Wall clock time and date at job start Tue Mar 31 2020 21:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47106 * 2 1 4 4 C 1.36937 * 119.99983 * 92.31498 * 3 2 1 5 5 H 1.08006 * 119.99629 * 34.89610 * 4 3 2 6 6 C 1.38811 * 119.99953 * 214.89292 * 4 3 2 7 7 N 1.31619 * 119.99836 * 23.62695 * 6 4 3 8 8 Si 1.86804 * 119.99978 * 203.35042 * 6 4 3 9 9 H 1.48503 * 109.46948 * 90.00281 * 8 6 4 10 10 H 1.48502 * 109.46975 * 210.00272 * 8 6 4 11 11 H 1.48495 * 109.46979 * 330.00225 * 8 6 4 12 12 C 1.46496 * 119.99858 * 272.31231 * 3 2 1 13 13 C 1.52995 * 109.47551 * 269.99980 * 12 3 2 14 14 C 1.53038 * 109.46313 * 295.03317 * 13 12 3 15 15 C 1.53193 * 109.31612 * 178.59749 * 14 13 12 16 16 N 1.46927 * 108.76390 * 54.65200 * 15 14 13 17 17 C 1.34777 * 120.62951 * 126.40570 * 16 15 14 18 18 O 1.21284 * 119.99950 * 179.97438 * 17 16 15 19 19 C 1.50703 * 120.00025 * 359.97438 * 17 16 15 20 20 H 1.08998 * 110.49275 * 319.29995 * 19 17 16 21 21 C 1.54102 * 110.54309 * 82.00314 * 19 17 16 22 22 N 1.47051 * 103.86531 * 118.59668 * 21 19 17 23 23 C 1.46502 * 125.41440 * 179.97438 * 22 21 19 24 24 C 1.33956 * 109.17815 * 359.97438 * 22 21 19 25 25 O 1.21583 * 123.04155 * 179.97438 * 24 22 21 26 26 N 1.34262 * 113.96119 * 0.08566 * 24 22 21 27 27 C 1.46921 * 118.73888 * 306.38739 * 16 15 14 28 28 C 1.53045 * 109.46317 * 174.97162 * 13 12 3 29 29 H 1.09002 * 109.47303 * 300.00361 * 1 2 3 30 30 H 1.09003 * 109.47097 * 60.00097 * 1 2 3 31 31 H 1.08994 * 109.46955 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47303 * 239.99639 * 2 1 3 33 33 H 1.09003 * 109.47097 * 119.99903 * 2 1 3 34 34 H 0.97005 * 119.99740 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47441 * 30.00158 * 12 3 2 36 36 H 1.09000 * 109.47126 * 150.00167 * 12 3 2 37 37 H 1.09004 * 109.45590 * 54.99961 * 13 12 3 38 38 H 1.09004 * 109.49537 * 298.56398 * 14 13 12 39 39 H 1.09001 * 109.49827 * 58.65331 * 14 13 12 40 40 H 1.08996 * 109.59736 * 294.86943 * 15 14 13 41 41 H 1.08999 * 109.70424 * 174.50021 * 15 14 13 42 42 H 1.09006 * 110.54519 * 237.18593 * 21 19 17 43 43 H 1.08999 * 110.55371 * 359.85374 * 21 19 17 44 44 H 1.08998 * 109.47120 * 89.99528 * 23 22 21 45 45 H 1.09005 * 109.47058 * 209.99552 * 23 22 21 46 46 H 1.08995 * 109.47028 * 329.99360 * 23 22 21 47 47 H 0.96992 * 125.58369 * 179.97438 * 26 24 22 48 48 H 1.09003 * 109.58780 * 293.81380 * 27 16 15 49 49 H 1.09004 * 109.70365 * 173.46512 * 27 16 15 50 50 H 1.08998 * 109.49876 * 301.33712 * 28 13 12 51 51 H 1.09001 * 109.49500 * 61.40665 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2917 2.0108 1.1849 5 1 2.6968 1.4492 2.0139 6 6 2.0483 3.3706 1.3207 7 7 1.1630 3.9612 0.5462 8 14 2.9717 4.3609 2.6077 9 1 4.2237 4.8967 2.0156 10 1 2.1211 5.4870 3.0699 11 1 3.3042 3.4860 3.7606 12 6 2.2142 2.0889 -1.2677 13 6 3.6413 1.8548 -1.7673 14 6 4.6339 2.4897 -0.7907 15 6 6.0625 2.2233 -1.2756 16 7 6.1886 2.7006 -2.6595 17 6 7.1682 3.5603 -3.0027 18 8 7.2620 3.9465 -4.1486 19 6 8.1469 4.0416 -1.9628 20 1 7.6344 4.2488 -1.0234 21 6 9.2655 3.0030 -1.7511 22 7 10.4907 3.7222 -2.1306 23 6 11.8452 3.1646 -2.1042 24 6 10.1715 4.9684 -2.5043 25 8 10.9971 5.7833 -2.8684 26 7 8.8579 5.2378 -2.4385 27 6 5.2269 2.2225 -3.6620 28 6 3.8077 2.4886 -3.1503 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.9927 4.9115 0.6413 35 1 1.5049 1.7148 -2.0060 36 1 2.0526 3.1562 -1.1167 37 1 3.8317 0.7836 -1.8334 38 1 4.4603 3.5648 -0.7430 39 1 4.4989 2.0546 0.1995 40 1 6.2678 1.1535 -1.2380 41 1 6.7713 2.7541 -0.6400 42 1 9.3101 2.6963 -0.7060 43 1 9.1116 2.1380 -2.3963 44 1 12.0683 2.7064 -3.0677 45 1 12.5622 3.9612 -1.9059 46 1 11.9127 2.4113 -1.3194 47 1 8.4430 6.0838 -2.6684 48 1 5.3641 1.1526 -3.8190 49 1 5.3818 2.7525 -4.6019 50 1 3.0847 2.0527 -3.8397 51 1 3.6414 3.5636 -3.0803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281833486.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:42 Heat of formation + Delta-G solvation = -44.984767 kcal Electronic energy + Delta-G solvation = -31234.409349 eV Core-core repulsion = 27169.100634 eV Total energy + Delta-G solvation = -4065.308715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.51644 -40.85309 -39.01300 -37.48021 -37.23562 -35.14893 -34.24452 -33.66796 -32.16049 -30.64464 -30.26288 -28.52171 -27.89207 -25.87261 -25.00030 -24.08381 -23.68616 -22.03284 -21.67275 -21.14922 -20.09879 -18.88323 -18.58472 -18.44260 -17.44352 -17.21570 -16.65935 -16.39066 -16.17142 -15.76045 -15.73318 -15.35023 -15.22784 -15.00149 -14.78660 -14.70579 -14.49295 -14.25674 -14.20550 -13.85991 -13.54422 -13.46056 -13.22942 -13.14414 -13.00651 -12.93823 -12.73858 -12.51197 -12.23014 -12.09433 -12.00089 -11.85627 -11.58386 -11.54732 -11.47665 -11.33193 -11.13442 -11.05982 -10.40260 -10.36600 -9.65248 -9.61984 -8.46397 -7.71006 -5.26668 1.27103 1.49120 1.54471 1.58506 1.59778 1.75868 2.07423 2.59185 2.81623 3.21377 3.28632 3.35027 3.74253 3.78154 3.92141 4.09705 4.13538 4.23065 4.28528 4.43208 4.48930 4.50133 4.53032 4.61150 4.69013 4.71707 4.82747 4.85750 4.87996 4.92953 4.93978 4.95932 4.99807 5.10577 5.19383 5.30593 5.37249 5.42383 5.45972 5.56866 5.58665 5.65489 5.78235 5.85239 5.94737 6.03961 6.27799 6.36863 6.56845 7.01390 7.29329 7.38400 8.01433 8.53097 9.24677 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.003212 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.519903 B = 8715.933430 C = 9596.473553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 N -0.597 5.597 4 C -0.243 4.243 5 H 0.060 0.940 6 C -0.028 4.028 7 N -0.918 5.918 8 Si 0.932 3.068 9 H -0.275 1.275 10 H -0.311 1.311 11 H -0.268 1.268 12 C 0.152 3.848 13 C -0.087 4.087 14 C -0.112 4.112 15 C 0.105 3.895 16 N -0.595 5.595 17 C 0.503 3.497 18 O -0.577 6.577 19 C 0.101 3.899 20 H 0.142 0.858 21 C 0.109 3.891 22 N -0.635 5.635 23 C 0.116 3.884 24 C 0.693 3.307 25 O -0.633 6.633 26 N -0.719 5.719 27 C 0.119 3.881 28 C -0.119 4.119 29 H 0.023 0.977 30 H 0.027 0.973 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.244 0.756 35 H 0.014 0.986 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.139 0.861 43 H 0.097 0.903 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.113 0.887 47 H 0.432 0.568 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.308 -9.313 -2.705 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.318 5.318 4 C -0.374 4.374 5 H 0.078 0.922 6 C -0.225 4.225 7 N -0.563 5.563 8 Si 0.762 3.238 9 H -0.202 1.202 10 H -0.239 1.239 11 H -0.192 1.192 12 C 0.026 3.974 13 C -0.108 4.108 14 C -0.150 4.150 15 C -0.016 4.016 16 N -0.327 5.327 17 C 0.289 3.711 18 O -0.456 6.456 19 C -0.009 4.009 20 H 0.160 0.840 21 C -0.014 4.014 22 N -0.374 5.374 23 C -0.025 4.025 24 C 0.393 3.607 25 O -0.515 6.515 26 N -0.379 5.379 27 C -0.003 4.003 28 C -0.158 4.158 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.157 0.843 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.131 0.869 47 H 0.274 0.726 48 H 0.109 0.891 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.876 -8.695 -3.446 17.572 hybrid contribution -0.828 1.675 0.356 1.902 sum 14.048 -7.020 -3.090 16.005 Atomic orbital electron populations 1.22182 0.99924 0.99772 0.99534 1.21006 0.91760 0.86557 0.99422 1.44101 1.74996 1.10653 1.02023 1.19152 1.34107 0.91558 0.92545 0.92216 1.25524 0.97809 0.99732 0.99431 1.70159 1.32839 1.09988 1.43354 0.85809 0.78961 0.78604 0.80452 1.20166 1.23883 1.19236 1.20838 0.92326 0.98962 0.85265 1.21505 0.97076 0.99146 0.93067 1.21753 0.93484 0.99270 1.00503 1.22177 0.97744 1.01769 0.79911 1.48257 1.28489 1.44443 1.11544 1.21083 0.82127 0.78602 0.89254 1.90708 1.74301 1.58336 1.22278 1.22142 0.94190 0.87063 0.97474 0.84026 1.22587 0.79770 0.93811 1.05233 1.47212 1.09159 1.11302 1.69687 1.21639 0.78155 0.99374 1.03330 1.16217 0.82966 0.83429 0.78102 1.90900 1.52268 1.51537 1.56786 1.45000 1.05819 1.15141 1.71933 1.21587 0.87192 1.00298 0.91227 1.21838 0.96310 1.00095 0.97594 0.95785 0.95355 0.91818 0.92660 0.93364 0.94652 0.96784 0.92350 0.91201 0.95398 0.89782 0.88120 0.87739 0.84342 0.88511 0.92357 0.91602 0.86891 0.72611 0.89134 0.90822 0.90319 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.61 10.24 71.98 0.74 -4.87 16 2 C 0.14 4.99 6.39 86.38 0.55 5.54 16 3 N -0.60 -25.47 2.32 -702.00 -1.63 -27.10 16 4 C -0.24 -11.52 7.36 84.03 0.62 -10.90 16 5 H 0.06 2.82 7.93 -2.91 -0.02 2.80 16 6 C -0.03 -1.39 4.92 84.86 0.42 -0.97 16 7 N -0.92 -50.36 11.42 21.65 0.25 -50.12 16 8 Si 0.93 40.33 29.61 68.60 2.03 42.36 16 9 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.31 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 12 C 0.15 6.21 4.81 86.38 0.42 6.62 16 13 C -0.09 -2.67 2.36 -10.77 -0.03 -2.69 16 14 C -0.11 -3.29 4.96 30.67 0.15 -3.14 16 15 C 0.11 1.96 6.25 86.36 0.54 2.50 16 16 N -0.60 -13.19 2.97 -818.91 -2.43 -15.62 16 17 C 0.50 12.43 6.81 87.66 0.60 13.02 16 18 O -0.58 -19.37 15.99 -3.04 -0.05 -19.42 16 19 C 0.10 1.89 3.16 44.51 0.14 2.03 16 20 H 0.14 2.02 6.64 -2.39 -0.02 2.01 16 21 C 0.11 1.41 7.04 86.65 0.61 2.02 16 22 N -0.63 -12.34 3.36 -863.12 -2.90 -15.24 16 23 C 0.12 1.54 11.03 127.77 1.41 2.95 16 24 C 0.69 19.54 8.61 179.47 1.55 21.08 16 25 O -0.63 -23.35 17.53 -3.98 -0.07 -23.42 16 26 N -0.72 -17.73 5.64 -459.89 -2.59 -20.32 16 27 C 0.12 2.79 6.43 86.36 0.55 3.34 16 28 C -0.12 -3.29 5.36 30.67 0.16 -3.12 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.73 8.09 -2.39 -0.02 1.71 16 33 H 0.05 1.68 8.02 -2.39 -0.02 1.66 16 34 H 0.24 13.33 8.31 -92.70 -0.77 12.55 16 35 H 0.01 0.56 8.07 -2.38 -0.02 0.55 16 36 H 0.06 2.89 5.41 -2.39 -0.01 2.88 16 37 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.08 2.80 6.26 -2.39 -0.01 2.79 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.10 1.37 5.41 -2.39 -0.01 1.36 16 42 H 0.14 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.10 1.12 7.72 -2.39 -0.02 1.10 16 44 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 1.06 7.91 -2.38 -0.02 1.04 16 46 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.43 10.61 8.96 -92.71 -0.83 9.78 16 48 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.07 1.95 7.01 -2.38 -0.02 1.93 16 50 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -73.98 399.36 1.13 -72.85 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.09 Total: 22.62 kcal Atomic # 6 Polarization: 24.98 SS G_CDS: 8.43 Total: 33.41 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -9.31 Total: -128.40 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -0.12 Total: -42.85 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -73.98 1.13 -72.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281833486.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.865 kcal (2) G-P(sol) polarization free energy of solvation -73.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds