Wall clock time and date at job start Tue Mar 31 2020 22:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 120.00341 * 2 1 4 4 O 1.21274 * 119.99857 * 179.72061 * 3 2 1 5 5 C 1.50698 * 119.99691 * 359.72380 * 3 2 1 6 6 H 1.08999 * 109.46526 * 319.98085 * 5 3 2 7 7 C 1.53035 * 109.46463 * 79.94987 * 5 3 2 8 8 C 1.53116 * 109.28207 * 179.19208 * 7 5 3 9 9 C 1.53113 * 109.16089 * 302.34586 * 8 7 5 10 10 C 1.53034 * 109.28175 * 57.65055 * 9 8 7 11 11 N 1.46847 * 109.45793 * 199.99882 * 5 3 2 12 12 C 1.46899 * 111.00168 * 54.14713 * 11 5 3 13 13 C 1.46500 * 119.99657 * 179.72112 * 2 1 3 14 14 C 1.53938 * 113.73252 * 42.99342 * 13 2 1 15 15 N 1.48196 * 86.09971 * 221.95454 * 14 13 2 16 16 C 1.46897 * 111.06895 * 137.51875 * 15 14 13 17 17 C 1.50701 * 109.47345 * 90.56661 * 16 15 14 18 18 O 1.21293 * 119.99917 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00109 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00253 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99338 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00226 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00226 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46949 * 90.00194 * 24 22 20 26 26 H 1.48495 * 109.46877 * 210.00062 * 24 22 20 27 27 H 1.48494 * 109.47044 * 329.99895 * 24 22 20 28 28 C 1.47957 * 90.79809 * 24.59928 * 15 14 13 29 29 H 1.08996 * 109.47042 * 275.45962 * 1 2 3 30 30 H 1.09003 * 109.46677 * 35.45549 * 1 2 3 31 31 H 1.08997 * 109.47457 * 155.45310 * 1 2 3 32 32 H 1.09002 * 109.49998 * 299.13431 * 7 5 3 33 33 H 1.09003 * 109.50482 * 59.25053 * 7 5 3 34 34 H 1.09002 * 109.52658 * 182.43740 * 8 7 5 35 35 H 1.09003 * 109.52022 * 62.24479 * 8 7 5 36 36 H 1.09005 * 109.50552 * 297.71298 * 9 8 7 37 37 H 1.09004 * 109.50531 * 177.59232 * 9 8 7 38 38 H 1.09000 * 109.46836 * 180.81020 * 10 9 8 39 39 H 1.09002 * 109.45588 * 60.82879 * 10 9 8 40 40 H 1.09002 * 109.46854 * 59.99630 * 12 11 5 41 41 H 1.09004 * 109.47296 * 179.97438 * 12 11 5 42 42 H 1.09002 * 109.46912 * 300.00149 * 12 11 5 43 43 H 1.08996 * 112.93925 * 174.55397 * 13 2 1 44 44 H 1.09001 * 113.75883 * 336.23000 * 14 13 2 45 45 H 1.08993 * 113.76230 * 107.60222 * 14 13 2 46 46 H 1.09008 * 109.47259 * 210.56421 * 16 15 14 47 47 H 1.09000 * 109.47587 * 330.56497 * 16 15 14 48 48 H 0.97000 * 120.00457 * 0.02562 * 19 17 16 49 49 H 0.97001 * 119.99911 * 180.02562 * 23 22 20 50 50 H 1.09005 * 113.75897 * 221.08832 * 28 15 14 51 51 H 1.08998 * 113.76204 * 89.72288 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 0.0051 5 6 1.3855 2.4723 -0.0063 6 1 0.5251 2.3917 -0.6705 7 6 0.9066 2.7914 1.4117 8 6 0.1592 4.1278 1.4042 9 6 1.0865 5.2191 0.8626 10 6 1.5603 4.8297 -0.5395 11 7 2.2697 3.5453 -0.4787 12 6 2.8586 3.2070 -1.7813 13 6 2.1974 -1.2688 0.0062 14 6 1.6145 -2.3253 -0.9496 15 7 1.8525 -3.2980 0.1428 16 6 0.7170 -4.2188 0.2866 17 6 0.9410 -5.4317 -0.5794 18 8 1.9477 -5.5205 -1.2500 19 7 0.0231 -6.4181 -0.6078 20 6 0.2271 -7.5218 -1.3952 21 1 1.1236 -7.6008 -1.9924 22 6 -0.7194 -8.5386 -1.4250 23 7 -1.8104 -8.4421 -0.6988 24 14 -0.4410 -10.0426 -2.4973 25 1 0.2839 -11.0785 -1.7185 26 1 -1.7509 -10.5834 -2.9411 27 1 0.3651 -9.6616 -3.6848 28 6 1.7878 -2.2152 1.1490 29 1 -0.3633 0.0978 1.0230 30 1 -0.3633 0.8371 -0.5961 31 1 -0.3634 -0.9347 -0.4269 32 1 0.2379 2.0024 1.7561 33 1 1.7655 2.8586 2.0795 34 1 -0.1462 4.3801 2.4196 35 1 -0.7216 4.0489 0.7668 36 1 1.9483 5.3246 1.5216 37 1 0.5465 6.1648 0.8146 38 1 2.2323 5.5979 -0.9223 39 1 0.6991 4.7379 -1.2013 40 1 2.0636 3.0617 -2.5127 41 1 3.5086 4.0188 -2.1080 42 1 3.4403 2.2897 -1.6898 43 1 3.2752 -1.1376 -0.0897 44 1 0.5601 -2.1741 -1.1810 45 1 2.2247 -2.5003 -1.8356 46 1 0.6291 -4.5275 1.3284 47 1 -0.1997 -3.7164 -0.0220 48 1 -0.7818 -6.3474 -0.0713 49 1 -2.4710 -9.1522 -0.7194 50 1 2.5362 -2.3023 1.9366 51 1 0.7842 -2.0317 1.5328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277618172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:53 Heat of formation + Delta-G solvation = -40.488963 kcal Electronic energy + Delta-G solvation = -30092.477469 eV Core-core repulsion = 26027.363707 eV Total energy + Delta-G solvation = -4065.113762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02586 -40.89771 -39.67023 -38.69162 -36.23687 -35.86591 -34.39149 -33.30502 -32.41923 -31.08194 -28.10602 -27.95117 -27.32430 -27.04739 -25.71345 -24.33316 -23.78762 -21.55543 -20.99453 -20.61986 -20.02581 -19.80596 -18.45879 -17.84052 -17.67941 -16.89874 -16.66916 -16.53596 -16.35204 -16.06059 -15.87615 -15.63489 -15.31883 -15.14091 -15.00496 -14.48495 -14.43104 -14.07663 -13.94716 -13.89813 -13.72717 -13.53168 -13.43664 -13.34707 -13.03306 -12.86146 -12.77102 -12.66631 -12.42944 -12.34200 -12.16862 -12.13336 -11.86556 -11.81191 -11.60888 -11.50533 -11.31565 -10.62042 -10.38547 -10.00962 -9.73532 -9.67626 -9.29504 -8.46967 -5.95303 1.37167 1.40954 1.49615 1.53315 1.74920 2.06052 2.28581 2.74862 2.91687 3.19321 3.31108 3.39939 3.49798 3.70547 3.81038 3.89634 3.99110 4.05252 4.16002 4.18549 4.22580 4.26227 4.32543 4.40390 4.42871 4.49419 4.52259 4.53436 4.61989 4.66883 4.75163 4.77799 4.81683 4.90300 4.95260 4.98379 5.04696 5.07903 5.20547 5.26765 5.32880 5.39221 5.41480 5.47075 5.85309 5.91535 6.05883 6.09323 6.35635 6.61215 7.12413 7.13578 7.56987 8.14143 8.70333 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.001956 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.477136 B =14310.342786 C =14590.197374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.601 5.601 3 C 0.514 3.486 4 O -0.564 6.564 5 C 0.076 3.924 6 H 0.081 0.919 7 C -0.105 4.105 8 C -0.115 4.115 9 C -0.119 4.119 10 C 0.055 3.945 11 N -0.542 5.542 12 C 0.019 3.981 13 C 0.128 3.872 14 C 0.001 3.999 15 N -0.482 5.482 16 C 0.028 3.972 17 C 0.440 3.560 18 O -0.621 6.621 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.075 0.925 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.275 1.275 28 C 0.004 3.996 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.029 0.971 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.111 0.889 47 H 0.089 0.911 48 H 0.397 0.603 49 H 0.278 0.722 50 H 0.096 0.904 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 28.698 5.487 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.334 5.334 3 C 0.303 3.697 4 O -0.442 6.442 5 C -0.036 4.036 6 H 0.098 0.902 7 C -0.143 4.143 8 C -0.152 4.152 9 C -0.156 4.156 10 C -0.072 4.072 11 N -0.268 5.268 12 C -0.129 4.129 13 C 0.023 3.977 14 C -0.128 4.128 15 N -0.205 5.205 16 C -0.103 4.103 17 C 0.227 3.773 18 O -0.507 6.507 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.093 0.907 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.200 1.200 28 C -0.125 4.125 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.129 0.871 47 H 0.107 0.893 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.114 0.886 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.227 28.116 5.376 28.712 hybrid contribution -1.259 -0.932 -1.004 1.860 sum -3.486 27.184 4.372 27.754 Atomic orbital electron populations 1.22241 0.77244 1.04650 1.04087 1.47968 1.08238 1.04551 1.72636 1.21065 0.87775 0.85926 0.74976 1.90665 1.15827 1.87547 1.50128 1.21700 0.93763 0.87970 1.00143 0.90160 1.21572 1.00462 0.99677 0.92560 1.21579 0.97936 0.93032 1.02687 1.21636 0.99552 0.99166 0.95273 1.22228 0.96984 0.89834 0.98131 1.61623 1.34558 1.02519 1.28119 1.22474 0.99137 1.02705 0.88593 1.22744 0.97825 0.81403 0.95759 1.24489 1.01449 0.90468 0.96404 1.68295 1.38026 1.09630 1.04584 1.22336 0.94252 0.93014 1.00744 1.20851 0.84200 0.86027 0.86180 1.90502 1.30713 1.81272 1.48231 1.41926 1.20580 1.17352 1.41377 1.19619 1.06205 0.97374 1.23061 0.90702 1.25992 0.94723 1.01572 0.98896 1.69657 1.09765 1.35618 1.40923 0.84962 0.77918 0.77538 0.78123 1.19755 1.19326 1.20003 1.24478 1.03282 0.88747 0.95986 0.89675 0.89119 0.90136 0.89164 0.92465 0.89974 0.90543 0.92197 0.89384 0.90043 0.93881 0.95298 0.90442 0.92270 0.87951 0.88774 0.91312 0.87114 0.89344 0.76894 0.91284 0.88601 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 8.60 127.77 1.10 1.75 16 2 N -0.60 -11.69 3.10 -826.83 -2.56 -14.25 16 3 C 0.51 11.82 6.12 87.66 0.54 12.35 16 4 O -0.56 -18.16 13.98 -3.01 -0.04 -18.20 16 5 C 0.08 1.23 1.53 44.19 0.07 1.30 16 6 H 0.08 1.01 6.37 -2.39 -0.02 0.99 16 7 C -0.10 -1.29 5.28 30.64 0.16 -1.13 16 8 C -0.11 -0.93 6.00 30.67 0.18 -0.74 16 9 C -0.12 -1.14 6.09 30.64 0.19 -0.95 16 10 C 0.06 0.68 5.46 86.32 0.47 1.15 16 11 N -0.54 -10.06 4.51 -901.58 -4.07 -14.13 16 12 C 0.02 0.37 9.10 127.69 1.16 1.53 16 13 C 0.13 3.18 4.41 46.56 0.21 3.39 16 14 C 0.00 0.04 7.45 86.37 0.64 0.68 16 15 N -0.48 -15.57 5.65 -912.15 -5.15 -20.72 16 16 C 0.03 0.93 5.28 85.56 0.45 1.39 16 17 C 0.44 21.12 7.83 87.66 0.69 21.80 16 18 O -0.62 -35.71 16.01 -3.07 -0.05 -35.76 16 19 N -0.57 -29.38 5.29 -306.99 -1.62 -31.00 16 20 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 21 H 0.07 4.62 7.16 -2.91 -0.02 4.60 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.06 13.05 21.66 0.28 -48.77 16 24 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 C 0.00 0.10 7.54 86.41 0.65 0.75 16 29 H 0.08 0.59 7.35 -2.39 -0.02 0.57 16 30 H 0.09 0.68 6.17 -2.39 -0.01 0.67 16 31 H 0.08 0.92 5.77 -2.39 -0.01 0.90 16 32 H 0.09 0.79 6.74 -2.39 -0.02 0.78 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 39 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 42 H 0.06 1.55 5.62 -2.39 -0.01 1.54 16 43 H 0.10 3.16 7.18 -2.39 -0.02 3.14 16 44 H 0.09 2.23 5.33 -2.39 -0.01 2.22 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.11 3.19 8.08 -2.38 -0.02 3.17 16 47 H 0.09 2.36 7.39 -2.39 -0.02 2.34 16 48 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 49 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 50 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 51 H 0.10 1.72 7.27 -2.39 -0.02 1.70 16 Total: -1.00 -77.51 394.44 -3.18 -80.69 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.21 Total: 32.14 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 7.79 Total: 24.88 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -13.12 Total: -128.88 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -0.09 Total: -53.97 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -77.51 -3.18 -80.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277618172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.200 kcal (2) G-P(sol) polarization free energy of solvation -77.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds