Wall clock time and date at job start Tue Mar 31 2020 22:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47839 * 110.99980 * 2 1 4 4 C 1.54902 * 104.79613 * 146.36087 * 3 2 1 5 5 C 1.55135 * 101.65548 * 322.93023 * 4 3 2 6 6 C 1.47441 * 110.99658 * 120.84219 * 2 1 3 7 7 H 1.09002 * 109.89101 * 117.17574 * 6 2 1 8 8 C 1.50704 * 109.88883 * 356.14659 * 6 2 1 9 9 O 1.21275 * 120.00108 * 307.62101 * 8 6 2 10 10 N 1.34781 * 119.99829 * 127.62321 * 8 6 2 11 11 C 1.46500 * 119.99930 * 179.72197 * 10 8 6 12 12 C 1.53776 * 113.61674 * 252.76928 * 11 10 8 13 13 C 1.53774 * 87.08132 * 220.01811 * 12 11 10 14 14 C 1.53010 * 113.61054 * 139.98100 * 13 12 11 15 15 N 1.46900 * 109.46653 * 87.50345 * 14 13 12 16 16 C 1.46907 * 110.99608 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47178 * 180.02562 * 16 15 14 18 18 O 1.21301 * 120.00134 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00427 * 180.02562 * 17 16 15 20 20 C 1.37090 * 120.00178 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00349 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99952 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99844 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00071 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47221 * 90.00121 * 24 22 20 26 26 H 1.48498 * 109.46927 * 209.99958 * 24 22 20 27 27 H 1.48502 * 109.47091 * 329.99995 * 24 22 20 28 28 C 1.53775 * 87.08265 * 25.43522 * 13 12 11 29 29 H 1.08998 * 109.47106 * 308.70790 * 1 2 3 30 30 H 1.09004 * 109.46751 * 68.70610 * 1 2 3 31 31 H 1.09001 * 109.47228 * 188.70406 * 1 2 3 32 32 H 1.08999 * 110.37514 * 265.19265 * 3 2 1 33 33 H 1.09001 * 110.37693 * 27.53286 * 3 2 1 34 34 H 1.09009 * 110.99408 * 81.02237 * 4 3 2 35 35 H 1.08999 * 110.99470 * 204.79919 * 4 3 2 36 36 H 1.09007 * 110.70377 * 277.27349 * 5 4 3 37 37 H 1.08996 * 110.70984 * 154.03601 * 5 4 3 38 38 H 0.97000 * 119.99667 * 359.97438 * 10 8 6 39 39 H 1.09000 * 112.84521 * 24.08040 * 11 10 8 40 40 H 1.08998 * 113.61529 * 334.57331 * 12 11 10 41 41 H 1.09004 * 113.61005 * 105.46919 * 12 11 10 42 42 H 1.08999 * 113.62163 * 270.88283 * 13 12 11 43 43 H 1.08999 * 109.46910 * 207.50191 * 14 13 12 44 44 H 1.08993 * 109.47093 * 327.50779 * 14 13 12 45 45 H 1.00893 * 111.00579 * 303.94908 * 15 14 13 46 46 H 1.08997 * 109.47484 * 300.00143 * 16 15 14 47 47 H 1.09003 * 109.46519 * 60.00763 * 16 15 14 48 48 H 0.97005 * 119.99366 * 359.97438 * 19 17 16 49 49 H 0.96998 * 119.99727 * 179.97438 * 23 22 20 50 50 H 1.08996 * 113.61559 * 220.01657 * 28 13 12 51 51 H 1.09006 * 113.69518 * 89.12064 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 6 1.9973 -0.7057 1.1818 7 1 2.5673 -1.5801 0.8676 8 6 0.8610 -1.1291 2.0766 9 8 0.0368 -0.3154 2.4362 10 7 0.7608 -2.4120 2.4773 11 6 -0.3405 -2.8223 3.3520 12 6 0.0956 -3.1079 4.7988 13 6 -0.8729 -4.3021 4.7717 14 6 -0.3260 -5.5505 5.4671 15 7 -0.6547 -5.4976 6.8978 16 6 -0.1446 -6.6833 7.5993 17 6 -0.5006 -6.5942 9.0609 18 8 -1.1189 -5.6373 9.4773 19 7 -0.1320 -7.5776 9.9056 20 6 -0.4555 -7.4962 11.2353 21 1 -1.0060 -6.6443 11.6060 22 6 -0.0759 -8.5105 12.1060 23 7 0.5927 -9.5479 11.6546 24 14 -0.5172 -8.3999 13.9177 25 1 -1.8385 -9.0383 14.1452 26 1 0.5159 -9.1002 14.7224 27 1 -0.5798 -6.9734 14.3258 28 6 -0.6882 -4.3165 3.2452 29 1 -0.3633 0.6426 0.8019 30 1 -0.3633 0.3732 -0.9576 31 1 -0.3634 -1.0158 0.1555 32 1 2.2148 1.7038 -1.0182 33 1 1.2890 2.0592 0.4723 34 1 4.1303 0.9281 0.2244 35 1 3.5498 2.2721 1.2635 36 1 2.3743 0.7748 2.7392 37 1 3.7999 -0.2279 2.3138 38 1 1.4198 -3.0629 2.1894 39 1 -1.2074 -2.1659 3.2773 40 1 1.1426 -3.3967 4.8903 41 1 -0.1925 -2.3279 5.5036 42 1 -1.8855 -4.0503 5.0867 43 1 -0.7748 -6.4393 5.0237 44 1 0.7563 -5.5901 5.3442 45 1 -0.3045 -4.6500 7.3183 46 1 -0.5925 -7.5798 7.1707 47 1 0.9390 -6.7311 7.4912 48 1 0.3621 -8.3431 9.5725 49 1 0.8580 -10.2557 12.2625 50 1 -1.6089 -4.5123 2.6958 51 1 0.1443 -4.9356 2.9105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281991127.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:55 Heat of formation + Delta-G solvation = -40.711894 kcal Electronic energy + Delta-G solvation = -28624.138722 eV Core-core repulsion = 24559.015293 eV Total energy + Delta-G solvation = -4065.123429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17340 -39.58976 -38.23621 -37.64680 -35.25663 -33.95121 -33.50276 -32.50151 -31.21705 -30.06179 -28.39607 -26.06010 -26.00690 -25.57412 -24.01269 -22.99930 -21.74767 -21.41534 -20.63871 -19.65754 -19.13691 -17.89228 -17.75267 -16.90358 -16.38541 -16.00790 -15.62822 -15.61596 -15.35719 -15.27775 -14.58479 -14.48275 -14.24864 -13.99345 -13.76632 -13.53958 -13.35026 -13.21008 -12.98604 -12.72516 -12.47690 -12.34697 -12.22003 -11.94177 -11.82664 -11.68961 -11.58976 -11.56242 -11.51386 -11.30755 -11.18213 -11.02459 -10.73875 -10.44628 -10.39184 -10.25656 -10.20688 -9.50557 -9.35127 -8.68577 -8.45449 -8.04697 -7.95266 -6.41510 -3.82231 2.13786 2.78332 3.18246 3.26732 3.32736 3.56545 3.91481 4.00873 4.06876 4.17120 4.22544 4.25617 4.37584 4.51519 4.61095 4.63575 4.74941 4.80118 4.94943 5.05514 5.13510 5.20242 5.23956 5.27845 5.30737 5.38553 5.39565 5.41228 5.42024 5.53336 5.54963 5.62603 5.63307 5.69930 5.74008 5.78963 5.83917 5.94876 5.99383 6.11750 6.26922 6.34088 6.37193 6.47531 7.11772 7.24370 7.55560 7.68719 7.82988 8.06910 8.61869 9.18341 9.54808 10.06494 10.76267 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027825 B = 0.001502 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.033726 B =18642.084279 C =19014.662431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.510 5.510 3 C 0.037 3.963 4 C -0.127 4.127 5 C -0.129 4.129 6 C 0.052 3.948 7 H 0.101 0.899 8 C 0.503 3.497 9 O -0.537 6.537 10 N -0.715 5.715 11 C 0.120 3.880 12 C -0.150 4.150 13 C -0.102 4.102 14 C 0.072 3.928 15 N -0.669 5.669 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.138 4.138 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.401 0.599 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.026 0.974 45 H 0.349 0.651 46 H 0.085 0.915 47 H 0.042 0.958 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.076 0.924 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.549 14.803 -26.435 30.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.235 5.235 3 C -0.090 4.090 4 C -0.165 4.165 5 C -0.168 4.168 6 C -0.060 4.060 7 H 0.119 0.881 8 C 0.289 3.711 9 O -0.414 6.414 10 N -0.365 5.365 11 C 0.016 3.984 12 C -0.188 4.188 13 C -0.122 4.122 14 C -0.058 4.058 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.177 4.177 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.236 0.764 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.090 0.910 44 H 0.044 0.956 45 H 0.168 0.832 46 H 0.104 0.896 47 H 0.060 0.940 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.094 0.906 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.116 15.348 -26.324 30.898 hybrid contribution 1.106 -0.473 1.315 1.783 sum 6.223 14.876 -25.008 29.756 Atomic orbital electron populations 1.22948 0.86889 1.02421 1.02096 1.64057 1.09173 1.14905 1.35324 1.23167 0.95768 0.89273 1.00807 1.22701 0.97712 0.99470 0.96598 1.22753 0.99101 0.96493 0.98453 1.22652 0.94238 0.99369 0.89726 0.88075 1.21085 0.86891 0.82474 0.80630 1.90682 1.42810 1.51479 1.56402 1.46157 1.29562 1.10125 1.50684 1.22573 0.90560 0.95713 0.89603 1.23560 0.99894 0.98759 0.96628 1.22384 1.00723 0.94953 0.94095 1.21912 0.97143 0.97599 0.89143 1.60064 1.64025 1.04912 1.01085 1.21671 0.97531 0.94632 0.94382 1.19835 0.85348 0.85231 0.87005 1.90526 1.44382 1.33839 1.77956 1.41864 1.50004 1.20108 1.08114 1.19713 1.33546 1.06771 0.82892 0.87920 1.25261 0.96842 0.95219 1.00623 1.69615 1.38733 1.09565 1.36454 0.85850 0.78051 0.78572 0.81772 1.20382 1.20950 1.19440 1.23362 1.02383 0.95025 0.96951 0.91666 0.91716 0.91968 0.89714 0.92895 0.90288 0.90291 0.90337 0.89918 0.76419 0.86773 0.89900 0.90741 0.87676 0.90967 0.95568 0.83167 0.89638 0.94017 0.77475 0.91897 0.90571 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 8.19 60.07 0.49 0.53 16 2 N -0.51 -4.15 5.44 -232.95 -1.27 -5.41 16 3 C 0.04 0.25 6.73 -2.30 -0.02 0.24 16 4 C -0.13 -0.70 7.08 -24.60 -0.17 -0.87 16 5 C -0.13 -0.85 6.45 -24.91 -0.16 -1.01 16 6 C 0.05 0.38 3.84 -67.87 -0.26 0.12 16 7 H 0.10 0.57 7.95 -51.93 -0.41 0.15 16 8 C 0.50 4.67 4.93 -10.98 -0.05 4.61 16 9 O -0.54 -6.87 13.37 5.56 0.07 -6.79 16 10 N -0.71 -5.32 5.36 -53.02 -0.28 -5.60 16 11 C 0.12 1.03 4.24 -67.12 -0.28 0.75 16 12 C -0.15 -1.42 7.43 -25.92 -0.19 -1.62 16 13 C -0.10 -1.01 3.90 -89.81 -0.35 -1.36 16 14 C 0.07 0.83 5.52 -3.82 -0.02 0.81 16 15 N -0.67 -10.74 6.12 -115.05 -0.70 -11.44 16 16 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 17 C 0.44 10.51 7.82 -10.99 -0.09 10.42 16 18 O -0.58 -16.05 15.78 5.54 0.09 -15.96 16 19 N -0.56 -14.41 5.29 -10.96 -0.06 -14.46 16 20 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 23 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C -0.14 -1.03 7.39 -25.92 -0.19 -1.22 16 29 H 0.07 0.71 5.80 -51.93 -0.30 0.41 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.59 6.96 -51.93 -0.36 0.22 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.40 7.63 -51.93 -0.40 0.00 16 34 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.66 7.70 -51.92 -0.40 0.26 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.40 1.99 8.59 -40.82 -0.35 1.64 16 39 H 0.11 1.18 7.47 -51.93 -0.39 0.79 16 40 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.03 0.28 7.84 -51.93 -0.41 -0.13 16 45 H 0.35 5.86 8.43 -39.30 -0.33 5.53 16 46 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 49 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 51 H 0.09 0.54 8.08 -51.93 -0.42 0.12 16 LS Contribution 407.43 15.07 6.14 6.14 Total: -1.00 -33.27 407.43 -10.54 -43.82 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -8.66 Total: 13.27 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.57 Total: 4.18 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -1.59 Total: -60.79 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.16 Total: -22.75 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.27 -10.54 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281991127.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.105 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds