Wall clock time and date at job start Tue Mar 31 2020 21:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46966 * 2 1 4 4 C 1.34780 * 120.00197 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99935 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00343 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.46932 * 180.02562 * 6 4 3 8 8 O 1.21274 * 120.00413 * 359.97438 * 7 6 4 9 9 N 1.34782 * 119.99454 * 180.02562 * 7 6 4 10 10 C 1.47016 * 125.65051 * 359.68630 * 9 7 6 11 11 C 1.54329 * 107.27212 * 181.32952 * 10 9 7 12 12 C 1.55155 * 102.94071 * 22.18887 * 11 10 9 13 13 H 1.08999 * 111.00309 * 82.57779 * 12 11 10 14 14 N 1.46901 * 111.03631 * 206.41051 * 12 11 10 15 15 C 1.46905 * 111.00137 * 296.28428 * 14 12 11 16 16 C 1.53234 * 109.34077 * 172.74692 * 15 14 12 17 17 N 1.47078 * 108.52112 * 53.82749 * 16 15 14 18 18 C 1.36942 * 120.88054 * 128.83718 * 17 16 15 19 19 H 1.08000 * 120.00114 * 208.56640 * 18 17 16 20 20 C 1.38810 * 119.99667 * 28.56894 * 18 17 16 21 21 N 1.31615 * 120.00535 * 15.04416 * 20 18 17 22 22 Si 1.86803 * 119.99837 * 195.04100 * 20 18 17 23 23 H 1.48501 * 109.47272 * 59.99926 * 22 20 18 24 24 H 1.48495 * 109.47043 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47050 * 300.00281 * 22 20 18 26 26 C 1.47078 * 118.24126 * 308.81693 * 17 16 15 27 27 C 1.46897 * 110.99794 * 171.98066 * 14 12 11 28 28 C 1.47422 * 125.64292 * 180.02562 * 9 7 6 29 29 H 1.09005 * 109.46638 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47559 * 300.00091 * 1 2 3 31 31 H 1.08999 * 109.46716 * 60.00762 * 1 2 3 32 32 H 1.08996 * 109.47559 * 239.99909 * 2 1 3 33 33 H 1.09005 * 109.47246 * 119.99682 * 2 1 3 34 34 H 0.97001 * 120.00654 * 359.97438 * 3 2 1 35 35 H 1.08996 * 109.46984 * 59.99628 * 6 4 3 36 36 H 1.09000 * 109.46409 * 299.99769 * 6 4 3 37 37 H 1.09001 * 109.88275 * 300.74702 * 10 9 7 38 38 H 1.09002 * 109.88669 * 61.90738 * 10 9 7 39 39 H 1.09005 * 110.71381 * 263.83114 * 11 10 9 40 40 H 1.08992 * 110.87169 * 140.63077 * 11 10 9 41 41 H 1.09004 * 109.49043 * 292.71069 * 15 14 12 42 42 H 1.08997 * 109.49287 * 52.78357 * 15 14 12 43 43 H 1.09004 * 109.62997 * 294.12364 * 16 15 14 44 44 H 1.08997 * 109.79371 * 173.63538 * 16 15 14 45 45 H 0.96992 * 120.00727 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.62929 * 291.47428 * 26 17 16 47 47 H 1.08997 * 109.79260 * 170.98425 * 26 17 16 48 48 H 1.08991 * 109.49776 * 307.21296 * 27 14 12 49 49 H 1.09003 * 109.49472 * 67.29901 * 27 14 12 50 50 H 1.09002 * 110.36770 * 274.43770 * 28 9 7 51 51 H 1.08994 * 110.37303 * 36.76603 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1315 0.7058 0.0015 6 6 3.8457 3.0484 0.0011 7 6 5.3527 3.0484 0.0010 8 8 5.9591 1.9981 0.0009 9 7 6.0265 4.2156 0.0020 10 6 5.4203 5.5550 -0.0033 11 6 6.5737 6.5799 -0.0341 12 6 7.7540 5.7574 -0.6153 13 1 7.7048 5.7190 -1.7035 14 7 9.0444 6.2985 -0.1682 15 6 9.2479 7.6620 -0.6757 16 6 10.5114 8.2555 -0.0438 17 7 11.6304 7.3306 -0.2797 18 6 12.8086 7.7756 -0.8173 19 1 13.4230 7.1058 -1.4008 20 6 13.2133 9.0875 -0.6124 21 7 12.6401 9.8146 0.3230 22 14 14.5717 9.8210 -1.6642 23 1 14.1637 9.7903 -3.0917 24 1 14.8156 11.2256 -1.2487 25 1 15.8161 9.0299 -1.4880 26 6 11.4506 5.9153 0.0776 27 6 10.1501 5.4139 -0.5591 28 6 7.4936 4.3607 0.0014 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 3.4820 3.5619 0.8911 36 1 3.4827 3.5624 -0.8889 37 1 4.7941 5.6750 -0.8874 38 1 4.8235 5.6954 0.8979 39 1 6.8058 6.9294 0.9720 40 1 6.3304 7.4189 -0.6857 41 1 9.3621 7.6335 -1.7594 42 1 8.3874 8.2788 -0.4165 43 1 10.3602 8.3812 1.0284 44 1 10.7326 9.2213 -0.4980 45 1 12.9231 10.7311 0.4665 46 1 11.3897 5.8161 1.1613 47 1 12.2908 5.3305 -0.2969 48 1 9.9440 4.4003 -0.2153 49 1 10.2519 5.4166 -1.6444 50 1 7.8794 4.3182 1.0200 51 1 7.9514 3.5842 -0.6112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280679766.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:35 Heat of formation + Delta-G solvation = -55.966541 kcal Electronic energy + Delta-G solvation = -29657.212455 eV Core-core repulsion = 25591.427535 eV Total energy + Delta-G solvation = -4065.784920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51547 -40.51494 -39.48900 -37.99492 -36.19448 -35.78330 -33.50245 -32.66317 -31.82095 -31.49462 -30.43901 -29.38455 -27.60113 -25.20833 -24.44609 -24.08504 -23.34730 -21.91140 -21.51438 -20.81180 -20.12966 -18.82689 -18.51337 -17.71254 -17.45201 -17.03953 -16.83486 -16.69756 -16.09716 -15.89421 -15.58914 -15.42601 -15.25236 -15.22876 -14.94815 -14.77570 -14.51044 -14.41772 -13.95360 -13.68000 -13.58842 -13.31094 -13.22952 -12.95524 -12.94043 -12.66713 -12.66271 -12.54504 -12.50671 -12.32247 -12.18503 -12.01967 -11.87062 -11.77327 -11.43940 -11.36262 -11.19119 -10.58393 -10.52301 -10.06098 -9.63508 -9.31856 -8.65373 -7.87533 -5.34484 1.47191 1.48577 1.55936 1.61079 1.69994 1.72028 2.40447 2.50781 2.97492 3.28136 3.31337 3.60691 3.67838 3.73695 3.96956 4.08636 4.19246 4.21690 4.22960 4.32187 4.34124 4.38204 4.40849 4.43389 4.54103 4.56525 4.59879 4.68651 4.69736 4.84353 4.87837 4.93734 4.97800 5.02898 5.07042 5.08077 5.19511 5.24371 5.29026 5.32075 5.37075 5.51211 5.61251 5.71220 6.13332 6.25349 6.38610 6.51291 6.63041 7.14536 7.17915 7.38994 7.83626 8.38647 9.18920 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.041452 B = 0.001824 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.318304 B =15343.893101 C =15759.615711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.717 5.717 4 C 0.502 3.498 5 O -0.562 6.562 6 C -0.144 4.144 7 C 0.517 3.483 8 O -0.563 6.563 9 N -0.619 5.619 10 C 0.102 3.898 11 C -0.119 4.119 12 C 0.070 3.930 13 H 0.051 0.949 14 N -0.527 5.527 15 C 0.056 3.944 16 C 0.186 3.814 17 N -0.614 5.614 18 C -0.269 4.269 19 H 0.063 0.937 20 C -0.046 4.046 21 N -0.933 5.933 22 Si 0.969 3.031 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.145 3.855 27 C 0.054 3.946 28 C 0.121 3.879 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.420 0.580 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.018 0.982 42 H 0.094 0.906 43 H 0.001 0.999 44 H 0.057 0.943 45 H 0.252 0.748 46 H 0.015 0.985 47 H 0.056 0.944 48 H 0.082 0.918 49 H 0.022 0.978 50 H 0.065 0.935 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.794 -9.178 -1.561 32.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 N -0.372 5.372 4 C 0.287 3.713 5 O -0.439 6.439 6 C -0.186 4.186 7 C 0.305 3.695 8 O -0.440 6.440 9 N -0.355 5.355 10 C -0.020 4.020 11 C -0.157 4.157 12 C -0.039 4.039 13 H 0.068 0.932 14 N -0.252 5.252 15 C -0.073 4.073 16 C 0.060 3.940 17 N -0.338 5.338 18 C -0.399 4.399 19 H 0.080 0.920 20 C -0.242 4.242 21 N -0.579 5.579 22 Si 0.797 3.203 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.020 3.980 27 C -0.075 4.075 28 C -0.003 4.003 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.258 0.742 35 H 0.181 0.819 36 H 0.181 0.819 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.036 0.964 42 H 0.112 0.888 43 H 0.019 0.981 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.033 0.967 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.040 0.960 50 H 0.083 0.917 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -29.932 -10.314 -1.000 31.675 hybrid contribution 1.319 0.584 -1.123 1.828 sum -28.613 -9.729 -2.122 30.296 Atomic orbital electron populations 1.21938 0.91458 1.04070 1.03594 1.21317 0.96389 0.82766 1.00908 1.45895 1.06124 1.09742 1.75479 1.20655 0.82867 0.91496 0.76252 1.90871 1.56334 1.47644 1.49035 1.21604 0.90865 0.95705 1.10431 1.20496 0.90810 0.81781 0.76363 1.90858 1.70964 1.32108 1.50062 1.48545 1.06752 1.06844 1.73316 1.22363 0.96056 0.78874 1.04659 1.22720 0.92145 0.97734 1.03088 1.22753 0.90245 0.93931 0.96953 0.93153 1.61933 1.01137 1.02377 1.59799 1.22575 0.99289 0.89381 0.96096 1.20641 0.84610 0.92958 0.95811 1.44364 1.11934 1.04219 1.73260 1.19464 0.99186 0.96357 1.24937 0.91971 1.25810 1.00862 0.98978 0.98530 1.70150 1.45894 1.09214 1.32605 0.85330 0.79297 0.77059 0.78644 1.20423 1.21673 1.20375 1.21074 0.95102 0.85574 0.96285 1.22443 0.91784 0.96179 0.97109 1.21973 0.81368 0.96223 1.00728 0.90274 0.90775 0.90772 0.93279 0.93280 0.74213 0.81922 0.81930 0.88069 0.88040 0.89881 0.88114 0.96380 0.88811 0.98127 0.92438 0.93939 0.96659 0.92591 0.89978 0.95978 0.91681 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.03 71.98 0.72 0.11 16 2 C 0.11 1.31 6.39 86.38 0.55 1.86 16 3 N -0.72 -7.47 5.56 -463.06 -2.57 -10.04 16 4 C 0.50 9.69 7.82 87.66 0.69 10.38 16 5 O -0.56 -18.93 14.18 20.41 0.29 -18.64 16 6 C -0.14 -1.64 5.38 29.10 0.16 -1.48 16 7 C 0.52 12.49 7.84 87.66 0.69 13.18 16 8 O -0.56 -21.20 14.43 20.43 0.29 -20.90 16 9 N -0.62 -12.78 3.33 -811.85 -2.70 -15.48 16 10 C 0.10 1.12 6.49 86.73 0.56 1.69 16 11 C -0.12 -1.97 5.43 31.78 0.17 -1.80 16 12 C 0.07 1.75 2.71 46.30 0.13 1.88 16 13 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 14 N -0.53 -17.40 4.53 -861.95 -3.90 -21.30 16 15 C 0.06 2.01 5.49 86.38 0.47 2.48 16 16 C 0.19 8.95 5.40 86.35 0.47 9.41 16 17 N -0.61 -31.75 3.03 -698.15 -2.12 -33.86 16 18 C -0.27 -15.15 9.63 84.03 0.81 -14.34 16 19 H 0.06 3.43 7.87 -2.91 -0.02 3.41 16 20 C -0.05 -2.59 4.97 84.86 0.42 -2.17 16 21 N -0.93 -55.10 11.17 21.65 0.24 -54.86 16 22 Si 0.97 45.04 29.58 68.60 2.03 47.07 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 C 0.15 6.40 6.69 86.35 0.58 6.97 16 27 C 0.05 1.96 5.46 86.38 0.47 2.43 16 28 C 0.12 3.20 5.23 86.85 0.45 3.66 16 29 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.42 0.66 8.47 -92.71 -0.79 -0.13 16 35 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.10 1.33 7.94 -2.39 -0.02 1.31 16 41 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.09 2.80 6.93 -2.39 -0.02 2.78 16 43 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 44 H 0.06 3.09 6.20 -2.39 -0.01 3.08 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 48 H 0.08 2.66 6.73 -2.39 -0.02 2.64 16 49 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.05 1.63 7.74 -2.39 -0.02 1.61 16 Total: -1.00 -87.71 400.51 -0.97 -88.68 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.13 Total: 5.07 kcal Atomic # 6 Polarization: 26.92 SS G_CDS: 7.34 Total: 34.26 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -11.05 Total: -135.54 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: 0.58 Total: -39.54 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -87.71 -0.97 -88.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280679766.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.714 kcal (2) G-P(sol) polarization free energy of solvation -87.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds