Wall clock time and date at job start Tue Mar 31 2020 21:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47414 * 2 1 4 4 C 1.34770 * 120.00147 * 266.71797 * 3 2 1 5 5 O 1.21284 * 119.99725 * 184.88451 * 4 3 2 6 6 C 1.50701 * 120.00160 * 4.88033 * 4 3 2 7 7 N 1.46504 * 109.47071 * 180.02562 * 6 4 3 8 8 C 1.34769 * 119.99730 * 180.02562 * 7 6 4 9 9 O 1.21588 * 120.00325 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00005 * 180.02562 * 8 7 6 11 11 C 1.47026 * 125.64646 * 359.69190 * 10 8 7 12 12 C 1.54313 * 107.27574 * 180.96514 * 11 10 8 13 13 C 1.55163 * 102.86099 * 22.52830 * 12 11 10 14 14 C 1.47422 * 125.65013 * 179.97438 * 10 8 7 15 15 C 1.46510 * 119.99613 * 86.71104 * 3 2 1 16 16 H 1.08997 * 110.63687 * 236.73399 * 15 3 2 17 17 C 1.55157 * 110.71602 * 113.59567 * 15 3 2 18 18 C 1.54910 * 101.58319 * 276.95813 * 17 15 3 19 19 N 1.47424 * 104.83154 * 322.99655 * 18 17 15 20 20 C 1.36933 * 125.64643 * 204.10767 * 19 18 17 21 21 H 1.08004 * 120.00175 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00256 * 0.02562 * 20 19 18 23 23 N 1.31624 * 119.99713 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00337 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47143 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47333 * 120.00199 * 24 22 20 27 27 H 1.48500 * 109.47255 * 240.00354 * 24 22 20 28 28 C 1.47020 * 108.70438 * 24.12430 * 19 18 17 29 29 H 1.09009 * 109.46779 * 299.99431 * 1 2 3 30 30 H 1.08997 * 109.47524 * 59.99492 * 1 2 3 31 31 H 1.09003 * 109.47426 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47176 * 240.00424 * 2 1 3 33 33 H 1.09004 * 109.47667 * 120.00185 * 2 1 3 34 34 H 1.08995 * 109.47036 * 300.00035 * 6 4 3 35 35 H 1.08992 * 109.46654 * 60.00593 * 6 4 3 36 36 H 0.97004 * 119.99870 * 0.02562 * 7 6 4 37 37 H 1.09000 * 109.87916 * 300.51231 * 11 10 8 38 38 H 1.09002 * 109.88149 * 61.67699 * 11 10 8 39 39 H 1.08996 * 110.92812 * 264.11155 * 12 11 10 40 40 H 1.09001 * 110.73978 * 140.85281 * 12 11 10 41 41 H 1.08997 * 111.00377 * 206.22542 * 13 12 11 42 42 H 1.09001 * 111.03527 * 82.39111 * 13 12 11 43 43 H 1.08999 * 110.36693 * 274.67378 * 14 10 8 44 44 H 1.08999 * 110.37064 * 36.99462 * 14 10 8 45 45 H 1.09003 * 111.00414 * 35.03723 * 17 15 3 46 46 H 1.09000 * 110.99923 * 158.88443 * 17 15 3 47 47 H 1.09001 * 110.36491 * 81.83130 * 18 17 15 48 48 H 1.08996 * 110.36945 * 204.15268 * 18 17 15 49 49 H 0.96996 * 119.99962 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.88497 * 239.52424 * 28 19 18 51 51 H 1.09006 * 109.88404 * 118.36148 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3060 1.9943 -1.1652 5 8 2.7935 3.1048 -1.1619 6 6 2.0220 1.2999 -2.4722 7 7 2.4213 2.1676 -3.5830 8 6 2.2587 1.7521 -4.8547 9 8 1.7811 0.6569 -5.0801 10 7 2.6264 2.5501 -5.8767 11 6 3.2090 3.8939 -5.7478 12 6 3.4439 4.4304 -7.1754 13 6 2.4511 3.5949 -8.0261 14 6 2.5058 2.2227 -7.3090 15 6 2.1939 2.0960 1.2668 16 1 1.6139 3.0188 1.2707 17 6 3.6949 2.3899 1.5277 18 6 4.1711 1.0515 2.1453 19 7 3.0417 0.5963 2.9762 20 6 3.1304 -0.2498 4.0492 21 1 2.2401 -0.5248 4.5953 22 6 4.3647 -0.7542 4.4352 23 7 5.4499 -0.4187 3.7701 24 14 4.4857 -1.9090 5.8985 25 1 3.1325 -2.1278 6.4696 26 1 5.0526 -3.2088 5.4578 27 1 5.3682 -1.3087 6.9311 28 6 1.8042 1.2008 2.4618 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.5858 0.3682 -2.5187 35 1 0.9562 1.0837 -2.5446 36 1 2.8027 3.0412 -3.4032 37 1 2.5195 4.5470 -5.2129 38 1 4.1580 3.8369 -5.2145 39 1 4.4706 4.2515 -7.4946 40 1 3.2029 5.4919 -7.2333 41 1 2.7946 3.5108 -9.0571 42 1 1.4475 4.0183 -7.9843 43 1 3.3740 1.6544 -7.6427 44 1 1.5900 1.6612 -7.4940 45 1 4.2199 2.5989 0.5955 46 1 3.8150 3.2110 2.2344 47 1 4.3815 0.3251 1.3603 48 1 5.0555 1.2117 2.7620 49 1 6.3123 -0.7714 4.0396 50 1 1.3351 1.8039 3.2393 51 1 1.1192 0.4197 2.1320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318471816.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:09 Heat of formation + Delta-G solvation = -17.913738 kcal Electronic energy + Delta-G solvation = -30545.055339 eV Core-core repulsion = 26480.920512 eV Total energy + Delta-G solvation = -4064.134827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.63263 -39.93569 -37.87832 -37.29704 -35.10249 -34.48034 -32.43253 -31.83488 -30.54692 -29.45643 -28.94058 -28.10812 -26.79640 -24.52271 -23.72234 -23.01319 -21.58573 -20.88757 -20.20142 -20.02675 -18.88509 -18.06874 -17.11269 -16.90767 -16.78095 -16.22941 -15.86326 -15.64654 -15.00334 -14.73872 -14.59379 -14.01304 -13.90799 -13.77026 -13.57931 -13.33903 -13.23406 -13.15710 -12.86654 -12.64033 -12.27442 -12.19074 -12.02115 -11.75068 -11.69485 -11.60096 -11.57726 -11.16158 -11.00504 -10.95184 -10.89507 -10.72938 -10.36069 -10.15896 -10.10609 -9.97215 -9.73090 -9.47005 -9.31883 -8.75708 -8.69232 -8.36005 -6.88090 -5.68451 -3.11493 2.30621 2.67153 3.05437 3.16138 3.37264 3.42776 3.45342 3.81344 4.19292 4.27601 4.44950 4.46811 4.51498 4.88313 4.99822 5.07122 5.22013 5.24303 5.30232 5.33471 5.35520 5.36195 5.44498 5.45411 5.48613 5.49560 5.57890 5.62795 5.71042 5.75270 5.84477 5.88797 5.96502 6.00267 6.21588 6.29228 6.33217 6.36791 6.55161 6.66474 6.72579 6.84296 6.99834 7.51222 7.57288 7.60164 7.78960 7.84102 8.23937 8.32918 8.43264 9.17813 9.78447 10.42698 11.34736 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.002309 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.266211 B =12122.486932 C =12366.186509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.089 3.911 3 N -0.583 5.583 4 C 0.509 3.491 5 O -0.543 6.543 6 C 0.120 3.880 7 N -0.731 5.731 8 C 0.725 3.275 9 O -0.591 6.591 10 N -0.638 5.638 11 C 0.096 3.904 12 C -0.130 4.130 13 C -0.135 4.135 14 C 0.125 3.875 15 C 0.135 3.865 16 H 0.076 0.924 17 C -0.152 4.152 18 C 0.155 3.845 19 N -0.602 5.602 20 C -0.224 4.224 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.122 3.878 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.407 0.593 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.010 0.990 48 H 0.105 0.895 49 H 0.252 0.748 50 H 0.033 0.967 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 8.502 -20.585 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.033 4.033 3 N -0.315 5.315 4 C 0.296 3.704 5 O -0.422 6.422 6 C -0.007 4.007 7 N -0.389 5.389 8 C 0.427 3.573 9 O -0.469 6.469 10 N -0.377 5.377 11 C -0.027 4.027 12 C -0.168 4.168 13 C -0.173 4.173 14 C 0.002 3.998 15 C 0.032 3.968 16 H 0.094 0.906 17 C -0.191 4.191 18 C 0.030 3.970 19 N -0.329 5.329 20 C -0.352 4.352 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.567 5.567 24 Si 0.745 3.255 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.004 4.004 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.245 0.755 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.028 0.972 48 H 0.123 0.877 49 H 0.062 0.938 50 H 0.051 0.949 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.082 8.087 -20.497 23.145 hybrid contribution 0.285 -0.250 0.901 0.978 sum -6.797 7.838 -19.596 22.173 Atomic orbital electron populations 1.22249 0.95828 1.02429 1.02224 1.21807 0.94335 0.82386 1.04821 1.47885 1.63877 1.14265 1.05509 1.20323 0.78474 0.86284 0.85344 1.90652 1.44138 1.20214 1.87161 1.20995 1.02315 0.93764 0.83666 1.44770 1.68671 1.22109 1.03359 1.15278 0.78933 0.83302 0.79794 1.90931 1.51540 1.20709 1.83756 1.47518 1.66902 1.17575 1.05711 1.22038 0.98524 0.83724 0.98437 1.22601 1.00294 1.00262 0.93597 1.22817 1.00264 0.94987 0.99220 1.22076 1.02330 0.96892 0.78549 1.22053 0.98355 0.94284 0.82069 0.90603 1.23345 0.94226 1.00869 1.00671 1.21913 0.93329 0.88767 0.92965 1.44546 1.01053 1.54137 1.33155 1.19088 0.93539 1.18814 1.03794 0.90408 1.24801 0.95485 1.00761 0.99512 1.69832 0.97944 1.47759 1.41211 0.86010 0.77454 0.80182 0.81891 1.20526 1.21777 1.21765 1.21727 0.91465 0.94817 0.92348 0.91783 0.92894 0.91365 0.90621 0.87531 0.88560 0.88597 0.75507 0.91408 0.91314 0.90355 0.89884 0.89650 0.90526 0.91587 0.90319 0.91230 0.91482 0.97196 0.87738 0.93760 0.94883 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.87 37.16 0.37 -1.59 16 2 C 0.09 1.26 5.24 -4.04 -0.02 1.24 16 3 N -0.58 -9.18 2.62 -164.02 -0.43 -9.61 16 4 C 0.51 7.85 7.42 -10.99 -0.08 7.77 16 5 O -0.54 -9.56 14.31 5.55 0.08 -9.48 16 6 C 0.12 1.60 4.78 -5.19 -0.02 1.57 16 7 N -0.73 -9.56 5.49 -66.42 -0.36 -9.93 16 8 C 0.73 10.09 8.49 -86.92 -0.74 9.35 16 9 O -0.59 -10.14 16.60 5.29 0.09 -10.05 16 10 N -0.64 -6.81 3.33 -176.23 -0.59 -7.39 16 11 C 0.10 0.74 6.14 -3.07 -0.02 0.72 16 12 C -0.13 -0.67 6.95 -24.90 -0.17 -0.85 16 13 C -0.13 -0.72 7.08 -24.57 -0.17 -0.90 16 14 C 0.12 1.06 6.91 -2.52 -0.02 1.04 16 15 C 0.14 2.40 3.30 -66.09 -0.22 2.19 16 16 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 17 C -0.15 -3.05 6.47 -24.58 -0.16 -3.21 16 18 C 0.15 3.74 5.87 -2.53 -0.01 3.72 16 19 N -0.60 -14.70 3.27 -170.07 -0.56 -15.25 16 20 C -0.22 -6.00 10.27 -15.06 -0.15 -6.16 16 21 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -26.44 10.09 55.49 0.56 -25.88 16 24 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 C 0.12 2.40 6.04 -3.07 -0.02 2.38 16 29 H 0.06 0.78 7.01 -51.92 -0.36 0.42 16 30 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.95 6.34 -51.93 -0.33 0.62 16 33 H 0.11 1.83 6.12 -51.93 -0.32 1.51 16 34 H 0.10 1.28 7.25 -51.93 -0.38 0.90 16 35 H 0.10 1.18 7.36 -51.93 -0.38 0.80 16 36 H 0.41 5.11 6.42 -40.82 -0.26 4.84 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 45 H 0.07 1.41 6.65 -51.93 -0.35 1.06 16 46 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.10 2.88 5.87 -51.93 -0.30 2.57 16 49 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.04 0.74 4.25 -51.93 -0.22 0.52 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -32.90 393.43 -10.17 -43.06 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.32 Total: 5.04 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: -1.54 Total: 16.90 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -1.38 Total: -68.07 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.17 Total: -19.53 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.90 -10.17 -43.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318471816.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.151 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds