Wall clock time and date at job start Tue Mar 31 2020 21:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46749 * 2 1 4 4 C 1.52999 * 109.47290 * 239.99859 * 2 1 3 5 5 N 1.46896 * 109.46876 * 185.00143 * 4 2 1 6 6 C 1.46903 * 111.00067 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47209 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00373 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99831 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00219 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99622 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00206 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00096 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99984 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46996 * 90.00337 * 14 12 10 16 16 H 1.48500 * 109.47229 * 210.00595 * 14 12 10 17 17 H 1.48505 * 109.46771 * 330.00435 * 14 12 10 18 18 N 1.46500 * 109.46842 * 119.99808 * 2 1 3 19 19 C 1.34776 * 120.00087 * 275.00311 * 18 2 1 20 20 O 1.21283 * 119.99982 * 359.97438 * 19 18 2 21 21 C 1.50705 * 119.99838 * 180.02562 * 19 18 2 22 22 H 1.08994 * 109.67611 * 300.31819 * 21 19 18 23 23 C 1.53207 * 109.58643 * 60.64070 * 21 19 18 24 24 N 1.46947 * 109.34252 * 119.73028 * 23 21 19 25 25 C 1.46910 * 111.05441 * 298.06313 * 24 23 21 26 26 C 1.53140 * 109.38794 * 62.00824 * 25 24 23 27 27 C 1.53385 * 108.82442 * 359.97438 * 26 25 24 28 28 C 1.53394 * 108.59946 * 58.96532 * 27 26 25 29 29 C 1.46939 * 110.94982 * 62.09485 * 24 23 21 30 30 H 1.09006 * 109.47120 * 60.00518 * 1 2 3 31 31 H 1.09004 * 109.47067 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47553 * 300.00179 * 1 2 3 33 33 H 1.09001 * 109.47209 * 305.00068 * 4 2 1 34 34 H 1.08996 * 109.46719 * 65.00207 * 4 2 1 35 35 H 1.00903 * 111.00185 * 303.95469 * 5 4 2 36 36 H 1.09003 * 109.47137 * 300.00261 * 6 5 4 37 37 H 1.09008 * 109.46860 * 59.99976 * 6 5 4 38 38 H 0.97005 * 120.00280 * 0.02562 * 9 7 6 39 39 H 0.97001 * 120.00158 * 179.97438 * 13 12 10 40 40 H 0.97006 * 119.99770 * 95.00224 * 18 2 1 41 41 H 1.09000 * 109.47989 * 359.78064 * 23 21 19 42 42 H 1.09000 * 109.51701 * 239.69905 * 23 21 19 43 43 H 1.09002 * 109.48962 * 302.02747 * 25 24 23 44 44 H 1.09002 * 109.48444 * 181.98805 * 25 24 23 45 45 H 1.08999 * 109.57598 * 119.78785 * 26 25 24 46 46 H 1.09000 * 109.57879 * 240.05452 * 26 25 24 47 47 H 1.09005 * 110.11366 * 179.60179 * 27 26 25 48 48 H 1.08999 * 109.57617 * 60.80599 * 28 27 26 49 49 H 1.09000 * 109.57480 * 181.06253 * 28 27 26 50 50 H 1.09000 * 109.47100 * 177.92665 * 29 24 23 51 51 H 1.09000 * 109.51117 * 57.87992 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.0304 -1.5159 -2.3760 7 6 5.5317 -1.6043 -2.2804 8 8 6.1067 -1.1394 -1.3190 9 7 6.2356 -2.2001 -3.2634 10 6 7.6014 -2.2811 -3.1763 11 1 8.1133 -1.8678 -2.3198 12 6 8.3270 -2.8957 -4.1895 13 7 7.7041 -3.3990 -5.2314 14 14 10.1879 -3.0066 -4.0704 15 1 10.5654 -4.2642 -3.3766 16 1 10.7725 -2.9996 -5.4355 17 1 10.7050 -1.8442 -3.3045 18 7 2.0183 -0.6906 1.1962 19 6 2.1469 -0.0182 2.3572 20 8 1.8589 1.1586 2.4115 21 6 2.6498 -0.7285 3.5875 22 1 1.9829 -1.5552 3.8323 23 6 4.0608 -1.2665 3.3294 24 7 4.9952 -0.6627 4.2895 25 6 5.0505 0.7962 4.1259 26 6 3.6681 1.3921 4.4074 27 6 2.7021 0.2550 4.7631 28 6 3.2460 -0.4822 5.9934 29 6 4.6398 -1.0263 5.6681 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6055 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1369 35 1 3.9280 0.0826 -1.0822 36 1 3.6096 -2.5200 -2.4293 37 1 3.7559 -0.9588 -3.2718 38 1 5.7758 -2.5716 -4.0325 39 1 8.2106 -3.8278 -5.9388 40 1 2.2490 -1.6318 1.1526 41 1 4.3669 -1.0118 2.3147 42 1 4.0653 -2.3498 3.4498 43 1 5.3492 1.0367 3.1056 44 1 5.7755 1.2132 4.8249 45 1 3.7344 2.0899 5.2422 46 1 3.3086 1.9155 3.5214 47 1 1.7114 0.6573 4.9748 48 1 3.3110 0.2088 6.8340 49 1 2.5803 -1.3066 6.2490 50 1 5.3680 -0.5971 6.3563 51 1 4.6391 -2.1115 5.7697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274753476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:41 Heat of formation + Delta-G solvation = -95.300652 kcal Electronic energy + Delta-G solvation = -30553.432097 eV Core-core repulsion = 26485.941521 eV Total energy + Delta-G solvation = -4067.490575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.22235 -40.24288 -39.88932 -37.71837 -36.01525 -35.12332 -33.31130 -33.21161 -32.92080 -31.83614 -31.06365 -28.94604 -26.70812 -25.28773 -24.47419 -24.02055 -23.81167 -22.27357 -21.35579 -21.01191 -19.89122 -18.68082 -18.19716 -17.94299 -17.46839 -17.38206 -17.06072 -16.67278 -16.35779 -16.05362 -15.94328 -15.64678 -15.17086 -15.05874 -14.68862 -14.38372 -14.04863 -13.93372 -13.82577 -13.53464 -13.39013 -13.16448 -13.10816 -13.09871 -13.04266 -12.99729 -12.93009 -12.77839 -12.59504 -12.46586 -12.40504 -12.12435 -11.97254 -11.83092 -11.49212 -11.34617 -11.09742 -10.50344 -10.32976 -9.99651 -9.92623 -9.34057 -9.15439 -8.45899 -5.94046 1.38319 1.42134 1.54535 1.71001 2.08129 2.27965 2.30686 2.90974 3.04593 3.21918 3.50758 3.53783 3.68233 3.81815 3.86729 4.07632 4.09934 4.18323 4.23372 4.29489 4.33406 4.35415 4.37211 4.43665 4.49915 4.53637 4.60315 4.65249 4.66071 4.76482 4.79067 4.84833 4.98792 5.00643 5.06709 5.10110 5.14656 5.21420 5.23400 5.26997 5.39969 5.42080 5.65342 5.88212 6.09337 6.10224 6.19705 6.30964 6.61891 6.67413 7.14592 7.36379 7.58662 8.14517 8.71531 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.002811 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.911254 B = 9957.478532 C =11854.255973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.147 3.853 3 H 0.059 0.941 4 C 0.054 3.946 5 N -0.675 5.675 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.621 6.621 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.990 3.010 15 H -0.270 1.270 16 H -0.271 1.271 17 H -0.274 1.274 18 N -0.701 5.701 19 C 0.518 3.482 20 O -0.579 6.579 21 C -0.131 4.131 22 H 0.122 0.878 23 C 0.065 3.935 24 N -0.542 5.542 25 C 0.054 3.946 26 C -0.154 4.154 27 C -0.064 4.064 28 C -0.141 4.141 29 C 0.049 3.951 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.338 0.662 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.411 0.589 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.306 2.050 15.971 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 H 0.077 0.923 4 C -0.075 4.075 5 N -0.307 5.307 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.212 5.212 10 C -0.461 4.461 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.813 3.187 15 H -0.196 1.196 16 H -0.196 1.196 17 H -0.199 1.199 18 N -0.351 5.351 19 C 0.306 3.694 20 O -0.459 6.459 21 C -0.153 4.153 22 H 0.140 0.860 23 C -0.064 4.064 24 N -0.262 5.262 25 C -0.074 4.074 26 C -0.193 4.193 27 C -0.084 4.084 28 C -0.180 4.180 29 C -0.078 4.078 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.247 0.753 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.099 0.901 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.553 2.311 16.722 22.954 hybrid contribution 0.079 0.615 -1.295 1.436 sum -15.474 2.926 15.427 22.045 Atomic orbital electron populations 1.22037 0.93267 1.03172 1.02424 1.20911 0.94759 0.96086 0.84110 0.92298 1.22373 0.86888 1.02087 0.96123 1.60060 1.05255 1.26081 1.39295 1.21542 0.90336 1.01806 0.92937 1.20934 0.90660 0.82389 0.83511 1.90515 1.72815 1.52876 1.34555 1.41930 1.06778 1.51862 1.20618 1.19633 0.83172 1.36794 1.06551 0.90532 1.25986 1.04710 0.95890 0.94573 1.69663 1.38203 1.38614 1.09694 0.84977 0.77112 0.78749 0.77823 1.19574 1.19556 1.19936 1.45858 1.65968 1.14578 1.08684 1.20857 0.76385 0.86837 0.85367 1.90596 1.52071 1.17480 1.85800 1.22094 1.00091 1.00081 0.93081 0.86022 1.22217 0.87530 1.00225 0.96436 1.62449 1.48689 1.09657 1.05405 1.22131 0.96660 0.87511 1.01125 1.22378 0.95900 0.98483 1.02579 1.20866 0.99277 0.94487 0.93728 1.22255 0.97996 1.00887 0.96862 1.22328 0.95436 1.01638 0.88435 0.90287 0.90698 0.93596 0.88404 0.92397 0.84445 0.87172 0.91728 0.76979 0.91335 0.75296 0.92107 0.88234 0.93396 0.89914 0.91321 0.91633 0.90638 0.90589 0.89866 0.90131 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.48 71.98 0.68 -1.76 16 2 C 0.15 3.03 2.81 44.99 0.13 3.15 16 3 H 0.06 1.54 7.58 -2.39 -0.02 1.53 16 4 C 0.05 1.06 5.24 86.30 0.45 1.51 16 5 N -0.68 -19.32 5.85 -517.94 -3.03 -22.35 16 6 C 0.07 2.09 6.17 85.55 0.53 2.62 16 7 C 0.44 20.27 7.82 87.65 0.69 20.95 16 8 O -0.62 -34.07 15.78 -3.05 -0.05 -34.11 16 9 N -0.57 -29.03 5.29 -306.99 -1.62 -30.65 16 10 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 11 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 13 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 14 Si 0.99 43.06 29.55 68.60 2.03 45.08 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 N -0.70 -14.95 4.57 -442.53 -2.02 -16.97 16 19 C 0.52 12.85 6.56 87.66 0.58 13.42 16 20 O -0.58 -18.26 13.39 -3.04 -0.04 -18.30 16 21 C -0.13 -2.60 2.60 -11.35 -0.03 -2.62 16 22 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 23 C 0.07 1.48 5.63 86.36 0.49 1.97 16 24 N -0.54 -12.85 5.22 -895.00 -4.67 -17.52 16 25 C 0.05 1.37 6.09 86.35 0.53 1.89 16 26 C -0.15 -3.69 5.42 30.77 0.17 -3.53 16 27 C -0.06 -1.28 2.59 -10.41 -0.03 -1.31 16 28 C -0.14 -2.09 5.75 30.77 0.18 -1.91 16 29 C 0.05 0.84 6.09 86.34 0.53 1.37 16 30 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.34 11.21 8.43 -89.69 -0.76 10.46 16 36 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.40 18.92 7.90 -92.70 -0.73 18.19 16 39 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.41 7.77 8.53 -92.70 -0.79 6.98 16 41 H 0.06 1.79 7.47 -2.39 -0.02 1.77 16 42 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.07 1.98 5.57 -2.39 -0.01 1.96 16 47 H 0.08 1.59 8.13 -2.38 -0.02 1.57 16 48 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -71.26 400.80 -4.30 -75.55 By element: Atomic # 1 Polarization: 52.15 SS G_CDS: -1.33 Total: 50.82 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 6.16 Total: 17.59 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -11.06 Total: -136.63 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -0.09 Total: -52.41 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.26 -4.30 -75.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274753476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.747 kcal (2) G-P(sol) polarization free energy of solvation -71.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds