Wall clock time and date at job start Tue Mar 31 2020 22:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46842 * 111.00333 * 2 1 4 4 C 1.53037 * 109.52929 * 174.16129 * 3 2 1 5 5 C 1.53113 * 109.27671 * 59.18050 * 4 3 2 6 6 C 1.53121 * 109.16378 * 302.34587 * 5 4 3 7 7 C 1.46849 * 111.00124 * 235.79306 * 2 1 3 8 8 H 1.09001 * 109.45594 * 65.82778 * 7 2 1 9 9 C 1.50702 * 109.46073 * 305.85308 * 7 2 1 10 10 O 1.21283 * 120.00262 * 339.94935 * 9 7 2 11 11 N 1.34777 * 119.99928 * 159.66841 * 9 7 2 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 7 13 13 H 1.08999 * 110.28723 * 325.70670 * 12 11 9 14 14 C 1.54260 * 110.32294 * 87.82823 * 12 11 9 15 15 C 1.54381 * 105.05770 * 118.89684 * 14 12 11 16 16 N 1.48559 * 104.59670 * 23.85733 * 15 14 12 17 17 C 1.46900 * 111.00252 * 200.95785 * 16 15 14 18 18 C 1.50701 * 109.46846 * 290.12768 * 17 16 15 19 19 O 1.21291 * 120.00135 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99745 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99858 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00343 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99842 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00036 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00072 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46862 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46794 * 120.00381 * 25 23 21 28 28 H 1.48498 * 109.47330 * 240.00551 * 25 23 21 29 29 C 1.48725 * 104.28475 * 320.57204 * 16 15 14 30 30 H 1.09006 * 109.47139 * 184.20559 * 1 2 3 31 31 H 1.09002 * 109.47335 * 304.20904 * 1 2 3 32 32 H 1.08998 * 109.47160 * 64.21204 * 1 2 3 33 33 H 1.09002 * 109.46222 * 54.14430 * 3 2 1 34 34 H 1.09004 * 109.45433 * 294.17194 * 3 2 1 35 35 H 1.09000 * 109.49978 * 299.24020 * 4 3 2 36 36 H 1.08995 * 109.53677 * 179.13969 * 4 3 2 37 37 H 1.09004 * 109.52663 * 182.44463 * 5 4 3 38 38 H 1.08996 * 109.52488 * 62.25097 * 5 4 3 39 39 H 1.08996 * 109.50293 * 297.71796 * 6 5 4 40 40 H 1.08998 * 109.50988 * 177.59212 * 6 5 4 41 41 H 0.97000 * 120.00317 * 0.28382 * 11 9 7 42 42 H 1.09002 * 110.32963 * 237.79265 * 14 12 11 43 43 H 1.08998 * 110.32190 * 0.02562 * 14 12 11 44 44 H 1.09007 * 110.41177 * 142.63561 * 15 14 12 45 45 H 1.08997 * 110.41448 * 265.07121 * 15 14 12 46 46 H 1.09008 * 109.46738 * 50.12186 * 17 16 15 47 47 H 1.08998 * 109.47195 * 170.12590 * 17 16 15 48 48 H 0.97001 * 119.99778 * 359.97438 * 20 18 17 49 49 H 0.96995 * 120.00061 * 179.97438 * 24 23 21 50 50 H 1.09002 * 110.38764 * 280.63983 * 29 16 15 51 51 H 1.09001 * 110.50564 * 158.14892 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1187 0.5370 -1.0144 6 6 3.5181 -0.8715 -1.0209 7 6 1.9952 -0.7707 -1.1338 8 1 1.7324 -0.2706 -2.0660 9 6 1.3982 -2.1544 -1.1206 10 8 0.9173 -2.5977 -0.0993 11 7 1.3936 -2.8970 -2.2453 12 6 0.8078 -4.2398 -2.2341 13 1 0.9766 -4.7177 -1.2692 14 6 -0.7026 -4.1680 -2.5395 15 6 -0.8891 -4.9864 -3.8351 16 7 0.2693 -5.9162 -3.8607 17 6 0.5214 -6.4058 -5.2226 18 6 -0.5895 -7.3368 -5.6353 19 8 -1.5012 -7.5698 -4.8701 20 7 -0.5698 -7.9104 -6.8549 21 6 -1.5800 -8.7577 -7.2302 22 1 -2.3919 -8.9653 -6.5489 23 6 -1.5600 -9.3486 -8.4876 24 7 -0.5724 -9.0957 -9.3168 25 14 -2.9362 -10.5037 -8.9988 26 1 -3.9200 -10.6216 -7.8926 27 1 -3.6118 -9.9647 -10.2064 28 1 -2.3710 -11.8426 -9.3039 29 6 1.4087 -5.0964 -3.3691 30 1 -0.3634 -1.0249 0.0754 31 1 -0.3634 0.5778 0.8499 32 1 -0.3633 0.4471 -0.9253 33 1 1.5634 1.9257 0.8330 34 1 1.7325 1.8606 -0.9377 35 1 3.7813 0.8567 1.0906 36 1 3.9104 2.3510 0.1314 37 1 5.1997 0.4714 -0.8906 38 1 3.8886 1.0355 -1.9560 39 1 3.7813 -1.3836 -0.0955 40 1 3.9098 -1.4303 -1.8709 41 1 1.7782 -2.5426 -3.0622 42 1 -1.2751 -4.6123 -1.7253 43 1 -1.0079 -3.1337 -2.6982 44 1 -1.8244 -5.5452 -3.8005 45 1 -0.8694 -4.3304 -4.7054 46 1 0.5621 -5.5612 -5.9106 47 1 1.4711 -6.9402 -5.2465 48 1 0.1592 -7.7237 -7.4669 49 1 -0.5582 -9.5085 -10.1944 50 1 1.7891 -4.4581 -4.1666 51 1 2.2014 -5.7372 -2.9830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318268823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:39 Heat of formation + Delta-G solvation = -83.327928 kcal Electronic energy + Delta-G solvation = -29673.268970 eV Core-core repulsion = 25606.297571 eV Total energy + Delta-G solvation = -4066.971399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58592 -40.56566 -39.48881 -38.53124 -36.02693 -35.43696 -34.38233 -33.31926 -32.71759 -31.63864 -29.58425 -28.22977 -27.64794 -26.04816 -24.92583 -23.85047 -22.68611 -22.00182 -21.43878 -20.85836 -20.62490 -19.86291 -18.34697 -17.92690 -17.51668 -16.84276 -16.66863 -16.41934 -16.24367 -15.98887 -15.81153 -15.63527 -15.47440 -15.25059 -14.80862 -14.76830 -14.41808 -14.16221 -13.95755 -13.80582 -13.66056 -13.45938 -13.24246 -13.14431 -12.95421 -12.81515 -12.63212 -12.44695 -12.38998 -12.38027 -12.30695 -12.11839 -11.86678 -11.77316 -11.61451 -11.48756 -11.32842 -10.61192 -10.33876 -10.11465 -9.99883 -9.39467 -9.30045 -8.46556 -5.94640 1.36169 1.41551 1.55399 1.56979 1.94304 2.06632 2.29360 2.83437 2.96793 3.20336 3.35708 3.46996 3.67714 3.78223 3.84552 3.99302 4.04816 4.06717 4.16647 4.24666 4.29104 4.31482 4.36180 4.44552 4.45572 4.50398 4.53720 4.58754 4.66524 4.77165 4.77742 4.83018 4.94915 4.98625 5.03487 5.05398 5.06893 5.12621 5.20114 5.26111 5.41107 5.42506 5.46603 5.81496 5.89887 5.94205 6.07547 6.10313 6.55520 6.61756 7.14187 7.25412 7.57615 8.14196 8.71080 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.001816 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.647065 B =15414.100330 C =15817.847791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.541 5.541 3 C 0.055 3.945 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.105 4.105 7 C 0.074 3.926 8 H 0.080 0.920 9 C 0.516 3.484 10 O -0.561 6.561 11 N -0.708 5.708 12 C 0.152 3.848 13 H 0.082 0.918 14 C -0.122 4.122 15 C 0.042 3.958 16 N -0.510 5.510 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.034 3.966 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.414 0.586 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.077 0.923 47 H 0.114 0.886 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.078 0.922 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.823 24.313 11.787 29.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.267 5.267 3 C -0.072 4.072 4 C -0.156 4.156 5 C -0.154 4.154 6 C -0.143 4.143 7 C -0.038 4.038 8 H 0.097 0.903 9 C 0.303 3.697 10 O -0.438 6.438 11 N -0.362 5.362 12 C 0.047 3.953 13 H 0.100 0.900 14 C -0.161 4.161 15 C -0.086 4.086 16 N -0.235 5.235 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.504 6.504 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.200 1.200 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.093 4.093 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.252 0.748 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.095 0.905 47 H 0.132 0.868 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.096 0.904 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.982 23.065 13.588 29.329 hybrid contribution -0.719 0.269 -2.174 2.306 sum 11.263 23.334 11.414 28.313 Atomic orbital electron populations 1.22487 0.87006 1.02722 1.00768 1.61633 1.08114 1.14555 1.42354 1.22221 0.96401 0.87313 1.01273 1.21631 0.93580 1.01287 0.99142 1.21581 1.00749 0.93958 0.99070 1.21580 0.90278 0.99300 1.03174 1.21660 0.97312 0.90392 0.94422 0.90290 1.20935 0.78202 0.87790 0.82820 1.90690 1.46581 1.73154 1.33377 1.46002 1.61066 1.15972 1.13158 1.21404 0.91796 0.82495 0.99652 0.89975 1.22630 0.96626 0.99992 0.96859 1.23023 0.95394 0.93116 0.97097 1.65060 1.03977 1.33327 1.21105 1.21926 0.97705 0.98206 0.90396 1.20811 0.89179 0.85076 0.82184 1.90494 1.39886 1.66580 1.53401 1.41918 1.23691 1.41479 1.14143 1.19666 1.03499 1.22913 0.99989 0.90542 1.25999 1.00383 0.99590 0.95279 1.69667 1.32503 1.45027 1.08895 0.84897 0.77693 0.77861 0.78043 1.20018 1.19564 1.19610 1.23419 0.93818 0.95503 0.96609 0.91957 0.90613 0.95243 0.90081 0.93944 0.92154 0.89522 0.90098 0.90722 0.92308 0.89107 0.74810 0.91960 0.90129 0.92304 0.93335 0.90536 0.86756 0.76940 0.91328 0.90420 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.10 127.69 1.16 1.50 16 2 N -0.54 -9.46 4.51 -901.60 -4.06 -13.53 16 3 C 0.06 0.65 5.46 86.33 0.47 1.12 16 4 C -0.12 -1.11 6.09 30.64 0.19 -0.92 16 5 C -0.12 -0.92 6.00 30.67 0.18 -0.73 16 6 C -0.11 -1.21 5.36 30.65 0.16 -1.04 16 7 C 0.07 1.10 2.24 44.19 0.10 1.20 16 8 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 9 C 0.52 10.62 6.26 87.66 0.55 11.17 16 10 O -0.56 -16.80 14.20 -3.04 -0.04 -16.84 16 11 N -0.71 -11.63 5.03 -438.30 -2.21 -13.83 16 12 C 0.15 3.37 3.38 45.89 0.16 3.52 16 13 H 0.08 2.19 7.60 -2.39 -0.02 2.17 16 14 C -0.12 -3.16 6.79 31.49 0.21 -2.94 16 15 C 0.04 1.31 5.80 86.45 0.50 1.81 16 16 N -0.51 -16.02 5.06 -885.57 -4.48 -20.50 16 17 C 0.05 1.62 5.30 85.56 0.45 2.07 16 18 C 0.44 20.82 7.58 87.66 0.66 21.49 16 19 O -0.62 -34.50 14.42 -3.07 -0.04 -34.54 16 20 N -0.57 -29.24 5.29 -306.98 -1.62 -30.86 16 21 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 22 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 25 Si 0.99 43.07 29.55 68.60 2.03 45.09 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 C 0.03 0.72 6.21 86.42 0.54 1.26 16 30 H 0.06 1.52 5.63 -2.38 -0.01 1.51 16 31 H 0.08 1.24 8.09 -2.39 -0.02 1.23 16 32 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.90 8.09 -2.39 -0.02 0.89 16 34 H 0.04 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.41 4.07 8.36 -92.71 -0.78 3.30 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.08 1.86 7.95 -2.39 -0.02 1.84 16 44 H 0.06 2.35 6.91 -2.38 -0.02 2.34 16 45 H 0.05 1.39 7.82 -2.39 -0.02 1.37 16 46 H 0.08 2.14 7.88 -2.38 -0.02 2.12 16 47 H 0.11 3.25 8.13 -2.39 -0.02 3.23 16 48 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 49 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 50 H 0.08 1.19 7.60 -2.39 -0.02 1.17 16 51 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -74.85 400.17 -4.10 -78.95 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.57 Total: 33.74 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 6.62 Total: 21.27 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -12.09 Total: -127.67 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -0.09 Total: -51.38 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -74.85 -4.10 -78.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318268823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.378 kcal (2) G-P(sol) polarization free energy of solvation -74.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds