670 5.92239 5.97237 6.02103 6.03482
6.22223 6.22875 6.54645 6.79107 6.80925 7.11441 7.52355 7.55306
7.58324 8.03067 8.28465 8.58165 9.14988 9.51138 10.02537 10.73163
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.015100 B = 0.002277 C = 0.002073
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1853.824527 B =12292.249824 C =13505.774435
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.145 3.855
3 H 0.085 0.915
4 C 0.048 3.952
5 N -0.666 5.666
6 C 0.051 3.949
7 C 0.440 3.560
8 O -0.583 6.583
9 N -0.563 5.563
10 C -0.300 4.300
11 H 0.102 0.898
12 C 0.023 3.977
13 N -0.902 5.902
14 Si 0.931 3.069
15 H -0.273 1.273
16 H -0.284 1.284
17 H -0.274 1.274
18 N -0.706 5.706
19 C 0.525 3.475
20 O -0.545 6.545
21 C -0.142 4.142
22 H 0.103 0.897
23 C 0.062 3.938
24 N -0.528 5.528
25 C 0.052 3.948
26 C -0.160 4.160
27 C -0.065 4.065
28 C -0.151 4.151
29 C 0.051 3.949
30 H 0.058 0.942
31 H 0.061 0.939
32 H 0.064 0.936
33 H 0.077 0.923
34 H 0.042 0.958
35 H 0.351 0.649
36 H 0.086 0.914
37 H 0.043 0.957
38 H 0.392 0.608
39 H 0.272 0.728
40 H 0.405 0.595
41 H 0.079 0.921
42 H 0.086 0.914
43 H 0.073 0.927
44 H 0.071 0.929
45 H 0.095 0.905
46 H 0.059 0.941
47 H 0.083 0.917
48 H 0.068 0.932
49 H 0.068 0.932
50 H 0.075 0.925
51 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.114 2.953 16.069 23.661
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.040 3.960
3 H 0.103 0.897
4 C -0.082 4.082
5 N -0.299 5.299
6 C -0.082 4.082
7 C 0.225 3.775
8 O -0.467 6.467
9 N -0.200 5.200
10 C -0.430 4.430
11 H 0.120 0.880
12 C -0.179 4.179
13 N -0.543 5.543
14 Si 0.758 3.242
15 H -0.199 1.199
16 H -0.210 1.210
17 H -0.199 1.199
18 N -0.357 5.357
19 C 0.312 3.688
20 O -0.423 6.423
21 C -0.165 4.165
22 H 0.121 0.879
23 C -0.067 4.067
24 N -0.248 5.248
25 C -0.076 4.076
26 C -0.199 4.199
27 C -0.084 4.084
28 C -0.190 4.190
29 C -0.077 4.077
30 H 0.077 0.923
31 H 0.080 0.920
32 H 0.083 0.917
33 H 0.095 0.905
34 H 0.060 0.940
35 H 0.170 0.830
36 H 0.104 0.896
37 H 0.061 0.939
38 H 0.225 0.775
39 H 0.082 0.918
40 H 0.240 0.760
41 H 0.098 0.902
42 H 0.104 0.896
43 H 0.091 0.909
44 H 0.090 0.910
45 H 0.113 0.887
46 H 0.078 0.922
47 H 0.102 0.898
48 H 0.086 0.914
49 H 0.086 0.914
50 H 0.093 0.907
51 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -17.198 3.015 17.062 24.412
hybrid contribution 1.359 0.567 -1.573 2.155
sum -15.839 3.582 15.488 22.441
Atomic orbital electron populations
1.22130 0.95056 1.02188 1.02518 1.20923 0.93509 0.97449 0.84120
0.89709 1.22311 0.89533 1.00690 0.95700 1.60060 1.03034 1.26850
1.39962 1.21678 0.95317 0.99849 0.91369 1.19802 0.88004 0.84631
0.85049 1.90531 1.71111 1.51836 1.33254 1.41858 1.07397 1.50920
1.19799 1.19647 0.81510 1.35257 1.06555 0.88003 1.25265 1.00717
0.96719 0.95213 1.69606 1.36818 1.38480 1.09414 0.85916 0.82090
0.78609 0.77606 1.19861 1.20951 1.19913 1.45846 1.66585 1.14431
1.08801 1.20414 0.77049 0.87045 0.84338 1.90604 1.50737 1.16093
1.84883 1.22111 1.02299 0.98249 0.93818 0.87876 1.22236 0.97011
0.96665 0.90764 1.62528 1.23307 1.34666 1.04284 1.22210 0.95904
0.87533 1.01966 1.22483 0.95262 0.98669 1.03478 1.20882 0.97897
0.96945 0.92704 1.22298 1.00078 0.98670 0.98003 1.22222 0.91723
0.98142 0.95605 0.92316 0.91995 0.91685 0.90456 0.93961 0.83008
0.89583 0.93862 0.77467 0.91798 0.75981 0.90224 0.89590 0.90894
0.91007 0.88699 0.92172 0.89834 0.91351 0.91364 0.90673 0.90471
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16
2 C 0.15 1.56 2.81 -67.93 -0.19 1.37 16
3 H 0.08 1.09 7.58 -51.93 -0.39 0.69 16
4 C 0.05 0.52 5.24 -3.83 -0.02 0.50 16
5 N -0.67 -9.97 5.85 -115.06 -0.67 -10.64 16
6 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16
7 C 0.44 10.14 7.82 -10.98 -0.09 10.06 16
8 O -0.58 -15.59 15.78 5.54 0.09 -15.51 16
9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16
10 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16
11 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16
12 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16
13 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16
14 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16
15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16
16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
18 N -0.71 -7.72 4.57 -53.80 -0.25 -7.97 16
19 C 0.53 6.45 6.56 -10.99 -0.07 6.38 16
20 O -0.55 -8.26 13.38 5.55 0.07 -8.18 16
21 C -0.14 -1.46 2.60 -91.48 -0.24 -1.70 16
22 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16
23 C 0.06 0.55 5.62 -3.73 -0.02 0.53 16
24 N -0.53 -4.77 5.22 -234.29 -1.22 -5.99 16
25 C 0.05 0.47 6.10 -3.75 -0.02 0.45 16
26 C -0.16 -1.63 5.43 -26.46 -0.14 -1.77 16
27 C -0.06 -0.67 2.60 -90.00 -0.23 -0.90 16
28 C -0.15 -1.28 5.76 -26.47 -0.15 -1.43 16
29 C 0.05 0.41 6.09 -3.73 -0.02 0.39 16
30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.35 5.80 8.43 -39.29 -0.33 5.47 16
36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16
37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
38 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16
39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16
40 H 0.41 4.08 8.52 -40.82 -0.35 3.74 16
41 H 0.08 0.71 7.47 -51.93 -0.39 0.32 16
42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16
44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
45 H 0.09 1.18 5.56 -51.93 -0.29 0.89 16
46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
47 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16
48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
50 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
51 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
LS Contribution 400.77 15.07 6.04 6.04
Total: -1.00 -31.78 400.77 -10.19 -41.96
By element:
Atomic # 1 Polarization: 25.21 SS G_CDS: -8.77 Total: 16.44 kcal
Atomic # 6 Polarization: 6.78 SS G_CDS: -1.12 Total: 5.66 kcal
Atomic # 7 Polarization: -60.85 SS G_CDS: -1.48 Total: -62.33 kcal
Atomic # 8 Polarization: -23.85 SS G_CDS: 0.16 Total: -23.69 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -31.78 -10.19 -41.96 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001274753475.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.827 kcal
(2) G-P(sol) polarization free energy of solvation -31.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.792 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds