Wall clock time and date at job start Tue Mar 31 2020 22:28:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.47842 * 110.99836 * 2 1
4 4 C 1.54911 * 104.79564 * 146.36258 * 3 2 1
5 5 C 1.55144 * 101.65329 * 322.93095 * 4 3 2
6 6 C 1.47439 * 110.99644 * 120.84232 * 2 1 3
7 7 H 1.09004 * 109.88928 * 117.18076 * 6 2 1
8 8 C 1.50699 * 109.89153 * 356.15019 * 6 2 1
9 9 O 1.21285 * 119.99790 * 307.61548 * 8 6 2
10 10 N 1.34774 * 120.00226 * 127.62565 * 8 6 2
11 11 C 1.46498 * 120.00376 * 180.02562 * 10 8 6
12 12 C 1.53001 * 109.47650 * 179.97438 * 11 10 8
13 13 H 1.09002 * 112.84416 * 316.19626 * 12 11 10
14 14 C 1.53785 * 113.68782 * 87.46103 * 12 11 10
15 15 C 1.53784 * 87.07385 * 139.99539 * 14 12 11
16 16 H 1.08999 * 113.68865 * 89.13326 * 15 14 12
17 17 N 1.46906 * 113.60905 * 220.01554 * 15 14 12
18 18 C 1.46897 * 110.99949 * 252.49842 * 17 15 14
19 19 C 1.50706 * 109.47077 * 180.02562 * 18 17 15
20 20 O 1.21295 * 119.99542 * 359.97438 * 19 18 17
21 21 N 1.34769 * 119.99912 * 180.02562 * 19 18 17
22 22 C 1.37109 * 119.99902 * 180.02562 * 21 19 18
23 23 H 1.07998 * 119.99772 * 359.97438 * 22 21 19
24 24 C 1.38945 * 119.99943 * 179.97438 * 22 21 19
25 25 N 1.31411 * 119.99957 * 179.97438 * 24 22 21
26 26 Si 1.86801 * 120.00343 * 0.02562 * 24 22 21
27 27 H 1.48502 * 109.46867 * 270.00020 * 26 24 22
28 28 H 1.48503 * 109.46791 * 29.99797 * 26 24 22
29 29 H 1.48489 * 109.47219 * 150.00001 * 26 24 22
30 30 C 1.53772 * 113.61526 * 184.99890 * 12 11 10
31 31 H 1.09003 * 109.47381 * 308.70701 * 1 2 3
32 32 H 1.09004 * 109.46869 * 68.70895 * 1 2 3
33 33 H 1.08999 * 109.46927 * 188.70783 * 1 2 3
34 34 H 1.08992 * 110.37722 * 265.18793 * 3 2 1
35 35 H 1.08998 * 110.37810 * 27.42253 * 3 2 1
36 36 H 1.08999 * 110.99036 * 81.01686 * 4 3 2
37 37 H 1.09000 * 110.99195 * 204.84341 * 4 3 2
38 38 H 1.09002 * 110.70084 * 277.27584 * 5 4 3
39 39 H 1.08994 * 110.70735 * 154.03810 * 5 4 3
40 40 H 0.97005 * 119.99876 * 359.97438 * 10 8 6
41 41 H 1.09009 * 109.46966 * 59.99253 * 11 10 8
42 42 H 1.08995 * 109.46965 * 299.99815 * 11 10 8
43 43 H 1.08994 * 113.61353 * 25.45011 * 14 12 11
44 44 H 1.08993 * 113.61213 * 254.54228 * 14 12 11
45 45 H 1.00899 * 110.99404 * 128.55175 * 17 15 14
46 46 H 1.09001 * 109.47343 * 60.00606 * 18 17 15
47 47 H 1.08998 * 109.47376 * 300.00550 * 18 17 15
48 48 H 0.96999 * 120.00438 * 359.97438 * 21 19 18
49 49 H 0.97001 * 120.00238 * 179.97438 * 25 24 22
50 50 H 1.09005 * 113.61511 * 105.38818 * 30 12 11
51 51 H 1.08993 * 113.61867 * 334.48554 * 30 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9988 1.3802 0.0000
4 6 3.3047 1.3027 0.8297
5 6 2.9159 0.2821 1.9315
6 6 1.9973 -0.7057 1.1818
7 1 2.5673 -1.5801 0.8676
8 6 0.8610 -1.1291 2.0766
9 8 0.0368 -0.3154 2.4362
10 7 0.7609 -2.4120 2.4773
11 6 -0.3440 -2.8238 3.3466
12 6 -0.2248 -4.3188 3.6497
13 1 0.0217 -4.9109 2.7684
14 6 0.6572 -4.6334 4.8697
15 6 -0.3756 -5.7111 5.2394
16 1 -0.1715 -6.6846 4.7936
17 7 -0.6533 -5.7903 6.6798
18 6 -0.0587 -6.9995 7.2649
19 6 -0.3644 -7.0464 8.7398
20 8 -1.0133 -6.1595 9.2532
21 7 0.0842 -8.0733 9.4886
22 6 -0.1944 -8.1162 10.8304
23 1 -0.7729 -7.3270 11.2873
24 6 0.2676 -9.1752 11.6023
25 7 0.0011 -9.2161 12.8884
26 14 1.2689 -10.5399 10.8121
27 1 0.3567 -11.6103 10.3351
28 1 2.0325 -9.9916 9.6626
29 1 2.2131 -11.1027 11.8104
30 6 -1.4065 -4.8796 4.4581
31 1 -0.3634 0.6426 0.8019
32 1 -0.3633 0.3732 -0.9576
33 1 -0.3633 -1.0158 0.1556
34 1 2.2148 1.7038 -1.0181
35 1 1.2881 2.0596 0.4706
36 1 4.1302 0.9281 0.2244
37 1 3.5494 2.2720 1.2641
38 1 2.3743 0.7747 2.7392
39 1 3.8000 -0.2279 2.3138
40 1 1.4200 -3.0629 2.1894
41 1 -1.2924 -2.6295 2.8455
42 1 -0.3031 -2.2595 4.2782
43 1 0.7134 -3.8172 5.5898
44 1 1.6353 -5.0372 4.6087
45 1 -1.6455 -5.7521 6.8593
46 1 1.0212 -6.9811 7.1177
47 1 -0.4766 -7.8813 6.7793
48 1 0.6034 -8.7823 9.0782
49 1 0.3233 -9.9555 13.4273
50 1 -2.0944 -5.4823 3.8650
51 1 -1.9144 -4.1308 5.0658
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001316614415.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:28:34
Heat of formation + Delta-G solvation = -62.881285 kcal
Electronic energy + Delta-G solvation = -28635.204980 eV
Core-core repulsion = 24569.120214 eV
Total energy + Delta-G solvation = -4066.084766 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.76502 -40.58633 -39.93731 -38.60075 -36.26794 -35.84906 -34.52094 -33.73120
-33.07731 -30.98421 -29.15240 -27.78411 -26.62628 -26.58769 -25.56905 -23.45419
-22.35669 -22.23491 -21.34933 -21.13560 -20.46857 -19.99739 -18.37709 -17.88964
-17.42040 -17.00941 -16.78853 -16.63230 -16.48796 -16.18858 -16.04270 -15.58676
-15.41412 -15.13015 -14.94312 -14.81288 -14.55760 -14.37822 -14.01503 -13.85105
-13.61939 -13.39090 -13.30357 -13.03908 -12.93228 -12.78185 -12.51697 -12.44784
-12.40605 -12.26932 -12.07225 -12.00149 -11.83604 -11.76142 -11.60422 -11.51844
-11.15256 -11.00915 -10.42025 -10.25777 -10.13355 -9.35008 -9.28852 -8.41893
-6.03325 1.30144 1.35639 1.45009 1.45815 1.95340 2.12713 2.23012
2.76199 2.98030 3.14622 3.39956 3.46438 3.59792 3.66395 3.70277
3.87329 3.90975 3.98874 4.14544 4.16332 4.28166 4.31131 4.36667
4.43080 4.46602 4.50774 4.56560 4.58499 4.70988 4.78252 4.83575
4.86825 4.91473 4.96021 4.97485 4.99865 5.05505 5.13974 5.24416
5.28860 5.38874 5.50367 5.56346 5.77605 5.84590 5.92104 6.17541
6.41828 6.50338 6.59511 6.87369 7.18543 7.39103 7.96208 8.75864
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.025872 B = 0.001561 C = 0.001534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1081.991886 B =17938.432196 C =18249.275105
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 N -0.512 5.512
3 C 0.032 3.968
4 C -0.120 4.120
5 C -0.130 4.130
6 C 0.052 3.948
7 H 0.128 0.872
8 C 0.497 3.503
9 O -0.581 6.581
10 N -0.709 5.709
11 C 0.135 3.865
12 C -0.102 4.102
13 H 0.124 0.876
14 C -0.121 4.121
15 C 0.055 3.945
16 H 0.096 0.904
17 N -0.679 5.679
18 C 0.063 3.937
19 C 0.446 3.554
20 O -0.617 6.617
21 N -0.590 5.590
22 C -0.332 4.332
23 H 0.053 0.947
24 C -0.016 4.016
25 N -0.935 5.935
26 Si 0.967 3.033
27 H -0.256 1.256
28 H -0.230 1.230
29 H -0.275 1.275
30 C -0.131 4.131
31 H 0.040 0.960
32 H 0.074 0.926
33 H 0.055 0.945
34 H 0.098 0.902
35 H 0.037 0.963
36 H 0.095 0.905
37 H 0.086 0.914
38 H 0.052 0.948
39 H 0.103 0.897
40 H 0.417 0.583
41 H 0.059 0.941
42 H 0.047 0.953
43 H 0.065 0.935
44 H 0.082 0.918
45 H 0.344 0.656
46 H 0.112 0.888
47 H 0.079 0.921
48 H 0.390 0.610
49 H 0.279 0.721
50 H 0.086 0.914
51 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.290 10.992 -34.106 37.019
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 N -0.237 5.237
3 C -0.096 4.096
4 C -0.158 4.158
5 C -0.169 4.169
6 C -0.059 4.059
7 H 0.146 0.854
8 C 0.283 3.717
9 O -0.461 6.461
10 N -0.362 5.362
11 C 0.011 3.989
12 C -0.121 4.121
13 H 0.142 0.858
14 C -0.159 4.159
15 C -0.054 4.054
16 H 0.113 0.887
17 N -0.311 5.311
18 C -0.069 4.069
19 C 0.234 3.766
20 O -0.502 6.502
21 N -0.232 5.232
22 C -0.461 4.461
23 H 0.071 0.929
24 C -0.214 4.214
25 N -0.575 5.575
26 Si 0.787 3.213
27 H -0.180 1.180
28 H -0.153 1.153
29 H -0.200 1.200
30 C -0.170 4.170
31 H 0.058 0.942
32 H 0.093 0.907
33 H 0.074 0.926
34 H 0.116 0.884
35 H 0.056 0.944
36 H 0.114 0.886
37 H 0.105 0.895
38 H 0.071 0.929
39 H 0.121 0.879
40 H 0.255 0.745
41 H 0.078 0.922
42 H 0.065 0.935
43 H 0.084 0.916
44 H 0.100 0.900
45 H 0.163 0.837
46 H 0.130 0.870
47 H 0.097 0.903
48 H 0.226 0.774
49 H 0.089 0.911
50 H 0.105 0.895
51 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 8.943 12.187 -33.573 36.819
hybrid contribution -0.720 -1.133 1.137 1.759
sum 8.223 11.054 -32.436 35.241
Atomic orbital electron populations
1.22803 0.87748 1.01405 1.01605 1.64156 1.08348 1.15659 1.35537
1.23262 0.96136 0.88408 1.01755 1.22714 0.97309 0.99674 0.96057
1.22776 0.99351 0.96693 0.98065 1.22811 0.93542 1.00376 0.89172
0.85409 1.21500 0.87012 0.82349 0.80798 1.90685 1.44598 1.52813
1.58003 1.46026 1.29808 1.10041 1.50287 1.21252 0.89543 0.94811
0.93322 1.22541 0.97577 0.93682 0.98257 0.85770 1.23145 0.98091
0.98507 0.96190 1.23198 0.98165 0.98502 0.85557 0.88669 1.60242
1.19409 1.38479 1.13018 1.21692 1.02497 0.93608 0.89124 1.21103
0.82782 0.82333 0.90381 1.90547 1.44373 1.40040 1.75223 1.42031
1.50357 1.22985 1.07824 1.19015 1.33987 1.09021 0.84076 0.92911
1.26152 0.98751 1.00797 0.95716 1.69811 1.46828 1.33632 1.07265
0.85335 0.78687 0.77871 0.79423 1.18035 1.15320 1.20038 1.23170
0.96492 0.99325 0.97987 0.94182 0.90737 0.92648 0.88410 0.94426
0.88627 0.89541 0.92866 0.87858 0.74547 0.92240 0.93482 0.91603
0.89983 0.83690 0.87049 0.90280 0.77400 0.91128 0.89521 0.90621
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.23 8.19 127.69 1.05 1.27 16
2 N -0.51 -7.72 5.44 -890.91 -4.85 -12.57 16
3 C 0.03 0.40 6.73 86.78 0.58 0.99 16
4 C -0.12 -1.10 7.08 31.98 0.23 -0.87 16
5 C -0.13 -1.54 6.45 31.78 0.21 -1.34 16
6 C 0.05 0.69 3.84 44.51 0.17 0.86 16
7 H 0.13 1.00 7.95 -2.38 -0.02 0.98 16
8 C 0.50 9.07 4.93 87.66 0.43 9.50 16
9 O -0.58 -15.73 13.77 -3.05 -0.04 -15.77 16
10 N -0.71 -9.46 5.56 -463.06 -2.57 -12.03 16
11 C 0.13 2.18 5.51 86.38 0.48 2.66 16
12 C -0.10 -1.23 3.75 -10.27 -0.04 -1.27 16
13 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16
14 C -0.12 -1.99 7.43 31.12 0.23 -1.76 16
15 C 0.06 1.01 4.14 45.44 0.19 1.20 16
16 H 0.10 1.36 7.87 -2.39 -0.02 1.34 16
17 N -0.68 -19.31 6.18 -492.84 -3.05 -22.36 16
18 C 0.06 1.87 6.01 85.56 0.51 2.38 16
19 C 0.45 20.16 7.82 87.66 0.69 20.85 16
20 O -0.62 -34.72 15.78 -3.08 -0.05 -34.77 16
21 N -0.59 -27.81 5.09 -306.98 -1.56 -29.37 16
22 C -0.33 -19.59 10.16 84.04 0.85 -18.73 16
23 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16
24 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16
25 N -0.93 -56.57 13.96 21.66 0.30 -56.27 16
26 Si 0.97 38.41 27.74 68.60 1.90 40.31 16
27 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16
28 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16
29 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16
30 C -0.13 -2.05 7.21 31.12 0.22 -1.83 16
31 H 0.04 0.93 5.81 -2.39 -0.01 0.92 16
32 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16
33 H 0.05 1.03 6.96 -2.39 -0.02 1.01 16
34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16
35 H 0.04 0.59 7.63 -2.39 -0.02 0.57 16
36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16
37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16
38 H 0.05 0.91 7.70 -2.39 -0.02 0.89 16
39 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16
40 H 0.42 2.83 8.34 -92.70 -0.77 2.06 16
41 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16
42 H 0.05 1.02 7.85 -2.39 -0.02 1.00 16
43 H 0.07 1.48 7.90 -2.39 -0.02 1.46 16
44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
45 H 0.34 10.65 8.24 -89.69 -0.74 9.91 16
46 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16
47 H 0.08 1.84 8.13 -2.39 -0.02 1.83 16
48 H 0.39 15.02 5.76 -92.71 -0.53 14.49 16
49 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16
50 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16
51 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16
Total: -1.00 -83.39 404.36 -4.80 -88.20
By element:
Atomic # 1 Polarization: 42.28 SS G_CDS: -1.15 Total: 41.13 kcal
Atomic # 6 Polarization: 7.24 SS G_CDS: 6.27 Total: 13.50 kcal
Atomic # 7 Polarization: -120.87 SS G_CDS: -11.73 Total: -132.60 kcal
Atomic # 8 Polarization: -50.45 SS G_CDS: -0.09 Total: -50.54 kcal
Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.31 kcal
Total: -83.39 -4.80 -88.20 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001316614415.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.314 kcal
(2) G-P(sol) polarization free energy of solvation -83.391 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.077 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.881 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds