Wall clock time and date at job start Tue Mar 31 2020 21:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47414 * 2 1 4 4 C 1.34770 * 120.00147 * 266.71797 * 3 2 1 5 5 O 1.21284 * 119.99725 * 184.88451 * 4 3 2 6 6 C 1.50701 * 120.00160 * 4.88033 * 4 3 2 7 7 N 1.46504 * 109.47071 * 180.02562 * 6 4 3 8 8 C 1.34769 * 119.99730 * 180.02562 * 7 6 4 9 9 O 1.21588 * 120.00325 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00005 * 180.02562 * 8 7 6 11 11 C 1.47026 * 125.64646 * 359.69190 * 10 8 7 12 12 C 1.54313 * 107.27574 * 180.96514 * 11 10 8 13 13 C 1.55163 * 102.86099 * 22.52830 * 12 11 10 14 14 C 1.47422 * 125.65013 * 179.97438 * 10 8 7 15 15 C 1.46510 * 119.99613 * 86.71104 * 3 2 1 16 16 H 1.08997 * 110.63687 * 236.73399 * 15 3 2 17 17 C 1.55157 * 110.71602 * 113.59567 * 15 3 2 18 18 C 1.54910 * 101.58319 * 276.95813 * 17 15 3 19 19 N 1.47424 * 104.83154 * 322.99655 * 18 17 15 20 20 C 1.36933 * 125.64643 * 204.10767 * 19 18 17 21 21 H 1.08004 * 120.00175 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00256 * 0.02562 * 20 19 18 23 23 N 1.31624 * 119.99713 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00337 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47143 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47333 * 120.00199 * 24 22 20 27 27 H 1.48500 * 109.47255 * 240.00354 * 24 22 20 28 28 C 1.47020 * 108.70438 * 24.12430 * 19 18 17 29 29 H 1.09009 * 109.46779 * 299.99431 * 1 2 3 30 30 H 1.08997 * 109.47524 * 59.99492 * 1 2 3 31 31 H 1.09003 * 109.47426 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47176 * 240.00424 * 2 1 3 33 33 H 1.09004 * 109.47667 * 120.00185 * 2 1 3 34 34 H 1.08995 * 109.47036 * 300.00035 * 6 4 3 35 35 H 1.08992 * 109.46654 * 60.00593 * 6 4 3 36 36 H 0.97004 * 119.99870 * 0.02562 * 7 6 4 37 37 H 1.09000 * 109.87916 * 300.51231 * 11 10 8 38 38 H 1.09002 * 109.88149 * 61.67699 * 11 10 8 39 39 H 1.08996 * 110.92812 * 264.11155 * 12 11 10 40 40 H 1.09001 * 110.73978 * 140.85281 * 12 11 10 41 41 H 1.08997 * 111.00377 * 206.22542 * 13 12 11 42 42 H 1.09001 * 111.03527 * 82.39111 * 13 12 11 43 43 H 1.08999 * 110.36693 * 274.67378 * 14 10 8 44 44 H 1.08999 * 110.37064 * 36.99462 * 14 10 8 45 45 H 1.09003 * 111.00414 * 35.03723 * 17 15 3 46 46 H 1.09000 * 110.99923 * 158.88443 * 17 15 3 47 47 H 1.09001 * 110.36491 * 81.83130 * 18 17 15 48 48 H 1.08996 * 110.36945 * 204.15268 * 18 17 15 49 49 H 0.96996 * 119.99962 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.88497 * 239.52424 * 28 19 18 51 51 H 1.09006 * 109.88404 * 118.36148 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3060 1.9943 -1.1652 5 8 2.7935 3.1048 -1.1619 6 6 2.0220 1.2999 -2.4722 7 7 2.4213 2.1676 -3.5830 8 6 2.2587 1.7521 -4.8547 9 8 1.7811 0.6569 -5.0801 10 7 2.6264 2.5501 -5.8767 11 6 3.2090 3.8939 -5.7478 12 6 3.4439 4.4304 -7.1754 13 6 2.4511 3.5949 -8.0261 14 6 2.5058 2.2227 -7.3090 15 6 2.1939 2.0960 1.2668 16 1 1.6139 3.0188 1.2707 17 6 3.6949 2.3899 1.5277 18 6 4.1711 1.0515 2.1453 19 7 3.0417 0.5963 2.9762 20 6 3.1304 -0.2498 4.0492 21 1 2.2401 -0.5248 4.5953 22 6 4.3647 -0.7542 4.4352 23 7 5.4499 -0.4187 3.7701 24 14 4.4857 -1.9090 5.8985 25 1 3.1325 -2.1278 6.4696 26 1 5.0526 -3.2088 5.4578 27 1 5.3682 -1.3087 6.9311 28 6 1.8042 1.2008 2.4618 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.5858 0.3682 -2.5187 35 1 0.9562 1.0837 -2.5446 36 1 2.8027 3.0412 -3.4032 37 1 2.5195 4.5470 -5.2129 38 1 4.1580 3.8369 -5.2145 39 1 4.4706 4.2515 -7.4946 40 1 3.2029 5.4919 -7.2333 41 1 2.7946 3.5108 -9.0571 42 1 1.4475 4.0183 -7.9843 43 1 3.3740 1.6544 -7.6427 44 1 1.5900 1.6612 -7.4940 45 1 4.2199 2.5989 0.5955 46 1 3.8150 3.2110 2.2344 47 1 4.3815 0.3251 1.3603 48 1 5.0555 1.2117 2.7620 49 1 6.3123 -0.7714 4.0396 50 1 1.3351 1.8039 3.2393 51 1 1.1192 0.4197 2.1320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318471816.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:08 Heat of formation + Delta-G solvation = -39.245956 kcal Electronic energy + Delta-G solvation = -30545.980373 eV Core-core repulsion = 26480.920512 eV Total energy + Delta-G solvation = -4065.059861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76991 -41.06129 -39.10247 -38.41616 -36.56890 -35.62199 -34.23283 -32.62231 -31.98568 -30.57136 -30.03933 -29.55754 -28.14116 -26.36832 -24.56670 -24.16445 -22.43383 -22.04453 -21.83250 -21.14197 -20.01327 -19.19927 -18.90394 -18.23823 -17.68080 -17.40467 -17.00461 -16.83695 -16.65552 -15.95639 -15.81340 -15.55033 -15.03426 -14.85294 -14.57550 -14.42896 -14.37877 -14.11742 -13.89530 -13.73412 -13.65573 -13.50695 -13.36604 -13.19885 -12.89540 -12.87732 -12.71888 -12.37966 -12.20435 -12.13251 -12.01209 -11.95859 -11.92730 -11.69276 -11.59043 -11.55255 -11.47664 -10.89828 -10.74129 -10.40546 -9.70565 -9.57637 -8.88138 -7.76013 -5.20559 1.33773 1.43212 1.48466 1.48687 1.58973 1.98092 2.00737 2.50249 2.93014 3.26432 3.35384 3.68282 3.69205 3.71787 3.81331 3.98278 4.04370 4.07425 4.19963 4.26619 4.28198 4.31173 4.38334 4.49106 4.57248 4.63297 4.63787 4.66723 4.83024 4.86253 4.92974 4.96058 4.98476 5.00020 5.05759 5.12243 5.13971 5.20924 5.24738 5.36491 5.37919 5.47982 5.57464 5.61617 5.79915 5.94290 6.29477 6.32733 6.81725 6.98200 7.10622 7.39906 7.77995 8.41925 9.26083 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.002309 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.266211 B =12122.486932 C =12366.186509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.089 3.911 3 N -0.585 5.585 4 C 0.512 3.488 5 O -0.565 6.565 6 C 0.128 3.872 7 N -0.728 5.728 8 C 0.718 3.282 9 O -0.630 6.630 10 N -0.639 5.639 11 C 0.088 3.912 12 C -0.122 4.122 13 C -0.123 4.123 14 C 0.114 3.886 15 C 0.147 3.853 16 H 0.095 0.905 17 C -0.139 4.139 18 C 0.166 3.834 19 N -0.619 5.619 20 C -0.229 4.229 21 H 0.087 0.913 22 C -0.069 4.069 23 N -0.951 5.951 24 Si 0.978 3.022 25 H -0.263 1.263 26 H -0.296 1.296 27 H -0.296 1.296 28 C 0.122 3.878 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.410 0.590 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.069 0.931 47 H -0.017 1.017 48 H 0.068 0.932 49 H 0.245 0.755 50 H 0.041 0.959 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.725 9.404 -21.821 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.033 4.033 3 N -0.317 5.317 4 C 0.300 3.700 5 O -0.445 6.445 6 C 0.000 4.000 7 N -0.387 5.387 8 C 0.420 3.580 9 O -0.511 6.511 10 N -0.376 5.376 11 C -0.034 4.034 12 C -0.159 4.159 13 C -0.161 4.161 14 C -0.008 4.008 15 C 0.044 3.956 16 H 0.113 0.887 17 C -0.179 4.179 18 C 0.041 3.959 19 N -0.345 5.345 20 C -0.358 4.358 21 H 0.105 0.895 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.807 3.193 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.223 1.223 28 C -0.003 4.003 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.248 0.752 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.001 0.999 48 H 0.086 0.914 49 H 0.054 0.946 50 H 0.059 0.941 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.727 9.024 -21.757 25.119 hybrid contribution 0.788 -0.508 1.239 1.554 sum -7.940 8.516 -20.518 23.591 Atomic orbital electron populations 1.22177 0.93412 1.03620 1.02654 1.21860 0.96218 0.81185 1.03997 1.47917 1.64042 1.14815 1.04955 1.20598 0.77693 0.85968 0.85739 1.90642 1.45061 1.21281 1.87504 1.20935 1.03163 0.93368 0.82498 1.44724 1.68609 1.22120 1.03203 1.15468 0.78940 0.83239 0.80359 1.90893 1.53419 1.22452 1.84363 1.47683 1.65857 1.18222 1.05880 1.22272 0.98300 0.82339 1.00510 1.22623 1.00757 1.01108 0.91461 1.22800 1.00650 0.92684 0.99980 1.22299 1.01766 0.98937 0.77789 1.21866 0.96457 0.94781 0.82511 0.88730 1.23149 0.96050 0.98492 1.00165 1.21556 0.92528 0.90138 0.91680 1.44745 1.02829 1.54112 1.32858 1.19476 0.93741 1.18481 1.04102 0.89542 1.25617 0.95391 1.02827 1.02290 1.70085 0.98098 1.49089 1.42796 0.84999 0.77825 0.77763 0.78676 1.18760 1.22289 1.22291 1.21880 0.89900 0.95428 0.93095 0.92217 0.91512 0.89826 0.89155 0.90696 0.88560 0.87147 0.75159 0.91033 0.91472 0.89500 0.87979 0.87398 0.90308 0.91379 0.91694 0.91448 0.91206 0.99857 0.91447 0.94566 0.94065 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.87 71.98 0.71 -2.62 16 2 C 0.09 2.41 5.24 86.38 0.45 2.87 16 3 N -0.59 -17.74 2.62 -791.24 -2.07 -19.81 16 4 C 0.51 15.19 7.42 87.66 0.65 15.84 16 5 O -0.56 -19.28 14.31 -3.04 -0.04 -19.33 16 6 C 0.13 3.26 4.78 85.63 0.41 3.67 16 7 N -0.73 -18.51 5.49 -482.31 -2.65 -21.16 16 8 C 0.72 19.70 8.49 179.06 1.52 21.22 16 9 O -0.63 -21.59 16.60 -3.99 -0.07 -21.66 16 10 N -0.64 -13.10 3.33 -829.74 -2.76 -15.86 16 11 C 0.09 1.22 6.14 86.72 0.53 1.76 16 12 C -0.12 -0.93 6.95 31.78 0.22 -0.71 16 13 C -0.12 -1.02 7.08 31.99 0.23 -0.79 16 14 C 0.11 1.83 6.91 86.86 0.60 2.43 16 15 C 0.15 5.06 3.30 46.18 0.15 5.21 16 16 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 17 C -0.14 -5.61 6.47 31.99 0.21 -5.40 16 18 C 0.17 8.27 5.87 86.86 0.51 8.78 16 19 N -0.62 -30.44 3.27 -691.99 -2.26 -32.70 16 20 C -0.23 -12.31 10.27 84.03 0.86 -11.45 16 21 H 0.09 4.40 7.83 -2.91 -0.02 4.37 16 22 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 23 N -0.95 -56.56 10.09 21.65 0.22 -56.35 16 24 Si 0.98 45.06 29.55 68.60 2.03 47.09 16 25 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 27 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 28 C 0.12 4.63 6.04 86.73 0.52 5.15 16 29 H 0.06 1.30 7.01 -2.38 -0.02 1.28 16 30 H 0.07 1.22 7.36 -2.39 -0.02 1.20 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 2.16 6.34 -2.39 -0.02 2.14 16 33 H 0.07 2.54 6.12 -2.38 -0.01 2.53 16 34 H 0.10 2.49 7.25 -2.39 -0.02 2.47 16 35 H 0.11 2.52 7.36 -2.39 -0.02 2.50 16 36 H 0.41 9.96 6.42 -92.71 -0.60 9.37 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.10 0.45 8.14 -2.39 -0.02 0.44 16 41 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.21 8.04 -2.39 -0.02 1.19 16 45 H 0.07 2.74 6.65 -2.39 -0.02 2.73 16 46 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 47 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 48 H 0.07 3.89 5.87 -2.39 -0.01 3.88 16 49 H 0.24 14.23 8.31 -92.71 -0.77 13.45 16 50 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.06 2.07 4.25 -2.38 -0.01 2.06 16 Total: -1.00 -72.74 393.43 0.78 -71.96 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.34 Total: 25.24 kcal Atomic # 6 Polarization: 34.53 SS G_CDS: 8.05 Total: 42.57 kcal Atomic # 7 Polarization: -136.35 SS G_CDS: -9.53 Total: -145.88 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.11 Total: -40.99 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -72.74 0.78 -71.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318471816.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.715 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds