Wall clock time and date at job start Tue Mar 31 2020 22:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47904 * 111.00240 * 2 1 4 4 C 1.53987 * 107.06018 * 145.83942 * 3 2 1 5 5 C 1.54597 * 105.14181 * 358.77497 * 4 3 2 6 6 H 1.08994 * 110.72363 * 96.57825 * 5 4 3 7 7 C 1.50702 * 110.72273 * 219.68261 * 5 4 3 8 8 O 1.21285 * 120.00209 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00077 * 179.97438 * 7 5 4 10 10 C 1.46499 * 120.00417 * 180.02562 * 9 7 5 11 11 H 1.08999 * 109.49956 * 324.92490 * 10 9 7 12 12 C 1.53119 * 109.50023 * 84.99982 * 10 9 7 13 13 C 1.53124 * 109.15796 * 177.63426 * 12 10 9 14 14 C 1.53037 * 109.28148 * 302.35024 * 13 12 10 15 15 N 1.46844 * 109.52152 * 59.17731 * 14 13 12 16 16 C 1.46906 * 110.99887 * 174.16043 * 15 14 13 17 17 C 1.50706 * 109.46929 * 66.04691 * 16 15 14 18 18 O 1.21290 * 119.99857 * 359.97438 * 17 16 15 19 19 N 1.34768 * 119.99753 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00038 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99491 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00069 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00225 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99807 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47135 * 90.00196 * 24 22 20 26 26 H 1.48497 * 109.46961 * 210.00097 * 24 22 20 27 27 H 1.48496 * 109.47067 * 329.99880 * 24 22 20 28 28 C 1.46850 * 111.19991 * 298.25708 * 15 14 13 29 29 C 1.48541 * 110.99810 * 117.38910 * 2 1 3 30 30 H 1.08999 * 109.46490 * 59.88182 * 1 2 3 31 31 H 1.09003 * 109.46940 * 179.87203 * 1 2 3 32 32 H 1.08988 * 109.47411 * 299.87803 * 1 2 3 33 33 H 1.09000 * 109.91335 * 26.48422 * 3 2 1 34 34 H 1.09001 * 109.91527 * 265.19313 * 3 2 1 35 35 H 1.09003 * 110.30889 * 239.85297 * 4 3 2 36 36 H 1.09002 * 110.30892 * 117.68969 * 4 3 2 37 37 H 0.97006 * 119.99925 * 0.02562 * 9 7 5 38 38 H 1.09001 * 109.51997 * 57.73614 * 12 10 9 39 39 H 1.08999 * 109.52624 * 297.54220 * 12 10 9 40 40 H 1.08997 * 109.50392 * 182.40446 * 13 12 10 41 41 H 1.09008 * 109.53016 * 62.31007 * 13 12 10 42 42 H 1.08995 * 109.46089 * 299.16330 * 14 13 12 43 43 H 1.08993 * 109.46053 * 179.19513 * 14 13 12 44 44 H 1.08998 * 109.47121 * 186.04358 * 16 15 14 45 45 H 1.09000 * 109.47141 * 306.04556 * 16 15 14 46 46 H 0.97005 * 120.00524 * 0.02562 * 19 17 16 47 47 H 0.96994 * 120.00109 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.46314 * 181.76064 * 28 15 14 49 49 H 1.08998 * 109.46244 * 301.72632 * 28 15 14 50 50 H 1.09002 * 110.66459 * 81.84710 * 29 2 1 51 51 H 1.08996 * 110.66585 * 318.72172 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4491 -0.0929 1.3156 6 1 4.1139 -0.6531 0.6583 7 6 3.9511 -0.1300 2.7360 8 8 4.1754 0.9050 3.3272 9 7 4.1498 -1.3133 3.3499 10 6 4.6372 -1.3494 4.7309 11 1 5.3334 -0.5264 4.8927 12 6 3.4545 -1.2154 5.6941 13 6 3.9656 -1.3134 7.1342 14 6 4.6976 -2.6443 7.3211 15 7 5.8202 -2.7236 6.3779 16 6 6.6290 -3.9254 6.6219 17 6 5.8116 -5.1527 6.3104 18 8 4.6678 -5.0374 5.9237 19 7 6.3516 -6.3781 6.4616 20 6 5.6079 -7.4946 6.1787 21 1 4.5894 -7.3920 5.8344 22 6 6.1645 -8.7581 6.3351 23 7 7.4036 -8.8830 6.7545 24 14 5.1508 -10.2793 5.9504 25 1 5.3332 -10.6478 4.5234 26 1 5.5975 -11.4028 6.8127 27 1 3.7162 -9.9967 6.2093 28 6 5.3497 -2.6792 4.9875 29 6 2.0013 -0.6380 1.2313 30 1 -0.3632 0.5157 -0.8889 31 1 -0.3633 -1.0277 -0.0023 32 1 -0.3633 0.5119 0.8910 33 1 1.2758 2.0561 0.4570 34 1 2.2123 1.6966 -1.0212 35 1 3.2135 2.0431 1.6766 36 1 4.1470 1.6454 0.2024 37 1 3.9700 -2.1411 2.8772 38 1 2.7392 -2.0161 5.5062 39 1 2.9702 -0.2504 5.5443 40 1 3.1230 -1.2615 7.8237 41 1 4.6510 -0.4898 7.3345 42 1 4.0079 -3.4674 7.1348 43 1 5.0751 -2.7108 8.3414 44 1 7.5118 -3.9052 5.9830 45 1 6.9373 -3.9498 7.6671 46 1 7.2663 -6.4703 6.7712 47 1 7.7920 -9.7650 6.8640 48 1 6.2010 -2.7713 4.3129 49 1 4.6570 -3.5022 4.8121 50 1 2.0041 -1.7234 1.1318 51 1 1.4236 -0.3321 2.1035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317991245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:16 Heat of formation + Delta-G solvation = -64.237644 kcal Electronic energy + Delta-G solvation = -30213.056972 eV Core-core repulsion = 26146.913390 eV Total energy + Delta-G solvation = -4066.143582 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50659 -39.47229 -38.34949 -37.20922 -34.72160 -33.92229 -32.72785 -32.29196 -31.35205 -30.05466 -28.76875 -27.34464 -26.14556 -24.73121 -23.38009 -22.76783 -21.86381 -21.23465 -20.12720 -19.72453 -19.18520 -17.93968 -17.51296 -16.60707 -16.06173 -16.02830 -15.46953 -15.18491 -14.92263 -14.70935 -14.45866 -14.40816 -14.15907 -13.99352 -13.75168 -13.58116 -13.43748 -13.25959 -13.00827 -12.84458 -12.40422 -11.92546 -11.90868 -11.83519 -11.72590 -11.59871 -11.50126 -11.29566 -11.20017 -10.95933 -10.89233 -10.63185 -10.55955 -10.46399 -10.32471 -10.28753 -9.83151 -9.53784 -9.27574 -9.00310 -8.82454 -8.06798 -7.46676 -6.51700 -3.93395 2.54204 3.03321 3.09392 3.19747 3.24745 3.70476 3.75489 4.08928 4.21407 4.29636 4.36979 4.63901 4.84437 4.90672 4.97694 5.01240 5.04323 5.09911 5.12595 5.15809 5.20282 5.24111 5.32837 5.39787 5.50274 5.54872 5.58279 5.71237 5.75975 5.78284 5.80515 5.88044 5.91281 5.99419 6.10374 6.11199 6.18875 6.27807 6.34692 6.44204 6.48822 6.55139 6.60459 6.69524 7.29787 7.40561 7.44748 7.50001 7.94282 8.17720 8.48730 9.06230 9.42363 9.92353 10.64654 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.002478 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.031602 B =11297.955379 C =12645.506496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.521 5.521 3 C 0.034 3.966 4 C -0.118 4.118 5 C -0.115 4.115 6 H 0.110 0.890 7 C 0.523 3.477 8 O -0.541 6.541 9 N -0.719 5.719 10 C 0.151 3.849 11 H 0.089 0.911 12 C -0.126 4.126 13 C -0.109 4.109 14 C 0.040 3.960 15 N -0.509 5.509 16 C 0.042 3.958 17 C 0.405 3.595 18 O -0.595 6.595 19 N -0.554 5.554 20 C -0.303 4.303 21 H 0.103 0.897 22 C 0.025 3.975 23 N -0.897 5.897 24 Si 0.930 3.070 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.270 1.270 28 C 0.028 3.972 29 C 0.046 3.954 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.401 0.599 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.393 0.607 47 H 0.273 0.727 48 H 0.066 0.934 49 H 0.091 0.909 50 H 0.091 0.909 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 16.578 -8.663 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.094 4.094 4 C -0.156 4.156 5 C -0.137 4.137 6 H 0.128 0.872 7 C 0.308 3.692 8 O -0.418 6.418 9 N -0.369 5.369 10 C 0.046 3.954 11 H 0.107 0.893 12 C -0.164 4.164 13 C -0.147 4.147 14 C -0.088 4.088 15 N -0.233 5.233 16 C -0.090 4.090 17 C 0.191 3.809 18 O -0.483 6.483 19 N -0.189 5.189 20 C -0.433 4.433 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.537 5.537 24 Si 0.757 3.243 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.194 1.194 28 C -0.100 4.100 29 C -0.082 4.082 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.236 0.764 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.227 0.773 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.109 0.891 50 H 0.110 0.890 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.235 17.350 -8.832 20.769 hybrid contribution -0.675 -1.708 0.382 1.876 sum -7.909 15.641 -8.451 19.458 Atomic orbital electron populations 1.22534 0.87523 1.02485 1.00877 1.64765 1.08423 1.15172 1.36118 1.22932 0.95917 0.89757 1.00768 1.22358 0.97601 0.95298 1.00353 1.22238 0.97995 0.99333 0.94117 0.87199 1.20336 0.77276 0.83612 0.87962 1.90680 1.51438 1.32872 1.66811 1.46061 1.67280 1.08431 1.15167 1.20941 0.95521 0.99349 0.79547 0.89305 1.21903 0.97821 1.01609 0.95100 1.21486 0.99477 0.98040 0.95732 1.22268 0.93292 0.97708 0.95561 1.62332 1.22158 1.35522 1.03252 1.22047 0.96596 0.87484 1.02838 1.21089 0.88959 0.85273 0.85603 1.90373 1.19151 1.85859 1.52905 1.42067 1.15086 1.04749 1.57023 1.19702 0.98283 0.83321 1.42009 0.87963 1.25299 0.96162 0.99387 0.96936 1.69606 1.13204 1.25156 1.45771 0.85864 0.79787 0.80351 0.78336 1.20322 1.20826 1.19425 1.22566 1.00335 0.96852 0.90289 1.23194 0.92846 1.00389 0.91791 0.91144 0.90996 0.95237 0.93512 0.90045 0.89335 0.90459 0.76435 0.91798 0.92121 0.91671 0.91575 0.91276 0.91549 0.89248 0.89158 0.77333 0.91694 0.91543 0.89095 0.89041 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.40 60.06 0.56 0.67 16 2 N -0.52 -4.66 5.55 -238.72 -1.33 -5.98 16 3 C 0.03 0.28 6.70 -2.76 -0.02 0.26 16 4 C -0.12 -1.09 6.33 -25.38 -0.16 -1.25 16 5 C -0.11 -1.10 3.45 -89.91 -0.31 -1.41 16 6 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 7 C 0.52 6.48 7.10 -10.99 -0.08 6.40 16 8 O -0.54 -8.56 15.10 5.55 0.08 -8.47 16 9 N -0.72 -8.61 5.08 -53.73 -0.27 -8.88 16 10 C 0.15 2.11 2.61 -67.85 -0.18 1.94 16 11 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 12 C -0.13 -1.74 5.58 -26.61 -0.15 -1.88 16 13 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 14 C 0.04 0.62 5.09 -3.84 -0.02 0.60 16 15 N -0.51 -8.20 4.86 -236.11 -1.15 -9.35 16 16 C 0.04 0.72 5.86 -4.97 -0.03 0.69 16 17 C 0.40 8.82 7.20 -10.99 -0.08 8.74 16 18 O -0.60 -14.31 11.20 5.55 0.06 -14.25 16 19 N -0.55 -13.34 5.29 -10.96 -0.06 -13.40 16 20 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 21 H 0.10 2.86 7.16 -52.49 -0.38 2.49 16 22 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 23 N -0.90 -23.69 13.05 55.50 0.72 -22.97 16 24 Si 0.93 20.39 29.55 -169.99 -5.02 15.36 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 C 0.03 0.44 4.45 -3.83 -0.02 0.42 16 29 C 0.05 0.42 5.99 -1.90 -0.01 0.40 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.03 0.22 8.00 -51.94 -0.42 -0.20 16 33 H 0.05 0.37 7.73 -51.93 -0.40 -0.03 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.97 6.85 -51.93 -0.36 0.61 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.40 4.16 8.60 -40.82 -0.35 3.81 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 42 H 0.07 1.31 6.00 -51.93 -0.31 1.00 16 43 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.09 1.40 8.06 -51.93 -0.42 0.98 16 46 H 0.39 9.15 7.90 -40.82 -0.32 8.82 16 47 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 48 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 49 H 0.09 1.68 5.36 -51.93 -0.28 1.40 16 50 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.05 0.51 7.86 -51.93 -0.41 0.10 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -30.30 397.21 -10.52 -40.82 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -8.66 Total: 14.89 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.89 Total: 6.25 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -2.08 Total: -60.58 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.15 Total: -22.73 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.30 -10.52 -40.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317991245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.422 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds