Wall clock time and date at job start Tue Mar 31 2020 21:43:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46497 * 109.47188 * 2 1
4 4 C 1.34785 * 120.00049 * 89.99908 * 3 2 1
5 5 O 1.21280 * 120.00330 * 180.02562 * 4 3 2
6 6 C 1.50701 * 119.99545 * 0.02562 * 4 3 2
7 7 N 1.46498 * 109.46851 * 179.97438 * 6 4 3
8 8 C 1.34782 * 119.99973 * 179.97438 * 7 6 4
9 9 O 1.21586 * 119.99732 * 0.02562 * 8 7 6
10 10 N 1.34774 * 120.00267 * 179.97438 * 8 7 6
11 11 C 1.47029 * 125.64664 * 359.69363 * 10 8 7
12 12 C 1.54308 * 107.27494 * 180.97030 * 11 10 8
13 13 C 1.55161 * 102.86646 * 22.52603 * 12 11 10
14 14 C 1.47422 * 125.65032 * 180.02562 * 10 8 7
15 15 C 1.46500 * 120.00784 * 270.00147 * 3 2 1
16 16 H 1.09004 * 110.63680 * 359.30350 * 15 3 2
17 17 C 1.55159 * 110.72275 * 122.43498 * 15 3 2
18 18 C 1.55125 * 101.48468 * 153.73986 * 17 15 3
19 19 N 1.47422 * 104.94246 * 323.22382 * 18 17 15
20 20 C 1.36932 * 125.64852 * 204.03856 * 19 18 17
21 21 H 1.08007 * 120.00061 * 179.97438 * 20 19 18
22 22 C 1.38812 * 120.00399 * 359.96050 * 20 19 18
23 23 N 1.31621 * 119.99461 * 359.97438 * 22 20 19
24 24 Si 1.86793 * 120.00381 * 180.02562 * 22 20 19
25 25 H 1.48496 * 109.47518 * 89.99986 * 24 22 20
26 26 H 1.48507 * 109.46987 * 209.99919 * 24 22 20
27 27 H 1.48496 * 109.47140 * 329.99483 * 24 22 20
28 28 C 1.47030 * 108.70505 * 24.00601 * 19 18 17
29 29 H 1.09002 * 109.47153 * 299.99573 * 1 2 3
30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.47261 * 59.99745 * 1 2 3
32 32 H 1.08996 * 109.47853 * 120.00399 * 2 1 3
33 33 H 1.09002 * 109.47153 * 240.00427 * 2 1 3
34 34 H 1.08998 * 109.46882 * 299.99456 * 6 4 3
35 35 H 1.09003 * 109.47544 * 59.99294 * 6 4 3
36 36 H 0.96994 * 120.00034 * 359.97438 * 7 6 4
37 37 H 1.08995 * 109.88068 * 300.51833 * 11 10 8
38 38 H 1.09000 * 109.88041 * 61.67629 * 11 10 8
39 39 H 1.09001 * 110.92261 * 264.11263 * 12 11 10
40 40 H 1.08997 * 110.74521 * 140.85897 * 12 11 10
41 41 H 1.08997 * 111.00421 * 206.22959 * 13 12 11
42 42 H 1.08995 * 111.03325 * 82.38798 * 13 12 11
43 43 H 1.08998 * 110.36609 * 274.67398 * 14 10 8
44 44 H 1.08998 * 110.36891 * 36.99375 * 14 10 8
45 45 H 1.08998 * 111.00492 * 271.95066 * 17 15 3
46 46 H 1.09002 * 111.00057 * 35.79921 * 17 15 3
47 47 H 1.09000 * 110.41791 * 204.30038 * 18 17 15
48 48 H 1.08999 * 110.29797 * 82.08884 * 18 17 15
49 49 H 0.96995 * 120.00028 * 180.02562 * 23 22 20
50 50 H 1.09000 * 109.87952 * 239.51964 * 28 19 18
51 51 H 1.08999 * 109.88467 * 118.35391 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2429 2.0166 1.1673
5 8 2.6468 3.1602 1.1673
6 6 1.9923 1.3059 2.4723
7 7 2.3101 2.2032 3.5858
8 6 2.1603 1.7796 4.8566
9 8 1.7619 0.6526 5.0787
10 7 2.4531 2.6049 5.8810
11 6 2.9485 3.9836 5.7560
12 6 3.1643 4.5243 7.1851
13 6 3.3255 3.2290 8.0239
14 6 2.3363 2.2726 7.3125
15 6 2.2625 2.0720 -1.2686
16 1 2.0438 1.4162 -2.1114
17 6 1.4240 3.3746 -1.3548
18 6 2.2827 4.2314 -2.3216
19 7 3.6793 3.9118 -1.9742
20 6 4.7630 4.7168 -2.2038
21 1 5.7499 4.3905 -1.9102
22 6 4.5934 5.9519 -2.8141
23 7 3.3908 6.3491 -3.1726
24 14 6.0718 7.0496 -3.1280
25 1 6.6396 6.7448 -4.4658
26 1 5.6502 8.4729 -3.0818
27 1 7.1007 6.8042 -2.0858
28 6 3.7158 2.5860 -1.3396
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5139 -0.8900
32 1 1.8934 -0.5139 0.8899
33 1 1.8933 -0.5138 -0.8900
34 1 0.9444 1.0114 2.5302
35 1 2.6227 0.4185 2.5299
36 1 2.6282 3.1022 3.4086
37 1 3.8910 3.9906 5.2087
38 1 2.2116 4.5966 5.2371
39 1 2.2984 5.0955 7.5200
40 1 4.0681 5.1315 7.2357
41 1 3.0313 3.3955 9.0602
42 1 4.3456 2.8496 7.9656
43 1 1.3192 2.4508 7.6616
44 1 2.6213 1.2348 7.4855
45 1 0.4375 3.1772 -1.7744
46 1 1.3430 3.8523 -0.3784
47 1 2.0864 5.2922 -2.1660
48 1 2.0765 3.9557 -3.3558
49 1 3.2722 7.2120 -3.5994
50 1 4.1298 2.6674 -0.3345
51 1 4.3211 1.9051 -1.9380
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001318471817.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:43:13
Heat of formation + Delta-G solvation = -42.614215 kcal
Electronic energy + Delta-G solvation = -30700.859668 eV
Core-core repulsion = 26635.653748 eV
Total energy + Delta-G solvation = -4065.205920 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.76455 -41.04114 -38.79237 -38.31942 -36.85401 -35.59544 -34.29120 -32.64002
-31.62858 -30.80125 -30.09162 -29.40442 -27.95576 -26.31368 -24.64181 -24.04586
-22.48505 -22.07951 -22.03381 -21.13065 -20.13280 -19.13870 -18.86285 -17.92809
-17.68408 -17.45494 -16.86064 -16.70788 -16.49754 -15.95778 -15.74588 -15.58255
-14.99514 -14.74749 -14.57878 -14.39479 -14.34776 -14.25305 -14.04733 -13.90888
-13.73739 -13.42104 -13.28280 -13.09510 -12.99394 -12.75214 -12.70496 -12.34703
-12.22964 -12.15432 -12.14443 -12.03893 -12.02472 -11.80752 -11.61527 -11.47818
-11.37187 -10.73524 -10.63439 -10.39375 -9.67126 -9.58832 -8.84867 -7.75975
-5.19350 1.36092 1.44114 1.47057 1.51740 1.55692 1.98795 1.99435
2.50552 2.91364 3.30210 3.35770 3.66023 3.70325 3.75784 3.91155
4.00288 4.04663 4.09932 4.22368 4.25881 4.28453 4.29744 4.45029
4.47051 4.58572 4.61436 4.69146 4.74032 4.83970 4.85989 4.91016
4.95388 4.97899 5.03680 5.04124 5.09986 5.14152 5.20329 5.24181
5.34350 5.42646 5.43790 5.63148 5.73540 5.81078 5.92591 6.31521
6.38660 6.79193 7.11156 7.12408 7.38433 7.79777 8.43636 9.25800
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.010225 B = 0.003176 C = 0.002535
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2737.670434 B = 8814.140345 C =11043.520282
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.094 3.906
3 N -0.594 5.594
4 C 0.500 3.500
5 O -0.555 6.555
6 C 0.130 3.870
7 N -0.733 5.733
8 C 0.720 3.280
9 O -0.626 6.626
10 N -0.639 5.639
11 C 0.088 3.912
12 C -0.122 4.122
13 C -0.123 4.123
14 C 0.116 3.884
15 C 0.153 3.847
16 H 0.120 0.880
17 C -0.137 4.137
18 C 0.161 3.839
19 N -0.617 5.617
20 C -0.235 4.235
21 H 0.073 0.927
22 C -0.069 4.069
23 N -0.949 5.949
24 Si 0.981 3.019
25 H -0.283 1.283
26 H -0.292 1.292
27 H -0.273 1.273
28 C 0.130 3.870
29 H 0.049 0.951
30 H 0.091 0.909
31 H 0.054 0.946
32 H 0.099 0.901
33 H 0.101 0.899
34 H 0.109 0.891
35 H 0.108 0.892
36 H 0.407 0.593
37 H 0.063 0.937
38 H 0.065 0.935
39 H 0.089 0.911
40 H 0.097 0.903
41 H 0.110 0.890
42 H 0.076 0.924
43 H 0.072 0.928
44 H 0.067 0.933
45 H 0.083 0.917
46 H 0.058 0.942
47 H 0.066 0.934
48 H -0.005 1.005
49 H 0.246 0.754
50 H 0.021 0.979
51 H 0.022 0.978
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.632 -12.180 19.026 23.282
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.027 4.027
3 N -0.326 5.326
4 C 0.288 3.712
5 O -0.433 6.433
6 C 0.002 3.998
7 N -0.391 5.391
8 C 0.422 3.578
9 O -0.508 6.508
10 N -0.377 5.377
11 C -0.035 4.035
12 C -0.160 4.160
13 C -0.161 4.161
14 C -0.006 4.006
15 C 0.049 3.951
16 H 0.138 0.862
17 C -0.177 4.177
18 C 0.036 3.964
19 N -0.343 5.343
20 C -0.364 4.364
21 H 0.091 0.909
22 C -0.261 4.261
23 N -0.599 5.599
24 Si 0.809 3.191
25 H -0.210 1.210
26 H -0.218 1.218
27 H -0.198 1.198
28 C 0.003 3.997
29 H 0.068 0.932
30 H 0.110 0.890
31 H 0.073 0.927
32 H 0.117 0.883
33 H 0.120 0.880
34 H 0.126 0.874
35 H 0.126 0.874
36 H 0.244 0.756
37 H 0.082 0.918
38 H 0.084 0.916
39 H 0.108 0.892
40 H 0.116 0.884
41 H 0.129 0.871
42 H 0.095 0.905
43 H 0.090 0.910
44 H 0.085 0.915
45 H 0.101 0.899
46 H 0.077 0.923
47 H 0.084 0.916
48 H 0.013 0.987
49 H 0.056 0.944
50 H 0.039 0.961
51 H 0.040 0.960
Dipole moment (debyes) X Y Z Total
from point charges -5.670 -12.283 19.024 23.344
hybrid contribution 0.854 1.266 -0.799 1.724
sum -4.816 -11.017 18.225 21.834
Atomic orbital electron populations
1.22197 0.94733 1.03609 1.02058 1.22018 0.95412 0.79838 1.05453
1.47969 1.64998 1.15414 1.04227 1.20831 0.77494 0.86609 0.86268
1.90804 1.45899 1.19269 1.87291 1.20999 1.03899 0.92664 0.82214
1.44846 1.72015 1.18738 1.03520 1.15427 0.78627 0.83519 0.80234
1.90873 1.55568 1.19959 1.84426 1.47698 1.69248 1.14684 1.06075
1.22230 0.99133 0.81546 1.00545 1.22619 1.04247 0.97695 0.91432
1.22801 0.99209 0.93956 1.00169 1.22291 1.00468 1.00209 0.77625
1.21957 0.93789 0.93655 0.85658 0.86187 1.23190 0.98200 0.96061
1.00208 1.21626 0.82479 0.99464 0.92844 1.44557 1.03953 1.16125
1.69682 1.19386 0.87325 0.97657 1.32056 0.90864 1.25624 0.99762
0.99158 1.01525 1.70064 1.21230 1.21078 1.47523 0.85036 0.78388
0.77682 0.77967 1.21001 1.21799 1.19832 1.21623 0.95882 0.86679
0.95487 0.93197 0.88982 0.92728 0.88326 0.88033 0.87370 0.87438
0.75560 0.91826 0.91631 0.89232 0.88411 0.87128 0.90540 0.91001
0.91462 0.89881 0.92342 0.91631 0.98745 0.94391 0.96103 0.95978
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.42 10.24 71.98 0.74 -1.68 16
2 C 0.09 1.52 5.92 86.38 0.51 2.04 16
3 N -0.59 -15.82 2.54 -791.25 -2.01 -17.83 16
4 C 0.50 15.28 6.84 87.66 0.60 15.88 16
5 O -0.55 -22.53 12.03 -3.03 -0.04 -22.57 16
6 C 0.13 3.19 4.71 85.63 0.40 3.60 16
7 N -0.73 -20.01 5.49 -482.30 -2.65 -22.66 16
8 C 0.72 20.42 8.49 179.05 1.52 21.94 16
9 O -0.63 -21.06 16.60 -3.99 -0.07 -21.13 16
10 N -0.64 -14.34 3.33 -829.82 -2.76 -17.10 16
11 C 0.09 1.57 6.14 86.72 0.53 2.10 16
12 C -0.12 -1.33 6.95 31.78 0.22 -1.11 16
13 C -0.12 -1.27 7.08 31.98 0.23 -1.04 16
14 C 0.12 1.98 6.91 86.85 0.60 2.58 16
15 C 0.15 5.20 3.43 46.18 0.16 5.36 16
16 H 0.12 3.40 7.86 -2.39 -0.02 3.38 16
17 C -0.14 -5.49 6.44 32.06 0.21 -5.28 16
18 C 0.16 8.39 5.89 86.93 0.51 8.90 16
19 N -0.62 -33.89 3.40 -691.55 -2.35 -36.24 16
20 C -0.24 -14.02 10.27 84.03 0.86 -13.16 16
21 H 0.07 4.25 7.83 -2.91 -0.02 4.22 16
22 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16
23 N -0.95 -58.76 10.09 21.65 0.22 -58.54 16
24 Si 0.98 47.59 29.55 68.60 2.03 49.61 16
25 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16
26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16
27 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16
28 C 0.13 5.74 6.48 86.73 0.56 6.30 16
29 H 0.05 0.80 7.22 -2.39 -0.02 0.78 16
30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16
31 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16
32 H 0.10 1.26 6.44 -2.39 -0.02 1.24 16
33 H 0.10 1.34 7.94 -2.39 -0.02 1.32 16
34 H 0.11 2.37 7.19 -2.39 -0.02 2.36 16
35 H 0.11 2.35 7.40 -2.39 -0.02 2.33 16
36 H 0.41 11.69 6.42 -92.71 -0.60 11.09 16
37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
39 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16
40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16
41 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16
42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16
43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
44 H 0.07 1.29 8.04 -2.39 -0.02 1.27 16
45 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16
46 H 0.06 2.60 6.03 -2.39 -0.01 2.58 16
47 H 0.07 3.95 5.87 -2.39 -0.01 3.94 16
48 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16
49 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16
50 H 0.02 1.00 6.07 -2.39 -0.01 0.99 16
51 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16
Total: -1.00 -81.34 395.95 0.83 -80.51
By element:
Atomic # 1 Polarization: 22.80 SS G_CDS: 0.33 Total: 23.14 kcal
Atomic # 6 Polarization: 34.69 SS G_CDS: 8.12 Total: 42.81 kcal
Atomic # 7 Polarization: -142.83 SS G_CDS: -9.55 Total: -152.38 kcal
Atomic # 8 Polarization: -43.59 SS G_CDS: -0.10 Total: -43.69 kcal
Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal
Total: -81.34 0.83 -80.51 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001318471817.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.899 kcal
(2) G-P(sol) polarization free energy of solvation -81.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.443 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.513 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.614 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds