Wall clock time and date at job start Tue Mar 31 2020 22:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 120.00341 * 2 1 4 4 O 1.21274 * 119.99857 * 179.72061 * 3 2 1 5 5 C 1.50698 * 119.99691 * 359.72380 * 3 2 1 6 6 H 1.08999 * 109.46526 * 319.98085 * 5 3 2 7 7 C 1.53035 * 109.46463 * 79.94987 * 5 3 2 8 8 C 1.53116 * 109.28207 * 179.19208 * 7 5 3 9 9 C 1.53113 * 109.16089 * 302.34586 * 8 7 5 10 10 C 1.53034 * 109.28175 * 57.65055 * 9 8 7 11 11 N 1.46847 * 109.45793 * 199.99882 * 5 3 2 12 12 C 1.46899 * 111.00168 * 54.14713 * 11 5 3 13 13 C 1.46500 * 119.99657 * 179.72112 * 2 1 3 14 14 C 1.53938 * 113.73252 * 42.99342 * 13 2 1 15 15 N 1.48196 * 86.09971 * 221.95454 * 14 13 2 16 16 C 1.46897 * 111.06895 * 137.51875 * 15 14 13 17 17 C 1.50701 * 109.47345 * 90.56661 * 16 15 14 18 18 O 1.21293 * 119.99917 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00109 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00253 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99338 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00226 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00226 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46949 * 90.00194 * 24 22 20 26 26 H 1.48495 * 109.46877 * 210.00062 * 24 22 20 27 27 H 1.48494 * 109.47044 * 329.99895 * 24 22 20 28 28 C 1.47957 * 90.79809 * 24.59928 * 15 14 13 29 29 H 1.08996 * 109.47042 * 275.45962 * 1 2 3 30 30 H 1.09003 * 109.46677 * 35.45549 * 1 2 3 31 31 H 1.08997 * 109.47457 * 155.45310 * 1 2 3 32 32 H 1.09002 * 109.49998 * 299.13431 * 7 5 3 33 33 H 1.09003 * 109.50482 * 59.25053 * 7 5 3 34 34 H 1.09002 * 109.52658 * 182.43740 * 8 7 5 35 35 H 1.09003 * 109.52022 * 62.24479 * 8 7 5 36 36 H 1.09005 * 109.50552 * 297.71298 * 9 8 7 37 37 H 1.09004 * 109.50531 * 177.59232 * 9 8 7 38 38 H 1.09000 * 109.46836 * 180.81020 * 10 9 8 39 39 H 1.09002 * 109.45588 * 60.82879 * 10 9 8 40 40 H 1.09002 * 109.46854 * 59.99630 * 12 11 5 41 41 H 1.09004 * 109.47296 * 179.97438 * 12 11 5 42 42 H 1.09002 * 109.46912 * 300.00149 * 12 11 5 43 43 H 1.08996 * 112.93925 * 174.55397 * 13 2 1 44 44 H 1.09001 * 113.75883 * 336.23000 * 14 13 2 45 45 H 1.08993 * 113.76230 * 107.60222 * 14 13 2 46 46 H 1.09008 * 109.47259 * 210.56421 * 16 15 14 47 47 H 1.09000 * 109.47587 * 330.56497 * 16 15 14 48 48 H 0.97000 * 120.00457 * 0.02562 * 19 17 16 49 49 H 0.97001 * 119.99911 * 180.02562 * 23 22 20 50 50 H 1.09005 * 113.75897 * 221.08832 * 28 15 14 51 51 H 1.08998 * 113.76204 * 89.72288 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 0.0051 5 6 1.3855 2.4723 -0.0063 6 1 0.5251 2.3917 -0.6705 7 6 0.9066 2.7914 1.4117 8 6 0.1592 4.1278 1.4042 9 6 1.0865 5.2191 0.8626 10 6 1.5603 4.8297 -0.5395 11 7 2.2697 3.5453 -0.4787 12 6 2.8586 3.2070 -1.7813 13 6 2.1974 -1.2688 0.0062 14 6 1.6145 -2.3253 -0.9496 15 7 1.8525 -3.2980 0.1428 16 6 0.7170 -4.2188 0.2866 17 6 0.9410 -5.4317 -0.5794 18 8 1.9477 -5.5205 -1.2500 19 7 0.0231 -6.4181 -0.6078 20 6 0.2271 -7.5218 -1.3952 21 1 1.1236 -7.6008 -1.9924 22 6 -0.7194 -8.5386 -1.4250 23 7 -1.8104 -8.4421 -0.6988 24 14 -0.4410 -10.0426 -2.4973 25 1 0.2839 -11.0785 -1.7185 26 1 -1.7509 -10.5834 -2.9411 27 1 0.3651 -9.6616 -3.6848 28 6 1.7878 -2.2152 1.1490 29 1 -0.3633 0.0978 1.0230 30 1 -0.3633 0.8371 -0.5961 31 1 -0.3634 -0.9347 -0.4269 32 1 0.2379 2.0024 1.7561 33 1 1.7655 2.8586 2.0795 34 1 -0.1462 4.3801 2.4196 35 1 -0.7216 4.0489 0.7668 36 1 1.9483 5.3246 1.5216 37 1 0.5465 6.1648 0.8146 38 1 2.2323 5.5979 -0.9223 39 1 0.6991 4.7379 -1.2013 40 1 2.0636 3.0617 -2.5127 41 1 3.5086 4.0188 -2.1080 42 1 3.4403 2.2897 -1.6898 43 1 3.2752 -1.1376 -0.0897 44 1 0.5601 -2.1741 -1.1810 45 1 2.2247 -2.5003 -1.8356 46 1 0.6291 -4.5275 1.3284 47 1 -0.1997 -3.7164 -0.0220 48 1 -0.7818 -6.3474 -0.0713 49 1 -2.4710 -9.1522 -0.7194 50 1 2.5362 -2.3023 1.9366 51 1 0.7842 -2.0317 1.5328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277618172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:54 Heat of formation + Delta-G solvation = -13.299963 kcal Electronic energy + Delta-G solvation = -30091.298466 eV Core-core repulsion = 26027.363707 eV Total energy + Delta-G solvation = -4063.934759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09804 -39.86187 -38.18189 -37.57080 -35.26001 -33.88933 -33.78288 -31.72374 -31.23889 -29.87360 -27.38810 -27.15614 -26.13974 -25.64331 -24.49163 -23.45317 -22.97740 -20.71411 -19.86084 -19.37131 -18.94763 -17.92973 -17.55174 -16.78132 -16.15112 -15.91392 -15.85048 -15.38111 -15.25518 -14.73942 -14.71146 -14.55387 -14.14218 -14.02304 -13.92431 -13.57428 -13.42494 -13.16438 -13.05805 -12.95813 -12.65197 -12.60574 -12.21436 -12.19060 -11.95205 -11.75951 -11.64079 -11.50867 -11.27514 -11.15808 -11.07369 -10.98866 -10.81916 -10.66782 -10.39414 -10.21295 -9.75451 -9.49922 -8.82963 -8.77849 -8.63429 -8.19752 -7.95948 -6.41676 -3.82290 2.36598 2.58574 3.17899 3.26329 3.32343 3.53473 3.89164 3.94060 4.12620 4.22594 4.33580 4.45612 4.49062 4.52530 4.67720 4.72625 4.81224 4.83021 4.95334 5.01725 5.11892 5.14577 5.16036 5.19370 5.23326 5.27379 5.32513 5.34739 5.42123 5.51022 5.51216 5.61540 5.65071 5.68591 5.70160 5.72043 5.82703 5.88100 5.93901 6.07282 6.21167 6.30889 6.51826 6.60537 6.71546 7.07687 7.18045 7.55390 7.98642 8.06353 8.62383 9.18842 9.54728 10.07296 10.76215 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.001956 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.477136 B =14310.342786 C =14590.197374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.606 5.606 3 C 0.519 3.481 4 O -0.517 6.517 5 C 0.070 3.930 6 H 0.062 0.938 7 C -0.108 4.108 8 C -0.119 4.119 9 C -0.120 4.120 10 C 0.056 3.944 11 N -0.521 5.521 12 C 0.014 3.986 13 C 0.117 3.883 14 C 0.000 4.000 15 N -0.444 5.444 16 C 0.014 3.986 17 C 0.446 3.554 18 O -0.574 6.574 19 N -0.567 5.567 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.011 4.011 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.020 0.980 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.130 0.870 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.056 0.944 48 H 0.391 0.609 49 H 0.271 0.729 50 H 0.094 0.906 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 27.362 4.564 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.340 5.340 3 C 0.306 3.694 4 O -0.391 6.391 5 C -0.041 4.041 6 H 0.080 0.920 7 C -0.146 4.146 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.071 4.071 11 N -0.246 5.246 12 C -0.134 4.134 13 C 0.013 3.987 14 C -0.129 4.129 15 N -0.166 5.166 16 C -0.119 4.119 17 C 0.231 3.769 18 O -0.457 6.457 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.142 4.142 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.148 0.852 44 H 0.091 0.909 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.074 0.926 48 H 0.224 0.776 49 H 0.081 0.919 50 H 0.113 0.887 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.646 26.759 4.423 27.130 hybrid contribution -2.176 -0.557 -0.711 2.356 sum -1.529 26.202 3.713 26.508 Atomic orbital electron populations 1.21938 0.79744 1.03736 1.02108 1.47943 1.06845 1.05797 1.73406 1.20453 0.88122 0.84786 0.76000 1.90682 1.13624 1.86869 1.47946 1.21656 0.93996 0.89795 0.98680 0.92016 1.21553 1.00817 0.97915 0.94304 1.21575 0.97971 0.94484 1.01645 1.21623 0.99719 0.98020 0.96378 1.22146 0.96784 0.91154 0.97066 1.61638 1.33346 1.01296 1.28340 1.22601 0.98997 1.03877 0.87911 1.23182 0.99028 0.80417 0.96064 1.24503 1.00627 0.90321 0.97491 1.68376 1.37739 1.08028 1.02477 1.22457 0.92604 0.95514 1.01282 1.19670 0.85616 0.84957 0.86695 1.90533 1.28879 1.80046 1.46203 1.41870 1.19920 1.17341 1.41339 1.19697 1.06221 0.95284 1.21479 0.87958 1.25250 0.95246 0.99477 0.98046 1.69609 1.09534 1.34736 1.40640 0.85860 0.77510 0.80943 0.80000 1.20394 1.20965 1.19441 1.24474 1.01543 0.91190 0.96944 0.92058 0.91039 0.90205 0.90833 0.90261 0.91137 0.92007 0.90789 0.91304 0.90275 0.94920 0.96170 0.91178 0.89201 0.85172 0.90924 0.88384 0.89280 0.92584 0.77590 0.91930 0.88717 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 8.60 59.85 0.51 1.01 16 2 N -0.61 -6.33 3.10 -175.27 -0.54 -6.87 16 3 C 0.52 6.08 6.12 -10.99 -0.07 6.01 16 4 O -0.52 -7.95 13.98 5.56 0.08 -7.87 16 5 C 0.07 0.63 1.53 -68.88 -0.11 0.53 16 6 H 0.06 0.48 6.37 -51.93 -0.33 0.15 16 7 C -0.11 -0.79 5.28 -26.65 -0.14 -0.93 16 8 C -0.12 -0.67 6.00 -26.61 -0.16 -0.83 16 9 C -0.12 -0.71 6.09 -26.66 -0.16 -0.88 16 10 C 0.06 0.40 5.46 -3.83 -0.02 0.38 16 11 N -0.52 -5.04 4.51 -236.32 -1.07 -6.11 16 12 C 0.01 0.14 9.10 60.06 0.55 0.68 16 13 C 0.12 1.47 4.41 -69.62 -0.31 1.16 16 14 C 0.00 0.00 7.45 -2.63 -0.02 -0.02 16 15 N -0.44 -7.32 5.65 -239.66 -1.35 -8.67 16 16 C 0.01 0.24 5.28 -4.98 -0.03 0.21 16 17 C 0.45 10.60 7.83 -10.99 -0.09 10.52 16 18 O -0.57 -15.94 16.01 5.55 0.09 -15.85 16 19 N -0.57 -14.38 5.29 -10.96 -0.06 -14.44 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 24 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C -0.01 -0.14 7.54 -2.76 -0.02 -0.16 16 29 H 0.06 0.36 7.35 -51.93 -0.38 -0.02 16 30 H 0.07 0.41 6.17 -51.93 -0.32 0.09 16 31 H 0.08 0.61 5.77 -51.93 -0.30 0.31 16 32 H 0.07 0.46 6.74 -51.93 -0.35 0.11 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 42 H 0.09 1.11 5.62 -51.93 -0.29 0.82 16 43 H 0.13 1.88 7.18 -51.93 -0.37 1.51 16 44 H 0.07 0.93 5.33 -51.93 -0.28 0.65 16 45 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 46 H 0.09 1.41 8.08 -51.92 -0.42 0.99 16 47 H 0.06 0.84 7.39 -51.93 -0.38 0.46 16 48 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 49 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 51 H 0.07 0.74 7.27 -51.93 -0.38 0.36 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -34.04 394.44 -9.79 -43.83 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.28 Total: 8.03 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -0.30 Total: 9.67 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -2.30 Total: -59.87 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.17 Total: -23.72 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.04 -9.79 -43.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277618172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.532 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds