Wall clock time and date at job start Tue Mar 31 2020 22:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47904 * 111.00240 * 2 1 4 4 C 1.53987 * 107.06018 * 145.83942 * 3 2 1 5 5 C 1.54597 * 105.14181 * 358.77497 * 4 3 2 6 6 H 1.08994 * 110.72363 * 96.57825 * 5 4 3 7 7 C 1.50702 * 110.72273 * 219.68261 * 5 4 3 8 8 O 1.21285 * 120.00209 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00077 * 179.97438 * 7 5 4 10 10 C 1.46499 * 120.00417 * 180.02562 * 9 7 5 11 11 H 1.08999 * 109.49956 * 324.92490 * 10 9 7 12 12 C 1.53119 * 109.50023 * 84.99982 * 10 9 7 13 13 C 1.53124 * 109.15796 * 177.63426 * 12 10 9 14 14 C 1.53037 * 109.28148 * 302.35024 * 13 12 10 15 15 N 1.46844 * 109.52152 * 59.17731 * 14 13 12 16 16 C 1.46906 * 110.99887 * 174.16043 * 15 14 13 17 17 C 1.50706 * 109.46929 * 66.04691 * 16 15 14 18 18 O 1.21290 * 119.99857 * 359.97438 * 17 16 15 19 19 N 1.34768 * 119.99753 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00038 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99491 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00069 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00225 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99807 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47135 * 90.00196 * 24 22 20 26 26 H 1.48497 * 109.46961 * 210.00097 * 24 22 20 27 27 H 1.48496 * 109.47067 * 329.99880 * 24 22 20 28 28 C 1.46850 * 111.19991 * 298.25708 * 15 14 13 29 29 C 1.48541 * 110.99810 * 117.38910 * 2 1 3 30 30 H 1.08999 * 109.46490 * 59.88182 * 1 2 3 31 31 H 1.09003 * 109.46940 * 179.87203 * 1 2 3 32 32 H 1.08988 * 109.47411 * 299.87803 * 1 2 3 33 33 H 1.09000 * 109.91335 * 26.48422 * 3 2 1 34 34 H 1.09001 * 109.91527 * 265.19313 * 3 2 1 35 35 H 1.09003 * 110.30889 * 239.85297 * 4 3 2 36 36 H 1.09002 * 110.30892 * 117.68969 * 4 3 2 37 37 H 0.97006 * 119.99925 * 0.02562 * 9 7 5 38 38 H 1.09001 * 109.51997 * 57.73614 * 12 10 9 39 39 H 1.08999 * 109.52624 * 297.54220 * 12 10 9 40 40 H 1.08997 * 109.50392 * 182.40446 * 13 12 10 41 41 H 1.09008 * 109.53016 * 62.31007 * 13 12 10 42 42 H 1.08995 * 109.46089 * 299.16330 * 14 13 12 43 43 H 1.08993 * 109.46053 * 179.19513 * 14 13 12 44 44 H 1.08998 * 109.47121 * 186.04358 * 16 15 14 45 45 H 1.09000 * 109.47141 * 306.04556 * 16 15 14 46 46 H 0.97005 * 120.00524 * 0.02562 * 19 17 16 47 47 H 0.96994 * 120.00109 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.46314 * 181.76064 * 28 15 14 49 49 H 1.08998 * 109.46244 * 301.72632 * 28 15 14 50 50 H 1.09002 * 110.66459 * 81.84710 * 29 2 1 51 51 H 1.08996 * 110.66585 * 318.72172 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4491 -0.0929 1.3156 6 1 4.1139 -0.6531 0.6583 7 6 3.9511 -0.1300 2.7360 8 8 4.1754 0.9050 3.3272 9 7 4.1498 -1.3133 3.3499 10 6 4.6372 -1.3494 4.7309 11 1 5.3334 -0.5264 4.8927 12 6 3.4545 -1.2154 5.6941 13 6 3.9656 -1.3134 7.1342 14 6 4.6976 -2.6443 7.3211 15 7 5.8202 -2.7236 6.3779 16 6 6.6290 -3.9254 6.6219 17 6 5.8116 -5.1527 6.3104 18 8 4.6678 -5.0374 5.9237 19 7 6.3516 -6.3781 6.4616 20 6 5.6079 -7.4946 6.1787 21 1 4.5894 -7.3920 5.8344 22 6 6.1645 -8.7581 6.3351 23 7 7.4036 -8.8830 6.7545 24 14 5.1508 -10.2793 5.9504 25 1 5.3332 -10.6478 4.5234 26 1 5.5975 -11.4028 6.8127 27 1 3.7162 -9.9967 6.2093 28 6 5.3497 -2.6792 4.9875 29 6 2.0013 -0.6380 1.2313 30 1 -0.3632 0.5157 -0.8889 31 1 -0.3633 -1.0277 -0.0023 32 1 -0.3633 0.5119 0.8910 33 1 1.2758 2.0561 0.4570 34 1 2.2123 1.6966 -1.0212 35 1 3.2135 2.0431 1.6766 36 1 4.1470 1.6454 0.2024 37 1 3.9700 -2.1411 2.8772 38 1 2.7392 -2.0161 5.5062 39 1 2.9702 -0.2504 5.5443 40 1 3.1230 -1.2615 7.8237 41 1 4.6510 -0.4898 7.3345 42 1 4.0079 -3.4674 7.1348 43 1 5.0751 -2.7108 8.3414 44 1 7.5118 -3.9052 5.9830 45 1 6.9373 -3.9498 7.6671 46 1 7.2663 -6.4703 6.7712 47 1 7.7920 -9.7650 6.8640 48 1 6.2010 -2.7713 4.3129 49 1 4.6570 -3.5022 4.8121 50 1 2.0041 -1.7234 1.1318 51 1 1.4236 -0.3321 2.1035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317991245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:16 Heat of formation + Delta-G solvation = -87.985200 kcal Electronic energy + Delta-G solvation = -30214.086744 eV Core-core repulsion = 26146.913390 eV Total energy + Delta-G solvation = -4067.173354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.55797 -40.84247 -39.39481 -38.56149 -36.17829 -35.54110 -33.83310 -33.30309 -33.17202 -31.05251 -29.69457 -28.84538 -26.83129 -26.51236 -24.42912 -24.09894 -22.84863 -21.98946 -21.25434 -21.13174 -20.59314 -19.79300 -18.48046 -17.77371 -17.55570 -17.00304 -16.68927 -16.39815 -16.21410 -16.00253 -15.78008 -15.64050 -15.57684 -15.11354 -14.97964 -14.73290 -14.55540 -14.26673 -14.16425 -13.84890 -13.67986 -13.47392 -13.28947 -13.00646 -12.60472 -12.53360 -12.50294 -12.43600 -12.43264 -12.26829 -12.20906 -12.13528 -11.86512 -11.79495 -11.67969 -11.51609 -11.34805 -10.94752 -10.89577 -10.10343 -9.99198 -9.50667 -9.01879 -8.46289 -5.95981 1.35782 1.40925 1.52630 1.54508 2.00421 2.03368 2.28297 2.96344 3.11209 3.20047 3.25439 3.45427 3.58106 3.74399 3.86509 3.93060 4.04461 4.16409 4.17572 4.24366 4.36802 4.40620 4.46198 4.48865 4.50190 4.53347 4.54572 4.65557 4.66655 4.72778 4.81770 4.90315 4.93032 4.96826 4.98748 5.03662 5.06143 5.14047 5.16731 5.18971 5.37065 5.40963 5.46574 5.77477 5.88831 5.95668 6.04635 6.08196 6.49951 6.58435 7.11364 7.17945 7.55189 8.09067 8.68989 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.002478 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.031602 B =11297.955379 C =12645.506496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.529 5.529 3 C 0.036 3.964 4 C -0.117 4.117 5 C -0.109 4.109 6 H 0.126 0.874 7 C 0.525 3.475 8 O -0.576 6.576 9 N -0.713 5.713 10 C 0.161 3.839 11 H 0.078 0.922 12 C -0.120 4.120 13 C -0.103 4.103 14 C 0.041 3.959 15 N -0.503 5.503 16 C 0.050 3.950 17 C 0.409 3.591 18 O -0.618 6.618 19 N -0.569 5.569 20 C -0.330 4.330 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.273 1.273 28 C 0.036 3.964 29 C 0.049 3.951 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.410 0.590 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.100 0.900 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 17.037 -9.370 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.253 5.253 3 C -0.091 4.091 4 C -0.155 4.155 5 C -0.131 4.131 6 H 0.144 0.856 7 C 0.312 3.688 8 O -0.455 6.455 9 N -0.364 5.364 10 C 0.056 3.944 11 H 0.096 0.904 12 C -0.159 4.159 13 C -0.141 4.141 14 C -0.087 4.087 15 N -0.226 5.226 16 C -0.082 4.082 17 C 0.196 3.804 18 O -0.506 6.506 19 N -0.206 5.206 20 C -0.460 4.460 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.198 1.198 28 C -0.093 4.093 29 C -0.079 4.079 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.246 0.754 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.118 0.882 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.303 17.813 -9.552 21.491 hybrid contribution -0.689 -1.752 0.596 1.975 sum -7.991 16.061 -8.956 20.050 Atomic orbital electron populations 1.22586 0.86662 1.02934 1.01344 1.64806 1.09331 1.15447 1.35674 1.22949 0.95308 0.89588 1.01276 1.22342 0.98693 0.94530 0.99947 1.22246 0.98555 1.00032 0.92230 0.85572 1.20795 0.76365 0.82880 0.88806 1.90666 1.53004 1.34017 1.67863 1.46004 1.66875 1.08991 1.14519 1.20720 0.95271 0.97738 0.80718 0.90365 1.21843 0.97477 1.01133 0.95447 1.21464 0.99972 0.96866 0.95785 1.22265 0.92633 0.97723 0.96049 1.62420 1.22258 1.34372 1.03514 1.22144 0.96426 0.85045 1.04566 1.22070 0.88914 0.85972 0.83428 1.90386 1.20565 1.86449 1.53181 1.42139 1.15159 1.04961 1.58305 1.19638 0.97914 0.84921 1.43539 0.90223 1.26020 0.97190 1.01530 0.96526 1.69668 1.14109 1.25934 1.46260 0.84971 0.78063 0.77162 0.78429 1.19657 1.19801 1.19795 1.22452 0.99896 0.96722 0.90229 1.23175 0.92207 1.00907 0.91661 0.89990 0.90612 0.95447 0.93408 0.88757 0.91291 0.89396 0.75399 0.92742 0.92100 0.90068 0.90730 0.94624 0.90382 0.87209 0.87039 0.77054 0.91333 0.91096 0.91820 0.88179 0.94146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.40 127.69 1.20 1.38 16 2 N -0.53 -8.61 5.55 -909.18 -5.05 -13.66 16 3 C 0.04 0.55 6.70 86.44 0.58 1.13 16 4 C -0.12 -2.04 6.33 31.47 0.20 -1.84 16 5 C -0.11 -1.96 3.45 -10.34 -0.04 -2.00 16 6 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 7 C 0.52 12.70 7.10 87.66 0.62 13.32 16 8 O -0.58 -18.14 15.10 -3.05 -0.05 -18.18 16 9 N -0.71 -16.71 5.08 -442.29 -2.25 -18.96 16 10 C 0.16 4.41 2.61 45.04 0.12 4.53 16 11 H 0.08 2.38 7.58 -2.39 -0.02 2.36 16 12 C -0.12 -3.26 5.58 30.68 0.17 -3.09 16 13 C -0.10 -2.64 6.09 30.65 0.19 -2.46 16 14 C 0.04 1.26 5.09 86.33 0.44 1.70 16 15 N -0.50 -15.61 4.86 -900.93 -4.38 -19.99 16 16 C 0.05 1.63 5.86 85.56 0.50 2.13 16 17 C 0.41 17.86 7.20 87.66 0.63 18.49 16 18 O -0.62 -30.27 11.20 -3.06 -0.03 -30.31 16 19 N -0.57 -27.69 5.29 -306.99 -1.62 -29.31 16 20 C -0.33 -17.94 9.68 84.04 0.81 -17.13 16 21 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 23 N -0.92 -48.45 13.05 21.66 0.28 -48.16 16 24 Si 0.99 41.75 29.55 68.60 2.03 43.78 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 C 0.04 1.10 4.45 86.32 0.38 1.48 16 29 C 0.05 0.83 5.99 86.65 0.52 1.35 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.03 0.38 8.00 -2.39 -0.02 0.36 16 33 H 0.05 0.71 7.73 -2.39 -0.02 0.69 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.50 6.85 -2.39 -0.02 1.48 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.41 8.26 8.60 -92.70 -0.80 7.46 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.04 1.35 6.00 -2.39 -0.01 1.34 16 43 H 0.08 2.20 8.06 -2.39 -0.02 2.18 16 44 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.11 3.22 8.06 -2.39 -0.02 3.20 16 46 H 0.40 18.51 7.90 -92.70 -0.73 17.78 16 47 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 48 H 0.07 2.11 8.12 -2.38 -0.02 2.09 16 49 H 0.06 2.38 5.36 -2.39 -0.01 2.37 16 50 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.04 0.77 7.86 -2.39 -0.02 0.75 16 Total: -1.00 -65.38 397.21 -4.86 -70.24 By element: Atomic # 1 Polarization: 46.32 SS G_CDS: -0.59 Total: 45.73 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 6.80 Total: 18.81 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -13.01 Total: -130.08 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.08 Total: -48.49 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -65.38 -4.86 -70.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317991245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.745 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds