Wall clock time and date at job start Tue Mar 31 2020 22:28:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.47842 * 110.99836 * 2 1
4 4 C 1.54911 * 104.79564 * 146.36258 * 3 2 1
5 5 C 1.55144 * 101.65329 * 322.93095 * 4 3 2
6 6 C 1.47439 * 110.99644 * 120.84232 * 2 1 3
7 7 H 1.09004 * 109.88928 * 117.18076 * 6 2 1
8 8 C 1.50699 * 109.89153 * 356.15019 * 6 2 1
9 9 O 1.21285 * 119.99790 * 307.61548 * 8 6 2
10 10 N 1.34774 * 120.00226 * 127.62565 * 8 6 2
11 11 C 1.46498 * 120.00376 * 180.02562 * 10 8 6
12 12 C 1.53001 * 109.47650 * 179.97438 * 11 10 8
13 13 H 1.09002 * 112.84416 * 316.19626 * 12 11 10
14 14 C 1.53785 * 113.68782 * 87.46103 * 12 11 10
15 15 C 1.53784 * 87.07385 * 139.99539 * 14 12 11
16 16 H 1.08999 * 113.68865 * 89.13326 * 15 14 12
17 17 N 1.46906 * 113.60905 * 220.01554 * 15 14 12
18 18 C 1.46897 * 110.99949 * 252.49842 * 17 15 14
19 19 C 1.50706 * 109.47077 * 180.02562 * 18 17 15
20 20 O 1.21295 * 119.99542 * 359.97438 * 19 18 17
21 21 N 1.34769 * 119.99912 * 180.02562 * 19 18 17
22 22 C 1.37109 * 119.99902 * 180.02562 * 21 19 18
23 23 H 1.07998 * 119.99772 * 359.97438 * 22 21 19
24 24 C 1.38945 * 119.99943 * 179.97438 * 22 21 19
25 25 N 1.31411 * 119.99957 * 179.97438 * 24 22 21
26 26 Si 1.86801 * 120.00343 * 0.02562 * 24 22 21
27 27 H 1.48502 * 109.46867 * 270.00020 * 26 24 22
28 28 H 1.48503 * 109.46791 * 29.99797 * 26 24 22
29 29 H 1.48489 * 109.47219 * 150.00001 * 26 24 22
30 30 C 1.53772 * 113.61526 * 184.99890 * 12 11 10
31 31 H 1.09003 * 109.47381 * 308.70701 * 1 2 3
32 32 H 1.09004 * 109.46869 * 68.70895 * 1 2 3
33 33 H 1.08999 * 109.46927 * 188.70783 * 1 2 3
34 34 H 1.08992 * 110.37722 * 265.18793 * 3 2 1
35 35 H 1.08998 * 110.37810 * 27.42253 * 3 2 1
36 36 H 1.08999 * 110.99036 * 81.01686 * 4 3 2
37 37 H 1.09000 * 110.99195 * 204.84341 * 4 3 2
38 38 H 1.09002 * 110.70084 * 277.27584 * 5 4 3
39 39 H 1.08994 * 110.70735 * 154.03810 * 5 4 3
40 40 H 0.97005 * 119.99876 * 359.97438 * 10 8 6
41 41 H 1.09009 * 109.46966 * 59.99253 * 11 10 8
42 42 H 1.08995 * 109.46965 * 299.99815 * 11 10 8
43 43 H 1.08994 * 113.61353 * 25.45011 * 14 12 11
44 44 H 1.08993 * 113.61213 * 254.54228 * 14 12 11
45 45 H 1.00899 * 110.99404 * 128.55175 * 17 15 14
46 46 H 1.09001 * 109.47343 * 60.00606 * 18 17 15
47 47 H 1.08998 * 109.47376 * 300.00550 * 18 17 15
48 48 H 0.96999 * 120.00438 * 359.97438 * 21 19 18
49 49 H 0.97001 * 120.00238 * 179.97438 * 25 24 22
50 50 H 1.09005 * 113.61511 * 105.38818 * 30 12 11
51 51 H 1.08993 * 113.61867 * 334.48554 * 30 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9988 1.3802 0.0000
4 6 3.3047 1.3027 0.8297
5 6 2.9159 0.2821 1.9315
6 6 1.9973 -0.7057 1.1818
7 1 2.5673 -1.5801 0.8676
8 6 0.8610 -1.1291 2.0766
9 8 0.0368 -0.3154 2.4362
10 7 0.7609 -2.4120 2.4773
11 6 -0.3440 -2.8238 3.3466
12 6 -0.2248 -4.3188 3.6497
13 1 0.0217 -4.9109 2.7684
14 6 0.6572 -4.6334 4.8697
15 6 -0.3756 -5.7111 5.2394
16 1 -0.1715 -6.6846 4.7936
17 7 -0.6533 -5.7903 6.6798
18 6 -0.0587 -6.9995 7.2649
19 6 -0.3644 -7.0464 8.7398
20 8 -1.0133 -6.1595 9.2532
21 7 0.0842 -8.0733 9.4886
22 6 -0.1944 -8.1162 10.8304
23 1 -0.7729 -7.3270 11.2873
24 6 0.2676 -9.1752 11.6023
25 7 0.0011 -9.2161 12.8884
26 14 1.2689 -10.5399 10.8121
27 1 0.3567 -11.6103 10.3351
28 1 2.0325 -9.9916 9.6626
29 1 2.2131 -11.1027 11.8104
30 6 -1.4065 -4.8796 4.4581
31 1 -0.3634 0.6426 0.8019
32 1 -0.3633 0.3732 -0.9576
33 1 -0.3633 -1.0158 0.1556
34 1 2.2148 1.7038 -1.0181
35 1 1.2881 2.0596 0.4706
36 1 4.1302 0.9281 0.2244
37 1 3.5494 2.2720 1.2641
38 1 2.3743 0.7747 2.7392
39 1 3.8000 -0.2279 2.3138
40 1 1.4200 -3.0629 2.1894
41 1 -1.2924 -2.6295 2.8455
42 1 -0.3031 -2.2595 4.2782
43 1 0.7134 -3.8172 5.5898
44 1 1.6353 -5.0372 4.6087
45 1 -1.6455 -5.7521 6.8593
46 1 1.0212 -6.9811 7.1177
47 1 -0.4766 -7.8813 6.7793
48 1 0.6034 -8.7823 9.0782
49 1 0.3233 -9.9555 13.4273
50 1 -2.0944 -5.4823 3.8650
51 1 -1.9144 -4.1308 5.0658
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001316614415.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:28:35
Heat of formation + Delta-G solvation = -33.149888 kcal
Electronic energy + Delta-G solvation = -28633.915730 eV
Core-core repulsion = 24569.120214 eV
Total energy + Delta-G solvation = -4064.795516 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.08461 -39.62919 -38.34108 -37.88552 -35.20333 -34.12240 -33.33785 -32.50464
-31.65808 -30.34531 -28.14477 -26.50153 -25.97294 -25.79501 -23.93690 -22.71686
-21.73769 -21.56699 -20.44236 -19.67269 -19.26391 -18.30040 -17.72122 -16.93944
-16.19189 -16.04566 -15.95067 -15.51343 -15.45382 -15.25127 -14.83963 -14.52623
-14.37523 -14.09412 -13.91033 -13.81598 -13.29349 -13.14264 -12.87425 -12.60052
-12.53460 -12.48349 -12.29672 -12.14148 -11.92401 -11.78061 -11.69684 -11.62496
-11.52888 -11.28168 -11.19069 -11.03666 -10.83405 -10.60437 -10.43676 -10.28047
-9.98175 -9.58230 -9.40885 -8.68954 -8.58282 -8.21193 -8.15326 -6.31836
-3.83372 2.16720 2.77866 3.01471 3.05290 3.13851 3.57467 3.73467
4.02292 4.06971 4.10238 4.17972 4.27071 4.35531 4.50589 4.57582
4.65158 4.66850 4.81081 4.95287 4.95621 4.97969 5.05667 5.17063
5.20925 5.21505 5.29200 5.39243 5.41255 5.42203 5.51935 5.56378
5.58341 5.65122 5.69346 5.70558 5.71649 5.77469 5.86642 5.91342
6.02321 6.13271 6.27092 6.36524 6.47896 7.10875 7.15933 7.56457
7.58173 7.83643 8.13916 8.59062 8.94267 9.41690 9.82062 10.81312
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.025872 B = 0.001561 C = 0.001534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1081.991886 B =17938.432196 C =18249.275105
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.005 3.995
2 N -0.510 5.510
3 C 0.037 3.963
4 C -0.127 4.127
5 C -0.129 4.129
6 C 0.052 3.948
7 H 0.102 0.898
8 C 0.501 3.499
9 O -0.538 6.538
10 N -0.723 5.723
11 C 0.130 3.870
12 C -0.125 4.125
13 H 0.094 0.906
14 C -0.120 4.120
15 C 0.059 3.941
16 H 0.071 0.929
17 N -0.656 5.656
18 C 0.047 3.953
19 C 0.449 3.551
20 O -0.565 6.565
21 N -0.591 5.591
22 C -0.306 4.306
23 H 0.119 0.881
24 C 0.041 3.959
25 N -0.881 5.881
26 Si 0.880 3.120
27 H -0.271 1.271
28 H -0.269 1.269
29 H -0.276 1.276
30 C -0.131 4.131
31 H 0.065 0.935
32 H 0.064 0.936
33 H 0.061 0.939
34 H 0.084 0.916
35 H 0.053 0.947
36 H 0.078 0.922
37 H 0.078 0.922
38 H 0.078 0.922
39 H 0.083 0.917
40 H 0.401 0.599
41 H 0.066 0.934
42 H 0.073 0.927
43 H 0.093 0.907
44 H 0.063 0.937
45 H 0.352 0.648
46 H 0.086 0.914
47 H 0.044 0.956
48 H 0.370 0.630
49 H 0.273 0.727
50 H 0.069 0.931
51 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.433 13.410 -30.037 33.517
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 N -0.235 5.235
3 C -0.090 4.090
4 C -0.165 4.165
5 C -0.168 4.168
6 C -0.059 4.059
7 H 0.119 0.881
8 C 0.287 3.713
9 O -0.415 6.415
10 N -0.374 5.374
11 C 0.007 3.993
12 C -0.144 4.144
13 H 0.112 0.888
14 C -0.159 4.159
15 C -0.052 4.052
16 H 0.089 0.911
17 N -0.289 5.289
18 C -0.085 4.085
19 C 0.235 3.765
20 O -0.446 6.446
21 N -0.230 5.230
22 C -0.434 4.434
23 H 0.137 0.863
24 C -0.162 4.162
25 N -0.521 5.521
26 Si 0.706 3.294
27 H -0.197 1.197
28 H -0.195 1.195
29 H -0.202 1.202
30 C -0.170 4.170
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.080 0.920
34 H 0.103 0.897
35 H 0.071 0.929
36 H 0.097 0.903
37 H 0.097 0.903
38 H 0.097 0.903
39 H 0.101 0.899
40 H 0.236 0.764
41 H 0.085 0.915
42 H 0.091 0.909
43 H 0.112 0.888
44 H 0.082 0.918
45 H 0.173 0.827
46 H 0.104 0.896
47 H 0.062 0.938
48 H 0.203 0.797
49 H 0.084 0.916
50 H 0.088 0.912
51 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 6.054 14.618 -29.458 33.438
hybrid contribution 0.268 -2.025 -0.189 2.051
sum 6.321 12.593 -29.647 32.825
Atomic orbital electron populations
1.22943 0.86919 1.02385 1.02074 1.64058 1.09153 1.14913 1.35362
1.23165 0.95783 0.89265 1.00808 1.22702 0.97689 0.99481 0.96600
1.22756 0.99123 0.96486 0.98444 1.22636 0.94205 0.99363 0.89696
0.88062 1.21048 0.87010 0.82300 0.80990 1.90691 1.42899 1.51549
1.56347 1.46140 1.29936 1.10179 1.51176 1.21404 0.89394 0.94136
0.94380 1.22646 0.99170 0.94554 0.98074 0.88797 1.23196 0.97047
0.99641 0.95996 1.22987 0.97139 0.97017 0.88014 0.91084 1.60224
1.19923 1.38743 1.09985 1.21768 1.00758 0.91538 0.94480 1.19740
0.85059 0.84047 0.87661 1.90568 1.42505 1.38225 1.73350 1.42212
1.49562 1.21741 1.09522 1.19441 1.32911 1.09595 0.81486 0.86292
1.25038 0.97887 0.97842 0.95387 1.69622 1.45401 1.32137 1.04966
0.86666 0.80614 0.82637 0.79436 1.19679 1.19492 1.20156 1.23193
0.96033 0.99721 0.98050 0.91661 0.91738 0.92016 0.89745 0.92896
0.90282 0.90286 0.90329 0.89869 0.76423 0.91521 0.90878 0.88824
0.91809 0.82726 0.89572 0.93798 0.79712 0.91615 0.91233 0.88756
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.00 0.04 8.19 60.07 0.49 0.53 16
2 N -0.51 -4.15 5.44 -232.95 -1.27 -5.42 16
3 C 0.04 0.25 6.73 -2.30 -0.02 0.24 16
4 C -0.13 -0.70 7.08 -24.59 -0.17 -0.87 16
5 C -0.13 -0.85 6.45 -24.90 -0.16 -1.01 16
6 C 0.05 0.39 3.84 -67.88 -0.26 0.13 16
7 H 0.10 0.57 7.95 -51.93 -0.41 0.15 16
8 C 0.50 4.68 4.93 -10.99 -0.05 4.63 16
9 O -0.54 -6.95 13.77 5.55 0.08 -6.88 16
10 N -0.72 -5.36 5.56 -60.29 -0.33 -5.70 16
11 C 0.13 1.10 5.51 -4.04 -0.02 1.08 16
12 C -0.13 -0.93 3.75 -89.81 -0.34 -1.26 16
13 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
14 C -0.12 -1.14 7.43 -25.92 -0.19 -1.33 16
15 C 0.06 0.63 4.14 -66.90 -0.28 0.35 16
16 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16
17 N -0.66 -9.78 6.18 -107.13 -0.66 -10.45 16
18 C 0.05 0.77 6.01 -4.97 -0.03 0.74 16
19 C 0.45 10.17 7.82 -10.99 -0.09 10.08 16
20 O -0.56 -15.20 15.78 5.54 0.09 -15.12 16
21 N -0.59 -14.06 5.09 -10.96 -0.06 -14.11 16
22 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16
23 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16
24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16
25 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16
26 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16
27 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
28 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16
29 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16
30 C -0.13 -1.15 7.21 -25.93 -0.19 -1.34 16
31 H 0.07 0.71 5.81 -51.93 -0.30 0.41 16
32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
33 H 0.06 0.58 6.96 -51.93 -0.36 0.22 16
34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
35 H 0.05 0.40 7.63 -51.93 -0.40 0.00 16
36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
37 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16
38 H 0.08 0.66 7.70 -51.93 -0.40 0.26 16
39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
40 H 0.40 1.99 8.34 -40.82 -0.34 1.65 16
41 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16
42 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16
43 H 0.09 1.07 7.90 -51.93 -0.41 0.66 16
44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
45 H 0.35 5.48 8.24 -39.29 -0.32 5.15 16
46 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16
47 H 0.04 0.62 8.13 -51.93 -0.42 0.19 16
48 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16
49 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16
50 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
51 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16
LS Contribution 404.36 15.07 6.09 6.09
Total: -1.00 -34.49 404.36 -10.18 -44.67
By element:
Atomic # 1 Polarization: 21.78 SS G_CDS: -8.62 Total: 13.15 kcal
Atomic # 6 Polarization: 5.72 SS G_CDS: -1.55 Total: 4.17 kcal
Atomic # 7 Polarization: -59.12 SS G_CDS: -1.55 Total: -60.67 kcal
Atomic # 8 Polarization: -22.16 SS G_CDS: 0.16 Total: -21.99 kcal
Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -34.49 -10.18 -44.67 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001316614415.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.525 kcal
(2) G-P(sol) polarization free energy of solvation -34.494 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.969 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.674 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.150 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds