Wall clock time and date at job start Tue Mar 31 2020 21:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47106 * 2 1 4 4 C 1.36937 * 119.99983 * 92.31498 * 3 2 1 5 5 H 1.08006 * 119.99629 * 34.89610 * 4 3 2 6 6 C 1.38811 * 119.99953 * 214.89292 * 4 3 2 7 7 N 1.31619 * 119.99836 * 23.62695 * 6 4 3 8 8 Si 1.86804 * 119.99978 * 203.35042 * 6 4 3 9 9 H 1.48503 * 109.46948 * 90.00281 * 8 6 4 10 10 H 1.48502 * 109.46975 * 210.00272 * 8 6 4 11 11 H 1.48495 * 109.46979 * 330.00225 * 8 6 4 12 12 C 1.46496 * 119.99858 * 272.31231 * 3 2 1 13 13 C 1.52995 * 109.47551 * 269.99980 * 12 3 2 14 14 C 1.53038 * 109.46313 * 295.03317 * 13 12 3 15 15 C 1.53193 * 109.31612 * 178.59749 * 14 13 12 16 16 N 1.46927 * 108.76390 * 54.65200 * 15 14 13 17 17 C 1.34777 * 120.62951 * 126.40570 * 16 15 14 18 18 O 1.21284 * 119.99950 * 179.97438 * 17 16 15 19 19 C 1.50703 * 120.00025 * 359.97438 * 17 16 15 20 20 H 1.08998 * 110.49275 * 319.29995 * 19 17 16 21 21 C 1.54102 * 110.54309 * 82.00314 * 19 17 16 22 22 N 1.47051 * 103.86531 * 118.59668 * 21 19 17 23 23 C 1.46502 * 125.41440 * 179.97438 * 22 21 19 24 24 C 1.33956 * 109.17815 * 359.97438 * 22 21 19 25 25 O 1.21583 * 123.04155 * 179.97438 * 24 22 21 26 26 N 1.34262 * 113.96119 * 0.08566 * 24 22 21 27 27 C 1.46921 * 118.73888 * 306.38739 * 16 15 14 28 28 C 1.53045 * 109.46317 * 174.97162 * 13 12 3 29 29 H 1.09002 * 109.47303 * 300.00361 * 1 2 3 30 30 H 1.09003 * 109.47097 * 60.00097 * 1 2 3 31 31 H 1.08994 * 109.46955 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47303 * 239.99639 * 2 1 3 33 33 H 1.09003 * 109.47097 * 119.99903 * 2 1 3 34 34 H 0.97005 * 119.99740 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47441 * 30.00158 * 12 3 2 36 36 H 1.09000 * 109.47126 * 150.00167 * 12 3 2 37 37 H 1.09004 * 109.45590 * 54.99961 * 13 12 3 38 38 H 1.09004 * 109.49537 * 298.56398 * 14 13 12 39 39 H 1.09001 * 109.49827 * 58.65331 * 14 13 12 40 40 H 1.08996 * 109.59736 * 294.86943 * 15 14 13 41 41 H 1.08999 * 109.70424 * 174.50021 * 15 14 13 42 42 H 1.09006 * 110.54519 * 237.18593 * 21 19 17 43 43 H 1.08999 * 110.55371 * 359.85374 * 21 19 17 44 44 H 1.08998 * 109.47120 * 89.99528 * 23 22 21 45 45 H 1.09005 * 109.47058 * 209.99552 * 23 22 21 46 46 H 1.08995 * 109.47028 * 329.99360 * 23 22 21 47 47 H 0.96992 * 125.58369 * 179.97438 * 26 24 22 48 48 H 1.09003 * 109.58780 * 293.81380 * 27 16 15 49 49 H 1.09004 * 109.70365 * 173.46512 * 27 16 15 50 50 H 1.08998 * 109.49876 * 301.33712 * 28 13 12 51 51 H 1.09001 * 109.49500 * 61.40665 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2917 2.0108 1.1849 5 1 2.6968 1.4492 2.0139 6 6 2.0483 3.3706 1.3207 7 7 1.1630 3.9612 0.5462 8 14 2.9717 4.3609 2.6077 9 1 4.2237 4.8967 2.0156 10 1 2.1211 5.4870 3.0699 11 1 3.3042 3.4860 3.7606 12 6 2.2142 2.0889 -1.2677 13 6 3.6413 1.8548 -1.7673 14 6 4.6339 2.4897 -0.7907 15 6 6.0625 2.2233 -1.2756 16 7 6.1886 2.7006 -2.6595 17 6 7.1682 3.5603 -3.0027 18 8 7.2620 3.9465 -4.1486 19 6 8.1469 4.0416 -1.9628 20 1 7.6344 4.2488 -1.0234 21 6 9.2655 3.0030 -1.7511 22 7 10.4907 3.7222 -2.1306 23 6 11.8452 3.1646 -2.1042 24 6 10.1715 4.9684 -2.5043 25 8 10.9971 5.7833 -2.8684 26 7 8.8579 5.2378 -2.4385 27 6 5.2269 2.2225 -3.6620 28 6 3.8077 2.4886 -3.1503 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.9927 4.9115 0.6413 35 1 1.5049 1.7148 -2.0060 36 1 2.0526 3.1562 -1.1167 37 1 3.8317 0.7836 -1.8334 38 1 4.4603 3.5648 -0.7430 39 1 4.4989 2.0546 0.1995 40 1 6.2678 1.1535 -1.2380 41 1 6.7713 2.7541 -0.6400 42 1 9.3101 2.6963 -0.7060 43 1 9.1116 2.1380 -2.3963 44 1 12.0683 2.7064 -3.0677 45 1 12.5622 3.9612 -1.9059 46 1 11.9127 2.4113 -1.3194 47 1 8.4430 6.0838 -2.6684 48 1 5.3641 1.1526 -3.8190 49 1 5.3818 2.7525 -4.6019 50 1 3.0847 2.0527 -3.8397 51 1 3.6414 3.5636 -3.0803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281833486.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:43 Heat of formation + Delta-G solvation = -23.690387 kcal Electronic energy + Delta-G solvation = -31233.485956 eV Core-core repulsion = 27169.100634 eV Total energy + Delta-G solvation = -4064.385321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.57310 -39.77803 -37.71301 -36.36359 -35.79301 -34.30615 -32.97198 -31.87979 -31.03859 -29.58049 -28.84773 -27.56682 -26.62792 -24.51904 -23.80903 -22.87213 -22.47161 -20.76603 -20.64848 -19.77149 -18.97621 -17.93894 -17.53259 -16.73582 -16.49221 -16.21120 -15.42058 -15.18257 -14.84231 -14.42095 -14.40227 -14.21701 -14.10461 -13.90308 -13.68885 -13.45861 -13.29568 -13.18272 -13.01014 -12.68224 -12.58395 -12.35021 -12.19721 -12.05325 -11.86553 -11.24373 -11.11367 -11.00461 -10.84814 -10.63326 -10.47460 -10.40556 -10.30560 -10.18111 -10.08990 -9.87992 -9.72861 -9.59353 -9.35275 -8.82150 -8.58091 -8.52993 -6.65369 -5.85124 -3.38184 2.20333 2.51300 2.72472 3.09041 3.25959 3.35779 3.37782 3.64961 4.00967 4.21001 4.40329 4.51362 4.68447 4.97102 5.00659 5.09962 5.11827 5.24051 5.26633 5.34832 5.40182 5.42154 5.45058 5.56864 5.65761 5.70800 5.83590 5.97212 6.06600 6.20640 6.23989 6.35197 6.37911 6.41719 6.44869 6.55299 6.61556 6.79908 6.87090 6.90081 6.91304 6.93749 7.13873 7.21557 7.22013 7.36780 7.67851 7.75673 8.03377 8.40335 8.43955 9.12979 9.77132 10.35262 11.14524 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.003212 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.519903 B = 8715.933430 C = 9596.473553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 N -0.585 5.585 4 C -0.255 4.255 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.883 5.883 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.278 1.278 12 C 0.150 3.850 13 C -0.099 4.099 14 C -0.117 4.117 15 C 0.098 3.902 16 N -0.598 5.598 17 C 0.503 3.497 18 O -0.533 6.533 19 C 0.101 3.899 20 H 0.120 0.880 21 C 0.108 3.892 22 N -0.637 5.637 23 C 0.122 3.878 24 C 0.706 3.294 25 O -0.584 6.584 26 N -0.715 5.715 27 C 0.115 3.885 28 C -0.128 4.128 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.028 0.972 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.254 0.746 35 H 0.021 0.979 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.434 0.566 48 H 0.065 0.935 49 H 0.085 0.915 50 H 0.069 0.931 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.556 -6.333 -3.595 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 N -0.305 5.305 4 C -0.385 4.385 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.525 5.525 8 Si 0.714 3.286 9 H -0.212 1.212 10 H -0.219 1.219 11 H -0.203 1.203 12 C 0.024 3.976 13 C -0.120 4.120 14 C -0.155 4.155 15 C -0.024 4.024 16 N -0.332 5.332 17 C 0.288 3.712 18 O -0.410 6.410 19 C -0.009 4.009 20 H 0.137 0.863 21 C -0.016 4.016 22 N -0.377 5.377 23 C -0.020 4.020 24 C 0.406 3.594 25 O -0.462 6.462 26 N -0.376 5.376 27 C -0.007 4.007 28 C -0.167 4.167 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.277 0.723 48 H 0.083 0.917 49 H 0.103 0.897 50 H 0.087 0.913 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.125 -5.635 -4.368 14.937 hybrid contribution -0.162 0.836 0.650 1.071 sum 12.963 -4.799 -3.718 14.314 Atomic orbital electron populations 1.22291 0.99970 0.98252 1.01792 1.20858 0.91782 0.87853 0.97922 1.43880 1.74608 1.09747 1.02282 1.18992 1.35864 0.91584 0.92027 0.92143 1.25029 0.96957 0.98792 0.97776 1.70012 1.30743 1.10550 1.41211 0.86584 0.79935 0.80219 0.81881 1.21204 1.21885 1.20278 1.20940 0.89631 1.01370 0.85707 1.21721 0.99927 0.98103 0.92285 1.21912 0.90569 1.01662 1.01356 1.22123 1.00257 0.99518 0.80524 1.48209 1.28970 1.44851 1.11156 1.20618 0.81864 0.79350 0.89339 1.90718 1.73057 1.56948 1.20249 1.21915 0.93911 0.87196 0.97925 0.86293 1.22270 0.82042 0.94811 1.02466 1.46996 1.07436 1.12411 1.70886 1.21394 0.79793 0.99058 1.01706 1.15864 0.82942 0.82557 0.78036 1.90950 1.50943 1.49783 1.54520 1.44917 1.05940 1.14502 1.72287 1.21646 0.88435 0.98979 0.91689 1.21944 0.94593 1.01880 0.98245 0.92756 0.93965 0.95266 0.95187 0.94026 0.93628 0.96092 0.88606 0.92825 0.92203 0.88036 0.91114 0.90659 0.88617 0.89628 0.92653 0.90307 0.90749 0.72307 0.91700 0.89654 0.91287 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.24 37.16 0.38 -2.69 16 2 C 0.14 2.71 6.39 -4.04 -0.03 2.69 16 3 N -0.58 -12.69 2.32 -173.24 -0.40 -13.09 16 4 C -0.26 -6.10 7.36 -15.06 -0.11 -6.21 16 5 H 0.06 1.47 7.93 -52.48 -0.42 1.05 16 6 C 0.02 0.37 4.92 -17.43 -0.09 0.29 16 7 N -0.88 -23.41 11.42 55.49 0.63 -22.78 16 8 Si 0.88 19.57 29.61 -169.99 -5.03 14.54 16 9 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 12 C 0.15 3.06 4.81 -4.05 -0.02 3.04 16 13 C -0.10 -1.60 2.36 -90.58 -0.21 -1.81 16 14 C -0.12 -1.83 4.96 -26.61 -0.13 -1.96 16 15 C 0.10 1.12 6.25 -3.71 -0.02 1.09 16 16 N -0.60 -7.48 2.97 -172.77 -0.51 -8.00 16 17 C 0.50 6.74 6.81 -10.98 -0.07 6.67 16 18 O -0.53 -9.12 15.99 5.55 0.09 -9.03 16 19 C 0.10 1.09 3.16 -68.20 -0.22 0.87 16 20 H 0.12 1.08 6.64 -51.93 -0.34 0.74 16 21 C 0.11 0.94 7.04 -3.17 -0.02 0.92 16 22 N -0.64 -7.02 3.36 -186.64 -0.63 -7.65 16 23 C 0.12 0.97 11.03 59.85 0.66 1.63 16 24 C 0.71 10.21 8.61 -88.11 -0.76 9.45 16 25 O -0.58 -10.57 17.53 5.29 0.09 -10.48 16 26 N -0.72 -9.12 5.64 -59.24 -0.33 -9.46 16 27 C 0.11 1.47 6.43 -3.71 -0.02 1.45 16 28 C -0.13 -1.82 5.36 -26.61 -0.14 -1.96 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.04 0.78 8.02 -51.93 -0.42 0.36 16 34 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 36 H 0.10 2.29 5.41 -51.93 -0.28 2.01 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.10 1.80 6.26 -51.93 -0.33 1.47 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.69 5.41 -51.93 -0.28 0.41 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.71 7.72 -51.93 -0.40 0.31 16 44 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.43 5.27 8.96 -40.82 -0.37 4.91 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 1.18 7.01 -51.93 -0.36 0.81 16 50 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -31.99 399.36 -9.54 -41.53 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.65 Total: 4.94 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: -0.81 Total: 13.45 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -1.24 Total: -60.97 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.18 Total: -19.51 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.99 -9.54 -41.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281833486.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.841 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds