Wall clock time and date at job start Tue Mar 31 2020 22:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46842 * 111.00333 * 2 1 4 4 C 1.53037 * 109.52929 * 174.16129 * 3 2 1 5 5 C 1.53113 * 109.27671 * 59.18050 * 4 3 2 6 6 C 1.53121 * 109.16378 * 302.34587 * 5 4 3 7 7 C 1.46849 * 111.00124 * 235.79306 * 2 1 3 8 8 H 1.09001 * 109.45594 * 65.82778 * 7 2 1 9 9 C 1.50702 * 109.46073 * 305.85308 * 7 2 1 10 10 O 1.21283 * 120.00262 * 339.94935 * 9 7 2 11 11 N 1.34777 * 119.99928 * 159.66841 * 9 7 2 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 7 13 13 H 1.08999 * 110.28723 * 325.70670 * 12 11 9 14 14 C 1.54260 * 110.32294 * 87.82823 * 12 11 9 15 15 C 1.54381 * 105.05770 * 118.89684 * 14 12 11 16 16 N 1.48559 * 104.59670 * 23.85733 * 15 14 12 17 17 C 1.46900 * 111.00252 * 200.95785 * 16 15 14 18 18 C 1.50701 * 109.46846 * 290.12768 * 17 16 15 19 19 O 1.21291 * 120.00135 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99745 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99858 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00343 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99842 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00036 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00072 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46862 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46794 * 120.00381 * 25 23 21 28 28 H 1.48498 * 109.47330 * 240.00551 * 25 23 21 29 29 C 1.48725 * 104.28475 * 320.57204 * 16 15 14 30 30 H 1.09006 * 109.47139 * 184.20559 * 1 2 3 31 31 H 1.09002 * 109.47335 * 304.20904 * 1 2 3 32 32 H 1.08998 * 109.47160 * 64.21204 * 1 2 3 33 33 H 1.09002 * 109.46222 * 54.14430 * 3 2 1 34 34 H 1.09004 * 109.45433 * 294.17194 * 3 2 1 35 35 H 1.09000 * 109.49978 * 299.24020 * 4 3 2 36 36 H 1.08995 * 109.53677 * 179.13969 * 4 3 2 37 37 H 1.09004 * 109.52663 * 182.44463 * 5 4 3 38 38 H 1.08996 * 109.52488 * 62.25097 * 5 4 3 39 39 H 1.08996 * 109.50293 * 297.71796 * 6 5 4 40 40 H 1.08998 * 109.50988 * 177.59212 * 6 5 4 41 41 H 0.97000 * 120.00317 * 0.28382 * 11 9 7 42 42 H 1.09002 * 110.32963 * 237.79265 * 14 12 11 43 43 H 1.08998 * 110.32190 * 0.02562 * 14 12 11 44 44 H 1.09007 * 110.41177 * 142.63561 * 15 14 12 45 45 H 1.08997 * 110.41448 * 265.07121 * 15 14 12 46 46 H 1.09008 * 109.46738 * 50.12186 * 17 16 15 47 47 H 1.08998 * 109.47195 * 170.12590 * 17 16 15 48 48 H 0.97001 * 119.99778 * 359.97438 * 20 18 17 49 49 H 0.96995 * 120.00061 * 179.97438 * 24 23 21 50 50 H 1.09002 * 110.38764 * 280.63983 * 29 16 15 51 51 H 1.09001 * 110.50564 * 158.14892 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1187 0.5370 -1.0144 6 6 3.5181 -0.8715 -1.0209 7 6 1.9952 -0.7707 -1.1338 8 1 1.7324 -0.2706 -2.0660 9 6 1.3982 -2.1544 -1.1206 10 8 0.9173 -2.5977 -0.0993 11 7 1.3936 -2.8970 -2.2453 12 6 0.8078 -4.2398 -2.2341 13 1 0.9766 -4.7177 -1.2692 14 6 -0.7026 -4.1680 -2.5395 15 6 -0.8891 -4.9864 -3.8351 16 7 0.2693 -5.9162 -3.8607 17 6 0.5214 -6.4058 -5.2226 18 6 -0.5895 -7.3368 -5.6353 19 8 -1.5012 -7.5698 -4.8701 20 7 -0.5698 -7.9104 -6.8549 21 6 -1.5800 -8.7577 -7.2302 22 1 -2.3919 -8.9653 -6.5489 23 6 -1.5600 -9.3486 -8.4876 24 7 -0.5724 -9.0957 -9.3168 25 14 -2.9362 -10.5037 -8.9988 26 1 -3.9200 -10.6216 -7.8926 27 1 -3.6118 -9.9647 -10.2064 28 1 -2.3710 -11.8426 -9.3039 29 6 1.4087 -5.0964 -3.3691 30 1 -0.3634 -1.0249 0.0754 31 1 -0.3634 0.5778 0.8499 32 1 -0.3633 0.4471 -0.9253 33 1 1.5634 1.9257 0.8330 34 1 1.7325 1.8606 -0.9377 35 1 3.7813 0.8567 1.0906 36 1 3.9104 2.3510 0.1314 37 1 5.1997 0.4714 -0.8906 38 1 3.8886 1.0355 -1.9560 39 1 3.7813 -1.3836 -0.0955 40 1 3.9098 -1.4303 -1.8709 41 1 1.7782 -2.5426 -3.0622 42 1 -1.2751 -4.6123 -1.7253 43 1 -1.0079 -3.1337 -2.6982 44 1 -1.8244 -5.5452 -3.8005 45 1 -0.8694 -4.3304 -4.7054 46 1 0.5621 -5.5612 -5.9106 47 1 1.4711 -6.9402 -5.2465 48 1 0.1592 -7.7237 -7.4669 49 1 -0.5582 -9.5085 -10.1944 50 1 1.7891 -4.4581 -4.1666 51 1 2.2014 -5.7372 -2.9830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318268823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:40 Heat of formation + Delta-G solvation = -56.835603 kcal Electronic energy + Delta-G solvation = -29672.120177 eV Core-core repulsion = 25606.297571 eV Total energy + Delta-G solvation = -4065.822606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76368 -39.30824 -38.24245 -37.34977 -34.62564 -33.90397 -33.70844 -31.95010 -31.27924 -30.61376 -28.52384 -27.23293 -26.46584 -24.50030 -24.03701 -23.26580 -21.51733 -21.14600 -20.39068 -20.03497 -19.15474 -17.88568 -17.55672 -16.77674 -16.12841 -15.82957 -15.56890 -15.47789 -15.04418 -14.78790 -14.70991 -14.54838 -14.36686 -14.05671 -13.72854 -13.55229 -13.42512 -13.32296 -13.08269 -12.71359 -12.55005 -12.24939 -12.06436 -11.95213 -11.83384 -11.67152 -11.50632 -11.31836 -11.24674 -11.21406 -11.13760 -10.99832 -10.84733 -10.65663 -10.34642 -10.23039 -9.77386 -9.51346 -9.21682 -8.67432 -8.54510 -8.06484 -7.95573 -6.42469 -3.83076 2.39775 2.75919 3.15870 3.26542 3.33917 3.55050 3.89422 4.03999 4.22068 4.31172 4.35526 4.47091 4.50118 4.66805 4.69931 4.74715 4.81681 5.03383 5.04716 5.10221 5.16816 5.17134 5.24006 5.25011 5.29852 5.32385 5.44455 5.46891 5.48963 5.62113 5.66698 5.67184 5.71913 5.75736 5.81044 5.88476 5.91573 5.98563 6.13331 6.25529 6.34508 6.43079 6.57185 6.69114 7.06505 7.13059 7.29964 7.54995 8.04632 8.05800 8.61190 9.17861 9.53733 10.05658 10.75442 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.001816 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.647065 B =15414.100330 C =15817.847791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.520 5.520 3 C 0.056 3.944 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.070 3.930 8 H 0.060 0.940 9 C 0.517 3.483 10 O -0.516 6.516 11 N -0.724 5.724 12 C 0.142 3.858 13 H 0.101 0.899 14 C -0.131 4.131 15 C 0.038 3.962 16 N -0.481 5.481 17 C 0.035 3.965 18 C 0.445 3.555 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.026 3.974 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.020 0.980 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.397 0.603 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.102 0.898 45 H 0.037 0.963 46 H 0.050 0.950 47 H 0.090 0.910 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.046 0.954 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.839 22.482 13.038 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.042 4.042 8 H 0.077 0.923 9 C 0.302 3.698 10 O -0.390 6.390 11 N -0.377 5.377 12 C 0.038 3.962 13 H 0.119 0.881 14 C -0.170 4.170 15 C -0.090 4.090 16 N -0.206 5.206 17 C -0.096 4.096 18 C 0.230 3.770 19 O -0.460 6.460 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.103 4.103 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.232 0.768 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.108 0.892 48 H 0.225 0.775 49 H 0.080 0.920 50 H 0.064 0.936 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.948 21.201 14.874 27.743 hybrid contribution -0.096 0.813 -2.634 2.758 sum 9.852 22.015 12.241 27.047 Atomic orbital electron populations 1.22605 0.86417 1.04389 1.00008 1.61645 1.08375 1.12988 1.41474 1.22149 0.95725 0.88625 1.00691 1.21621 0.94329 1.00264 0.99533 1.21579 1.00303 0.95114 0.98742 1.21556 0.91414 0.98109 1.03479 1.21613 0.96594 0.92172 0.93804 0.92271 1.20407 0.79065 0.86939 0.83370 1.90699 1.44618 1.72084 1.31642 1.46206 1.61735 1.17105 1.12641 1.21704 0.92748 0.81332 1.00466 0.88097 1.22744 0.95546 1.00006 0.98748 1.23187 0.97055 0.93356 0.95426 1.65163 1.02193 1.31549 1.21652 1.22065 0.99786 0.98577 0.89221 1.19672 0.88450 0.85485 0.83394 1.90513 1.37766 1.65281 1.52413 1.41861 1.23926 1.41214 1.13244 1.19750 1.02738 1.20739 0.99445 0.87848 1.25260 0.98248 0.98691 0.95823 1.69618 1.31590 1.44638 1.08580 0.85802 0.80528 0.79464 0.78569 1.19208 1.20813 1.20742 1.23405 0.95316 0.95465 0.96110 0.89153 0.91192 0.96167 0.90269 0.94902 0.90781 0.91304 0.91137 0.92007 0.90197 0.90877 0.76844 0.90218 0.91396 0.88012 0.94476 0.93238 0.89164 0.77538 0.91956 0.93575 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.10 60.06 0.55 0.67 16 2 N -0.52 -4.83 4.51 -236.32 -1.07 -5.90 16 3 C 0.06 0.38 5.46 -3.84 -0.02 0.36 16 4 C -0.12 -0.69 6.09 -26.65 -0.16 -0.85 16 5 C -0.12 -0.65 6.00 -26.61 -0.16 -0.81 16 6 C -0.11 -0.74 5.36 -26.65 -0.14 -0.88 16 7 C 0.07 0.59 2.24 -68.87 -0.15 0.44 16 8 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 9 C 0.52 5.60 6.26 -10.98 -0.07 5.53 16 10 O -0.52 -7.61 14.20 5.55 0.08 -7.53 16 11 N -0.72 -6.73 5.03 -52.47 -0.26 -7.00 16 12 C 0.14 1.66 3.38 -66.55 -0.22 1.44 16 13 H 0.10 1.35 7.60 -51.93 -0.39 0.95 16 14 C -0.13 -1.71 6.79 -25.35 -0.17 -1.88 16 15 C 0.04 0.59 5.80 -2.18 -0.01 0.58 16 16 N -0.48 -7.83 5.06 -231.26 -1.17 -9.00 16 17 C 0.04 0.61 5.30 -4.98 -0.03 0.59 16 18 C 0.44 10.41 7.58 -10.98 -0.08 10.33 16 19 O -0.58 -15.50 14.42 5.55 0.08 -15.42 16 20 N -0.57 -14.22 5.29 -10.96 -0.06 -14.28 16 21 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 25 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 C 0.03 0.31 6.21 -2.09 -0.01 0.29 16 30 H 0.09 1.07 5.63 -51.93 -0.29 0.78 16 31 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.40 2.69 8.36 -40.82 -0.34 2.35 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 44 H 0.10 1.93 6.91 -51.92 -0.36 1.57 16 45 H 0.04 0.55 7.82 -51.93 -0.41 0.15 16 46 H 0.05 0.77 7.88 -51.92 -0.41 0.36 16 47 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 48 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 49 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 50 H 0.05 0.46 7.60 -51.93 -0.39 0.07 16 51 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 400.17 15.07 6.03 6.03 Total: -1.00 -33.07 400.17 -10.36 -43.43 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -8.76 Total: 9.50 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.94 Total: 7.87 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -1.83 Total: -59.88 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.16 Total: -22.95 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.07 -10.36 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318268823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.407 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds