Wall clock time and date at job start Tue Mar 31 2020 21:03:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09006 * 109.47144 * 2 1
4 4 C 1.52996 * 109.47295 * 239.99539 * 2 1 3
5 5 N 1.46896 * 109.46915 * 185.00414 * 4 2 1
6 6 C 1.46902 * 110.99580 * 179.97438 * 5 4 2
7 7 C 1.50705 * 109.47114 * 179.97438 * 6 5 4
8 8 O 1.21300 * 120.00035 * 359.97438 * 7 6 5
9 9 N 1.34777 * 120.00131 * 180.02562 * 7 6 5
10 10 C 1.37097 * 119.99855 * 179.97438 * 9 7 6
11 11 H 1.07999 * 120.00311 * 0.02562 * 10 9 7
12 12 C 1.38948 * 120.00165 * 179.97438 * 10 9 7
13 13 N 1.31421 * 119.99634 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 120.00506 * 180.02562 * 12 10 9
15 15 H 1.48500 * 109.46850 * 59.99712 * 14 12 10
16 16 H 1.48496 * 109.47072 * 180.02562 * 14 12 10
17 17 H 1.48502 * 109.46602 * 300.00318 * 14 12 10
18 18 N 1.46504 * 109.46559 * 119.99208 * 2 1 3
19 19 C 1.34771 * 120.00415 * 274.99969 * 18 2 1
20 20 O 1.21284 * 119.99939 * 0.02562 * 19 18 2
21 21 C 1.50701 * 120.00435 * 180.02562 * 19 18 2
22 22 H 1.09003 * 109.67559 * 59.67282 * 21 19 18
23 23 C 1.53132 * 109.57122 * 299.36262 * 21 19 18
24 24 N 1.46946 * 109.34529 * 240.25010 * 23 21 19
25 25 C 1.46903 * 111.06219 * 61.95927 * 24 23 21
26 26 C 1.53146 * 109.36701 * 298.00192 * 25 24 23
27 27 C 1.53383 * 108.82547 * 359.97438 * 26 25 24
28 28 C 1.53384 * 108.59920 * 301.03717 * 27 26 25
29 29 C 1.46948 * 110.97157 * 297.90951 * 24 23 21
30 30 H 1.08991 * 109.47388 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47166 * 300.00407 * 1 2 3
32 32 H 1.09002 * 109.46763 * 60.00034 * 1 2 3
33 33 H 1.09002 * 109.47042 * 305.00235 * 4 2 1
34 34 H 1.08996 * 109.46908 * 65.00149 * 4 2 1
35 35 H 1.00903 * 111.00116 * 303.95029 * 5 4 2
36 36 H 1.08994 * 109.47629 * 299.99962 * 6 5 4
37 37 H 1.08998 * 109.47281 * 60.00522 * 6 5 4
38 38 H 0.97000 * 120.00121 * 0.02562 * 9 7 6
39 39 H 0.96998 * 119.99649 * 180.02562 * 13 12 10
40 40 H 0.97006 * 119.99667 * 95.00424 * 18 2 1
41 41 H 1.08993 * 109.49099 * 0.20673 * 23 21 19
42 42 H 1.08998 * 109.49280 * 120.26318 * 23 21 19
43 43 H 1.08994 * 109.48879 * 178.03056 * 25 24 23
44 44 H 1.08998 * 109.48512 * 57.96548 * 25 24 23
45 45 H 1.09005 * 109.57488 * 119.79919 * 26 25 24
46 46 H 1.08996 * 109.57343 * 240.18833 * 26 25 24
47 47 H 1.09001 * 110.10958 * 179.60203 * 27 26 25
48 48 H 1.09001 * 109.58028 * 178.80813 * 28 27 26
49 49 H 1.09005 * 109.58132 * 299.19897 * 28 27 26
50 50 H 1.08996 * 109.49059 * 182.05747 * 29 24 23
51 51 H 1.09000 * 109.48841 * 302.12993 * 29 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2491
5 7 3.5040 -0.8268 -1.1902
6 6 4.0303 -1.5161 -2.3759
7 6 5.5317 -1.6047 -2.2804
8 8 6.1068 -1.1388 -1.3194
9 7 6.2355 -2.2005 -3.2633
10 6 7.6014 -2.2805 -3.1767
11 1 8.1134 -1.8665 -2.3206
12 6 8.3270 -2.8952 -4.1897
13 7 7.7039 -3.3995 -5.2312
14 14 10.1880 -3.0050 -4.0714
15 1 10.5625 -3.7635 -2.8509
16 1 10.7200 -3.7013 -5.2703
17 1 10.7608 -1.6368 -3.9992
18 7 2.0182 -0.6905 1.1963
19 6 2.1469 -0.0181 2.3572
20 8 1.8581 1.1586 2.4117
21 6 2.6496 -0.7282 3.5877
22 1 3.6468 -1.1265 3.3999
23 6 1.6981 -1.8741 3.9434
24 7 1.1505 -1.6522 5.2888
25 6 0.3703 -0.4087 5.3428
26 6 1.2846 0.7787 5.0271
27 6 2.7022 0.2554 4.7640
28 6 3.1853 -0.4966 6.0105
29 6 2.2190 -1.6493 6.2977
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.6054 -1.7199 -1.2950
34 1 1.7517 -0.1584 -2.1369
35 1 3.9280 0.0825 -1.0822
36 1 3.6095 -2.5201 -2.4292
37 1 3.7559 -0.9591 -3.2717
38 1 5.7757 -2.5720 -4.0324
39 1 8.2104 -3.8289 -5.9382
40 1 2.2489 -1.6317 1.1529
41 1 0.8834 -1.9080 3.2202
42 1 2.2423 -2.8183 3.9229
43 1 -0.0520 -0.2874 6.3403
44 1 -0.4349 -0.4526 4.6095
45 1 0.9164 1.2980 4.1423
46 1 1.2997 1.4634 5.8750
47 1 3.3702 1.0844 4.5297
48 1 4.1847 -0.8940 5.8329
49 1 3.2067 0.1835 6.8621
50 1 1.7834 -1.5197 7.2884
51 1 2.7589 -2.5953 6.2582
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001274753475.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:03:36
Heat of formation + Delta-G solvation = -96.041930 kcal
Electronic energy + Delta-G solvation = -30136.318044 eV
Core-core repulsion = 26068.795325 eV
Total energy + Delta-G solvation = -4067.522720 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-42.24152 -40.25995 -39.90079 -37.72963 -36.03457 -35.14323 -33.32225 -33.22417
-32.92508 -31.83884 -31.08668 -28.95987 -26.71672 -25.27478 -24.50558 -24.02623
-23.81351 -22.29379 -21.35183 -21.03351 -19.90929 -18.68443 -18.23685 -17.98724
-17.52507 -17.32112 -17.06000 -16.67080 -16.36527 -16.08644 -15.97288 -15.68082
-15.19972 -15.06304 -14.71129 -14.27230 -14.06987 -13.94685 -13.84544 -13.61240
-13.48290 -13.14012 -13.12639 -13.10281 -13.04525 -13.01831 -12.81142 -12.78336
-12.66212 -12.49414 -12.43735 -12.13431 -11.97659 -11.84066 -11.50671 -11.35237
-11.11519 -10.50226 -10.34744 -10.01831 -9.95100 -9.35747 -9.21050 -8.47208
-5.95784 1.38992 1.41123 1.51740 1.70495 2.05833 2.25876 2.29067
2.89666 3.02351 3.20304 3.48883 3.52203 3.66371 3.82327 3.86236
4.04133 4.12191 4.17902 4.23194 4.28273 4.32545 4.34471 4.38898
4.41848 4.49195 4.52446 4.59333 4.64349 4.65580 4.76064 4.78766
4.83720 4.95727 5.00436 5.06362 5.09616 5.14243 5.19385 5.20782
5.27324 5.40130 5.40980 5.64645 5.86684 6.07804 6.08531 6.12279
6.30009 6.59989 6.66108 7.12460 7.34993 7.56529 8.12118 8.69868
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.015100 B = 0.002277 C = 0.002073
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1853.824527 B =12292.249824 C =13505.774435
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.147 3.853
3 H 0.059 0.941
4 C 0.054 3.946
5 N -0.677 5.677
6 C 0.066 3.934
7 C 0.437 3.563
8 O -0.625 6.625
9 N -0.573 5.573
10 C -0.334 4.334
11 H 0.077 0.923
12 C -0.012 4.012
13 N -0.920 5.920
14 Si 0.991 3.009
15 H -0.272 1.272
16 H -0.270 1.270
17 H -0.273 1.273
18 N -0.700 5.700
19 C 0.520 3.480
20 O -0.579 6.579
21 C -0.138 4.138
22 H 0.100 0.900
23 C 0.067 3.933
24 N -0.530 5.530
25 C 0.056 3.944
26 C -0.155 4.155
27 C -0.069 4.069
28 C -0.145 4.145
29 C 0.052 3.948
30 H 0.074 0.926
31 H 0.045 0.955
32 H 0.079 0.921
33 H 0.098 0.902
34 H 0.059 0.941
35 H 0.338 0.662
36 H 0.111 0.889
37 H 0.066 0.934
38 H 0.397 0.603
39 H 0.278 0.722
40 H 0.411 0.589
41 H 0.080 0.920
42 H 0.099 0.901
43 H 0.087 0.913
44 H 0.067 0.933
45 H 0.069 0.931
46 H 0.064 0.936
47 H 0.058 0.942
48 H 0.069 0.931
49 H 0.075 0.925
50 H 0.087 0.913
51 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.123 1.507 16.127 24.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.041 3.959
3 H 0.077 0.923
4 C -0.075 4.075
5 N -0.309 5.309
6 C -0.066 4.066
7 C 0.224 3.776
8 O -0.511 6.511
9 N -0.211 5.211
10 C -0.464 4.464
11 H 0.095 0.905
12 C -0.212 4.212
13 N -0.560 5.560
14 Si 0.814 3.186
15 H -0.197 1.197
16 H -0.194 1.194
17 H -0.199 1.199
18 N -0.350 5.350
19 C 0.307 3.693
20 O -0.460 6.460
21 C -0.161 4.161
22 H 0.118 0.882
23 C -0.062 4.062
24 N -0.250 5.250
25 C -0.072 4.072
26 C -0.194 4.194
27 C -0.089 4.089
28 C -0.185 4.185
29 C -0.076 4.076
30 H 0.093 0.907
31 H 0.064 0.936
32 H 0.097 0.903
33 H 0.116 0.884
34 H 0.077 0.923
35 H 0.156 0.844
36 H 0.129 0.871
37 H 0.084 0.916
38 H 0.231 0.769
39 H 0.087 0.913
40 H 0.247 0.753
41 H 0.098 0.902
42 H 0.118 0.882
43 H 0.105 0.895
44 H 0.086 0.914
45 H 0.087 0.913
46 H 0.083 0.917
47 H 0.077 0.923
48 H 0.088 0.912
49 H 0.093 0.907
50 H 0.105 0.895
51 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -18.241 1.537 17.096 25.048
hybrid contribution 1.635 1.074 -1.582 2.515
sum -16.606 2.611 15.515 22.876
Atomic orbital electron populations
1.22035 0.93217 1.03194 1.02435 1.20922 0.94798 0.96095 0.84055
0.92255 1.22375 0.86810 1.02135 0.96147 1.60067 1.05354 1.26131
1.39355 1.21544 0.90269 1.01852 0.92954 1.20949 0.90695 0.82414
0.83516 1.90503 1.72865 1.53040 1.34708 1.41927 1.06797 1.51738
1.20593 1.19600 0.83151 1.36959 1.06655 0.90494 1.26012 1.04794
0.95829 0.94567 1.69662 1.38306 1.38397 1.09672 0.85022 0.76968
0.78561 0.78005 1.19674 1.19436 1.19872 1.45851 1.65990 1.14617
1.08575 1.20797 0.76605 0.86730 0.85174 1.90594 1.52314 1.17599
1.85459 1.22116 1.02445 0.98610 0.92920 0.88157 1.22251 0.96702
0.96354 0.90881 1.62562 1.23674 1.34343 1.04434 1.22190 0.95469
0.86929 1.02609 1.22390 0.95343 0.99206 1.02434 1.20871 0.97626
0.96543 0.93829 1.22264 1.00274 0.98852 0.97061 1.22301 0.91337
0.98162 0.95820 0.90682 0.93612 0.90251 0.88365 0.92315 0.84391
0.87117 0.91640 0.76921 0.91285 0.75279 0.90158 0.88225 0.89492
0.91403 0.91282 0.91695 0.92342 0.91237 0.90671 0.89460 0.89530
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.44 9.48 71.98 0.68 -1.76 16
2 C 0.15 3.02 2.81 44.99 0.13 3.15 16
3 H 0.06 1.55 7.58 -2.38 -0.02 1.53 16
4 C 0.05 1.06 5.24 86.30 0.45 1.51 16
5 N -0.68 -19.39 5.85 -517.95 -3.03 -22.42 16
6 C 0.07 2.08 6.17 85.56 0.53 2.61 16
7 C 0.44 20.16 7.82 87.66 0.69 20.84 16
8 O -0.62 -34.12 15.78 -3.09 -0.05 -34.16 16
9 N -0.57 -28.83 5.29 -306.97 -1.62 -30.45 16
10 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16
11 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16
12 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16
13 N -0.92 -49.06 13.05 21.66 0.28 -48.77 16
14 Si 0.99 42.66 29.55 68.60 2.03 44.68 16
15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
16 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16
17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
18 N -0.70 -15.02 4.57 -442.53 -2.02 -17.04 16
19 C 0.52 13.08 6.56 87.66 0.57 13.65 16
20 O -0.58 -18.47 13.38 -3.04 -0.04 -18.51 16
21 C -0.14 -2.85 2.60 -11.35 -0.03 -2.88 16
22 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16
23 C 0.07 1.11 5.62 86.34 0.49 1.59 16
24 N -0.53 -8.70 5.22 -895.16 -4.67 -13.37 16
25 C 0.06 0.96 6.10 86.35 0.53 1.49 16
26 C -0.15 -3.19 5.43 30.77 0.17 -3.02 16
27 C -0.07 -1.46 2.60 -10.39 -0.03 -1.48 16
28 C -0.15 -2.32 5.76 30.77 0.18 -2.14 16
29 C 0.05 0.72 6.09 86.34 0.53 1.25 16
30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16
32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16
34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
35 H 0.34 11.18 8.43 -89.69 -0.76 10.42 16
36 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16
37 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16
38 H 0.40 18.84 7.90 -92.71 -0.73 18.10 16
39 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16
40 H 0.41 7.81 8.52 -92.70 -0.79 7.02 16
41 H 0.08 1.32 7.47 -2.39 -0.02 1.30 16
42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16
43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16
44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
45 H 0.07 1.81 5.56 -2.38 -0.01 1.80 16
46 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
47 H 0.06 1.50 8.11 -2.39 -0.02 1.48 16
48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
49 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16
50 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
51 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16
Total: -1.00 -70.24 400.77 -4.30 -74.54
By element:
Atomic # 1 Polarization: 50.20 SS G_CDS: -1.33 Total: 48.87 kcal
Atomic # 6 Polarization: 10.47 SS G_CDS: 6.16 Total: 16.63 kcal
Atomic # 7 Polarization: -120.99 SS G_CDS: -11.06 Total: -132.05 kcal
Atomic # 8 Polarization: -52.58 SS G_CDS: -0.09 Total: -52.67 kcal
Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal
Total: -70.24 -4.30 -74.54 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001274753475.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.503 kcal
(2) G-P(sol) polarization free energy of solvation -70.241 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.744 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.298 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.539 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.042 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds