Wall clock time and date at job start Tue Mar 31 2020 21:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46749 * 2 1 4 4 C 1.52999 * 109.47290 * 239.99859 * 2 1 3 5 5 N 1.46896 * 109.46876 * 185.00143 * 4 2 1 6 6 C 1.46903 * 111.00067 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47209 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00373 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99831 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00219 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99622 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00206 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00096 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99984 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46996 * 90.00337 * 14 12 10 16 16 H 1.48500 * 109.47229 * 210.00595 * 14 12 10 17 17 H 1.48505 * 109.46771 * 330.00435 * 14 12 10 18 18 N 1.46500 * 109.46842 * 119.99808 * 2 1 3 19 19 C 1.34776 * 120.00087 * 275.00311 * 18 2 1 20 20 O 1.21283 * 119.99982 * 359.97438 * 19 18 2 21 21 C 1.50705 * 119.99838 * 180.02562 * 19 18 2 22 22 H 1.08994 * 109.67611 * 300.31819 * 21 19 18 23 23 C 1.53207 * 109.58643 * 60.64070 * 21 19 18 24 24 N 1.46947 * 109.34252 * 119.73028 * 23 21 19 25 25 C 1.46910 * 111.05441 * 298.06313 * 24 23 21 26 26 C 1.53140 * 109.38794 * 62.00824 * 25 24 23 27 27 C 1.53385 * 108.82442 * 359.97438 * 26 25 24 28 28 C 1.53394 * 108.59946 * 58.96532 * 27 26 25 29 29 C 1.46939 * 110.94982 * 62.09485 * 24 23 21 30 30 H 1.09006 * 109.47120 * 60.00518 * 1 2 3 31 31 H 1.09004 * 109.47067 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47553 * 300.00179 * 1 2 3 33 33 H 1.09001 * 109.47209 * 305.00068 * 4 2 1 34 34 H 1.08996 * 109.46719 * 65.00207 * 4 2 1 35 35 H 1.00903 * 111.00185 * 303.95469 * 5 4 2 36 36 H 1.09003 * 109.47137 * 300.00261 * 6 5 4 37 37 H 1.09008 * 109.46860 * 59.99976 * 6 5 4 38 38 H 0.97005 * 120.00280 * 0.02562 * 9 7 6 39 39 H 0.97001 * 120.00158 * 179.97438 * 13 12 10 40 40 H 0.97006 * 119.99770 * 95.00224 * 18 2 1 41 41 H 1.09000 * 109.47989 * 359.78064 * 23 21 19 42 42 H 1.09000 * 109.51701 * 239.69905 * 23 21 19 43 43 H 1.09002 * 109.48962 * 302.02747 * 25 24 23 44 44 H 1.09002 * 109.48444 * 181.98805 * 25 24 23 45 45 H 1.08999 * 109.57598 * 119.78785 * 26 25 24 46 46 H 1.09000 * 109.57879 * 240.05452 * 26 25 24 47 47 H 1.09005 * 110.11366 * 179.60179 * 27 26 25 48 48 H 1.08999 * 109.57617 * 60.80599 * 28 27 26 49 49 H 1.09000 * 109.57480 * 181.06253 * 28 27 26 50 50 H 1.09000 * 109.47100 * 177.92665 * 29 24 23 51 51 H 1.09000 * 109.51117 * 57.87992 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.0304 -1.5159 -2.3760 7 6 5.5317 -1.6043 -2.2804 8 8 6.1067 -1.1394 -1.3190 9 7 6.2356 -2.2001 -3.2634 10 6 7.6014 -2.2811 -3.1763 11 1 8.1133 -1.8678 -2.3198 12 6 8.3270 -2.8957 -4.1895 13 7 7.7041 -3.3990 -5.2314 14 14 10.1879 -3.0066 -4.0704 15 1 10.5654 -4.2642 -3.3766 16 1 10.7725 -2.9996 -5.4355 17 1 10.7050 -1.8442 -3.3045 18 7 2.0183 -0.6906 1.1962 19 6 2.1469 -0.0182 2.3572 20 8 1.8589 1.1586 2.4115 21 6 2.6498 -0.7285 3.5875 22 1 1.9829 -1.5552 3.8323 23 6 4.0608 -1.2665 3.3294 24 7 4.9952 -0.6627 4.2895 25 6 5.0505 0.7962 4.1259 26 6 3.6681 1.3921 4.4074 27 6 2.7021 0.2550 4.7631 28 6 3.2460 -0.4822 5.9934 29 6 4.6398 -1.0263 5.6681 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6055 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1369 35 1 3.9280 0.0826 -1.0822 36 1 3.6096 -2.5200 -2.4293 37 1 3.7559 -0.9588 -3.2718 38 1 5.7758 -2.5716 -4.0325 39 1 8.2106 -3.8278 -5.9388 40 1 2.2490 -1.6318 1.1526 41 1 4.3669 -1.0118 2.3147 42 1 4.0653 -2.3498 3.4498 43 1 5.3492 1.0367 3.1056 44 1 5.7755 1.2132 4.8249 45 1 3.7344 2.0899 5.2422 46 1 3.3086 1.9155 3.5214 47 1 1.7114 0.6573 4.9748 48 1 3.3110 0.2088 6.8340 49 1 2.5803 -1.3066 6.2490 50 1 5.3680 -0.5971 6.3563 51 1 4.6391 -2.1115 5.7697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274753476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:42 Heat of formation + Delta-G solvation = -69.916958 kcal Electronic energy + Delta-G solvation = -30552.331377 eV Core-core repulsion = 26485.941521 eV Total energy + Delta-G solvation = -4066.389856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32574 -39.12544 -38.26345 -36.60600 -34.31437 -33.67584 -32.36128 -32.04654 -31.21232 -30.99028 -30.15911 -27.61007 -25.09732 -24.27313 -23.24198 -23.10691 -22.95895 -21.37092 -20.39880 -19.24450 -17.93002 -17.71447 -17.29199 -16.80041 -16.51736 -16.17932 -15.95204 -15.35772 -14.93676 -14.77081 -14.55957 -14.32350 -13.93856 -13.60637 -13.49603 -13.26143 -13.12452 -12.91286 -12.60316 -12.52947 -12.36180 -12.24599 -12.19270 -12.05851 -11.94206 -11.74533 -11.59221 -11.53148 -11.47810 -11.10208 -11.03766 -10.94438 -10.43285 -10.39095 -10.30874 -10.21761 -9.53119 -9.50761 -8.99681 -8.48913 -8.26143 -8.11789 -7.96352 -6.42009 -3.82709 2.67025 3.16604 3.18297 3.26998 3.33094 3.90241 3.92119 4.04752 4.27922 4.36220 4.50397 4.69486 4.75932 4.91708 4.98654 5.03521 5.06951 5.08493 5.10262 5.20447 5.22506 5.26653 5.29077 5.35370 5.43489 5.47786 5.54424 5.57061 5.68607 5.75640 5.76298 5.84342 5.88785 5.91588 5.94211 6.02102 6.04020 6.08542 6.12758 6.24444 6.31048 6.56350 7.01116 7.04249 7.12486 7.55306 7.56202 7.58927 8.06130 8.29048 8.60844 9.17932 9.53973 10.05298 10.75757 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.002811 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.911254 B = 9957.478532 C =11854.255973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.085 0.915 4 C 0.048 3.952 5 N -0.665 5.665 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.580 6.580 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 N -0.707 5.707 19 C 0.524 3.476 20 O -0.545 6.545 21 C -0.139 4.139 22 H 0.095 0.905 23 C 0.060 3.940 24 N -0.524 5.524 25 C 0.051 3.949 26 C -0.159 4.159 27 C -0.064 4.064 28 C -0.151 4.151 29 C 0.051 3.949 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.350 0.650 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.405 0.595 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.074 0.926 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 3.541 15.457 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.103 0.897 4 C -0.082 4.082 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.464 6.464 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 N -0.357 5.357 19 C 0.310 3.690 20 O -0.423 6.423 21 C -0.162 4.162 22 H 0.113 0.887 23 C -0.069 4.069 24 N -0.243 5.243 25 C -0.077 4.077 26 C -0.198 4.198 27 C -0.083 4.083 28 C -0.190 4.190 29 C -0.078 4.078 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.170 0.830 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.240 0.760 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.258 3.836 16.232 21.942 hybrid contribution -0.297 0.107 -1.135 1.178 sum -14.555 3.943 15.096 21.338 Atomic orbital electron populations 1.22131 0.95128 1.02145 1.02509 1.20917 0.93472 0.97456 0.84144 0.89698 1.22310 0.89602 1.00656 0.95670 1.60057 1.02953 1.26825 1.39959 1.21682 0.95396 0.99811 0.91341 1.19787 0.87963 0.84637 0.85060 1.90538 1.71057 1.51712 1.33110 1.41866 1.07410 1.50998 1.19812 1.19705 0.81505 1.35094 1.06492 0.87905 1.25255 1.00684 0.96771 0.95218 1.69610 1.36712 1.38676 1.09424 0.85866 0.82186 0.78928 0.77379 1.20362 1.20969 1.19381 1.45856 1.66590 1.14391 1.08884 1.20464 0.76853 0.87155 0.84492 1.90605 1.50470 1.16021 1.85212 1.22107 1.00507 0.99556 0.94008 0.88714 1.22321 0.87046 0.99400 0.98139 1.62458 1.47954 1.10160 1.03777 1.22235 0.96103 0.86725 1.02668 1.22480 0.95930 0.97861 1.03543 1.20855 0.99877 0.94818 0.92772 1.22313 0.98466 1.00380 0.97817 1.22228 0.94718 1.00767 0.90072 0.91694 0.92371 0.92003 0.90496 0.93989 0.83017 0.89625 0.93915 0.77520 0.91892 0.75988 0.88763 0.89845 0.90375 0.90923 0.92301 0.88729 0.90248 0.91496 0.91755 0.90712 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16 2 C 0.15 1.55 2.81 -67.93 -0.19 1.36 16 3 H 0.08 1.08 7.58 -51.93 -0.39 0.68 16 4 C 0.05 0.52 5.24 -3.83 -0.02 0.49 16 5 N -0.67 -9.76 5.85 -115.06 -0.67 -10.44 16 6 C 0.05 0.83 6.17 -4.98 -0.03 0.80 16 7 C 0.44 10.09 7.82 -10.99 -0.09 10.00 16 8 O -0.58 -15.39 15.78 5.55 0.09 -15.30 16 9 N -0.56 -14.06 5.29 -10.97 -0.06 -14.12 16 10 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 14 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 N -0.71 -7.67 4.57 -53.80 -0.25 -7.91 16 19 C 0.52 6.41 6.56 -10.98 -0.07 6.34 16 20 O -0.55 -8.24 13.39 5.56 0.07 -8.17 16 21 C -0.14 -1.43 2.60 -91.47 -0.24 -1.67 16 22 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 23 C 0.06 0.69 5.63 -3.69 -0.02 0.67 16 24 N -0.52 -6.27 5.22 -234.24 -1.22 -7.49 16 25 C 0.05 0.62 6.09 -3.75 -0.02 0.59 16 26 C -0.16 -1.85 5.42 -26.46 -0.14 -2.00 16 27 C -0.06 -0.66 2.59 -90.03 -0.23 -0.90 16 28 C -0.15 -1.30 5.75 -26.46 -0.15 -1.45 16 29 C 0.05 0.48 6.09 -3.74 -0.02 0.46 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.35 5.70 8.43 -39.29 -0.33 5.37 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 38 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.41 4.04 8.53 -40.82 -0.35 3.70 16 41 H 0.09 1.32 7.47 -51.93 -0.39 0.93 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.33 5.57 -51.93 -0.29 1.04 16 47 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -31.69 400.80 -10.19 -41.88 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -8.77 Total: 17.52 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.12 Total: 5.70 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -1.48 Total: -63.67 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.16 Total: -23.47 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.69 -10.19 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274753476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.041 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds