Wall clock time and date at job start Tue Mar 31 2020 22:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47839 * 110.99980 * 2 1 4 4 C 1.54902 * 104.79613 * 146.36087 * 3 2 1 5 5 C 1.55135 * 101.65548 * 322.93023 * 4 3 2 6 6 C 1.47441 * 110.99658 * 120.84219 * 2 1 3 7 7 H 1.09002 * 109.89101 * 117.17574 * 6 2 1 8 8 C 1.50704 * 109.88883 * 356.14659 * 6 2 1 9 9 O 1.21275 * 120.00108 * 307.62101 * 8 6 2 10 10 N 1.34781 * 119.99829 * 127.62321 * 8 6 2 11 11 C 1.46500 * 119.99930 * 179.72197 * 10 8 6 12 12 C 1.53776 * 113.61674 * 252.76928 * 11 10 8 13 13 C 1.53774 * 87.08132 * 220.01811 * 12 11 10 14 14 C 1.53010 * 113.61054 * 139.98100 * 13 12 11 15 15 N 1.46900 * 109.46653 * 87.50345 * 14 13 12 16 16 C 1.46907 * 110.99608 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47178 * 180.02562 * 16 15 14 18 18 O 1.21301 * 120.00134 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00427 * 180.02562 * 17 16 15 20 20 C 1.37090 * 120.00178 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00349 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99952 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99844 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00071 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47221 * 90.00121 * 24 22 20 26 26 H 1.48498 * 109.46927 * 209.99958 * 24 22 20 27 27 H 1.48502 * 109.47091 * 329.99995 * 24 22 20 28 28 C 1.53775 * 87.08265 * 25.43522 * 13 12 11 29 29 H 1.08998 * 109.47106 * 308.70790 * 1 2 3 30 30 H 1.09004 * 109.46751 * 68.70610 * 1 2 3 31 31 H 1.09001 * 109.47228 * 188.70406 * 1 2 3 32 32 H 1.08999 * 110.37514 * 265.19265 * 3 2 1 33 33 H 1.09001 * 110.37693 * 27.53286 * 3 2 1 34 34 H 1.09009 * 110.99408 * 81.02237 * 4 3 2 35 35 H 1.08999 * 110.99470 * 204.79919 * 4 3 2 36 36 H 1.09007 * 110.70377 * 277.27349 * 5 4 3 37 37 H 1.08996 * 110.70984 * 154.03601 * 5 4 3 38 38 H 0.97000 * 119.99667 * 359.97438 * 10 8 6 39 39 H 1.09000 * 112.84521 * 24.08040 * 11 10 8 40 40 H 1.08998 * 113.61529 * 334.57331 * 12 11 10 41 41 H 1.09004 * 113.61005 * 105.46919 * 12 11 10 42 42 H 1.08999 * 113.62163 * 270.88283 * 13 12 11 43 43 H 1.08999 * 109.46910 * 207.50191 * 14 13 12 44 44 H 1.08993 * 109.47093 * 327.50779 * 14 13 12 45 45 H 1.00893 * 111.00579 * 303.94908 * 15 14 13 46 46 H 1.08997 * 109.47484 * 300.00143 * 16 15 14 47 47 H 1.09003 * 109.46519 * 60.00763 * 16 15 14 48 48 H 0.97005 * 119.99366 * 359.97438 * 19 17 16 49 49 H 0.96998 * 119.99727 * 179.97438 * 23 22 20 50 50 H 1.08996 * 113.61559 * 220.01657 * 28 13 12 51 51 H 1.09006 * 113.69518 * 89.12064 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 6 1.9973 -0.7057 1.1818 7 1 2.5673 -1.5801 0.8676 8 6 0.8610 -1.1291 2.0766 9 8 0.0368 -0.3154 2.4362 10 7 0.7608 -2.4120 2.4773 11 6 -0.3405 -2.8223 3.3520 12 6 0.0956 -3.1079 4.7988 13 6 -0.8729 -4.3021 4.7717 14 6 -0.3260 -5.5505 5.4671 15 7 -0.6547 -5.4976 6.8978 16 6 -0.1446 -6.6833 7.5993 17 6 -0.5006 -6.5942 9.0609 18 8 -1.1189 -5.6373 9.4773 19 7 -0.1320 -7.5776 9.9056 20 6 -0.4555 -7.4962 11.2353 21 1 -1.0060 -6.6443 11.6060 22 6 -0.0759 -8.5105 12.1060 23 7 0.5927 -9.5479 11.6546 24 14 -0.5172 -8.3999 13.9177 25 1 -1.8385 -9.0383 14.1452 26 1 0.5159 -9.1002 14.7224 27 1 -0.5798 -6.9734 14.3258 28 6 -0.6882 -4.3165 3.2452 29 1 -0.3633 0.6426 0.8019 30 1 -0.3633 0.3732 -0.9576 31 1 -0.3634 -1.0158 0.1555 32 1 2.2148 1.7038 -1.0182 33 1 1.2890 2.0592 0.4723 34 1 4.1303 0.9281 0.2244 35 1 3.5498 2.2721 1.2635 36 1 2.3743 0.7748 2.7392 37 1 3.7999 -0.2279 2.3138 38 1 1.4198 -3.0629 2.1894 39 1 -1.2074 -2.1659 3.2773 40 1 1.1426 -3.3967 4.8903 41 1 -0.1925 -2.3279 5.5036 42 1 -1.8855 -4.0503 5.0867 43 1 -0.7748 -6.4393 5.0237 44 1 0.7563 -5.5901 5.3442 45 1 -0.3045 -4.6500 7.3183 46 1 -0.5925 -7.5798 7.1707 47 1 0.9390 -6.7311 7.4912 48 1 0.3621 -8.3431 9.5725 49 1 0.8580 -10.2557 12.2625 50 1 -1.6089 -4.5123 2.6958 51 1 0.1443 -4.9356 2.9105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281991127.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:54 Heat of formation + Delta-G solvation = -67.779377 kcal Electronic energy + Delta-G solvation = -28625.312456 eV Core-core repulsion = 24559.015293 eV Total energy + Delta-G solvation = -4066.297163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86025 -40.41836 -39.99041 -38.38371 -36.53312 -35.78797 -34.45849 -33.26454 -33.07578 -30.71778 -29.57478 -27.27711 -26.68744 -26.61531 -25.40093 -23.93631 -22.26314 -22.19716 -21.36168 -21.10654 -20.26522 -19.88184 -18.42283 -18.02508 -17.35697 -17.03371 -16.82074 -16.51395 -16.28383 -16.19655 -16.03409 -15.85063 -15.36989 -15.13739 -14.92959 -14.62323 -14.49398 -14.10623 -13.78051 -13.61993 -13.48472 -13.39818 -13.35651 -13.00994 -12.97357 -12.78240 -12.66322 -12.51074 -12.42843 -12.29272 -12.13361 -12.08487 -12.05579 -11.75504 -11.54446 -11.51650 -11.24271 -10.98142 -10.35232 -10.06882 -10.02181 -9.34717 -9.29694 -8.47444 -5.96252 1.37635 1.41491 1.43412 1.54159 2.04705 2.13156 2.29054 2.93778 2.97142 3.19844 3.45468 3.50182 3.53287 3.67343 3.71819 3.79418 3.88767 3.92467 4.12774 4.27865 4.32967 4.35721 4.38178 4.50062 4.50662 4.54441 4.57667 4.62983 4.76592 4.77436 4.78879 4.85662 4.87103 4.89073 4.95892 4.99155 5.04817 5.05781 5.15044 5.23912 5.35670 5.40309 5.61986 5.77071 5.83962 5.90679 6.13721 6.42372 6.50991 6.59803 7.12029 7.18311 7.55606 8.11367 8.69878 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027825 B = 0.001502 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.033726 B =18642.084279 C =19014.662431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.512 5.512 3 C 0.032 3.968 4 C -0.120 4.120 5 C -0.130 4.130 6 C 0.051 3.949 7 H 0.127 0.873 8 C 0.500 3.500 9 O -0.579 6.579 10 N -0.702 5.702 11 C 0.122 3.878 12 C -0.148 4.148 13 C -0.103 4.103 14 C 0.075 3.925 15 N -0.687 5.687 16 C 0.066 3.934 17 C 0.435 3.565 18 O -0.626 6.626 19 N -0.572 5.572 20 C -0.337 4.337 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.274 1.274 28 C -0.117 4.117 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.038 0.962 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.417 0.583 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.341 0.659 46 H 0.105 0.895 47 H 0.067 0.933 48 H 0.397 0.603 49 H 0.278 0.722 50 H 0.082 0.918 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 13.589 -27.968 32.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.237 5.237 3 C -0.095 4.095 4 C -0.158 4.158 5 C -0.168 4.168 6 C -0.060 4.060 7 H 0.145 0.855 8 C 0.287 3.713 9 O -0.459 6.459 10 N -0.353 5.353 11 C 0.017 3.983 12 C -0.187 4.187 13 C -0.123 4.123 14 C -0.054 4.054 15 N -0.319 5.319 16 C -0.067 4.067 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.156 4.156 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.056 0.944 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.255 0.745 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.063 0.937 45 H 0.160 0.840 46 H 0.123 0.877 47 H 0.085 0.915 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.101 0.899 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.974 14.086 -27.898 32.021 hybrid contribution 0.524 -0.060 1.762 1.840 sum 7.498 14.026 -26.135 30.594 Atomic orbital electron populations 1.22804 0.87731 1.01413 1.01624 1.64151 1.08356 1.15666 1.35544 1.23262 0.96135 0.88409 1.01741 1.22712 0.97309 0.99686 0.96067 1.22770 0.99326 0.96671 0.98063 1.22824 0.93606 1.00365 0.89209 0.85495 1.21513 0.86874 0.82502 0.80444 1.90678 1.44456 1.52712 1.58019 1.46036 1.29410 1.09994 1.49840 1.22377 0.90219 0.96358 0.89395 1.23553 1.00370 0.98081 0.96676 1.22290 0.99678 0.94382 0.95908 1.22011 0.98446 0.98615 0.86308 1.60077 1.64673 1.03893 1.03261 1.21535 0.99168 0.96121 0.89854 1.20973 0.83610 0.83763 0.89378 1.90494 1.45984 1.35318 1.79439 1.41927 1.50497 1.20831 1.07714 1.19672 1.35257 1.06995 0.84707 0.90463 1.26028 0.96189 0.94478 1.04438 1.69669 1.38586 1.09791 1.37927 0.84929 0.78297 0.78318 0.76786 1.19661 1.19387 1.19907 1.23274 1.03588 0.93920 0.94792 0.94128 0.90760 0.92660 0.88416 0.94403 0.88678 0.89523 0.92813 0.87899 0.74543 0.89054 0.88808 0.92979 0.89560 0.89991 0.93669 0.84041 0.87700 0.91500 0.76901 0.91257 0.89889 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 8.19 127.69 1.05 1.27 16 2 N -0.51 -7.81 5.44 -890.92 -4.85 -12.66 16 3 C 0.03 0.41 6.73 86.77 0.58 0.99 16 4 C -0.12 -1.11 7.08 31.98 0.23 -0.88 16 5 C -0.13 -1.53 6.45 31.77 0.20 -1.33 16 6 C 0.05 0.68 3.84 44.51 0.17 0.85 16 7 H 0.13 1.02 7.95 -2.39 -0.02 1.00 16 8 C 0.50 9.08 4.93 87.66 0.43 9.51 16 9 O -0.58 -15.53 13.37 -3.01 -0.04 -15.57 16 10 N -0.70 -9.42 5.36 -440.04 -2.36 -11.78 16 11 C 0.12 2.01 4.24 45.52 0.19 2.20 16 12 C -0.15 -2.73 7.43 31.12 0.23 -2.50 16 13 C -0.10 -1.91 3.90 -10.27 -0.04 -1.95 16 14 C 0.07 1.56 5.52 86.31 0.48 2.03 16 15 N -0.69 -21.39 6.12 -517.91 -3.17 -24.56 16 16 C 0.07 2.22 6.17 85.56 0.53 2.74 16 17 C 0.44 20.93 7.82 87.66 0.69 21.61 16 18 O -0.63 -35.40 15.78 -3.09 -0.05 -35.45 16 19 N -0.57 -29.56 5.29 -306.98 -1.62 -31.18 16 20 C -0.34 -19.33 9.68 84.04 0.81 -18.51 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 23 N -0.92 -49.47 13.05 21.66 0.28 -49.18 16 24 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 C -0.12 -1.47 7.39 31.12 0.23 -1.24 16 29 H 0.04 0.94 5.80 -2.39 -0.01 0.93 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.05 1.05 6.96 -2.39 -0.02 1.03 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 0.59 7.63 -2.39 -0.02 0.57 16 34 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.91 7.70 -2.38 -0.02 0.89 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.42 2.92 8.59 -92.71 -0.80 2.12 16 39 H 0.09 1.98 7.47 -2.39 -0.02 1.96 16 40 H 0.09 1.53 7.90 -2.39 -0.02 1.51 16 41 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 0.80 7.84 -2.39 -0.02 0.78 16 45 H 0.34 11.46 8.43 -89.70 -0.76 10.71 16 46 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 47 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.40 19.30 7.90 -92.70 -0.73 18.57 16 49 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 50 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.11 0.91 8.08 -2.38 -0.02 0.89 16 Total: -1.00 -74.35 407.43 -4.86 -79.22 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -1.33 Total: 41.38 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 6.25 Total: 14.65 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -11.72 Total: -129.36 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.09 Total: -51.02 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -74.35 -4.86 -79.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281991127.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.436 kcal (2) G-P(sol) polarization free energy of solvation -74.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds