Wall clock time and date at job start Tue Mar 31 2020 22:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46845 * 111.00248 * 2 1 4 4 C 1.53036 * 109.52590 * 174.16219 * 3 2 1 5 5 C 1.53116 * 109.27895 * 59.17628 * 4 3 2 6 6 C 1.53120 * 109.16271 * 302.35108 * 5 4 3 7 7 C 1.46849 * 110.99829 * 235.79059 * 2 1 3 8 8 H 1.09002 * 109.45484 * 65.83029 * 7 2 1 9 9 C 1.50698 * 109.46117 * 305.85537 * 7 2 1 10 10 O 1.21277 * 120.00459 * 339.95025 * 9 7 2 11 11 N 1.34782 * 120.00095 * 159.94480 * 9 7 2 12 12 C 1.46497 * 120.00221 * 180.27452 * 11 9 7 13 13 C 1.53002 * 109.47256 * 174.19759 * 12 11 9 14 14 N 1.46900 * 115.54997 * 270.22876 * 13 12 11 15 15 C 1.46904 * 110.99846 * 294.93640 * 14 13 12 16 16 C 1.50696 * 109.47080 * 189.61609 * 15 14 13 17 17 O 1.21289 * 120.00213 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99914 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00024 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00027 * 0.02562 * 19 18 16 21 21 C 1.38943 * 119.99937 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00409 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00067 * 0.02562 * 21 19 18 24 24 H 1.48509 * 109.47139 * 89.99983 * 23 21 19 25 25 H 1.48501 * 109.47441 * 209.99786 * 23 21 19 26 26 H 1.48496 * 109.47149 * 329.99912 * 23 21 19 27 27 C 1.52996 * 117.50126 * 124.55234 * 13 12 11 28 28 C 1.52996 * 117.49792 * 55.88968 * 13 12 11 29 29 H 1.08999 * 109.47569 * 184.21182 * 1 2 3 30 30 H 1.09003 * 109.46977 * 304.21038 * 1 2 3 31 31 H 1.09003 * 109.47459 * 64.20552 * 1 2 3 32 32 H 1.08998 * 109.46226 * 54.14779 * 3 2 1 33 33 H 1.09003 * 109.46186 * 294.17605 * 3 2 1 34 34 H 1.08999 * 109.50024 * 299.24165 * 4 3 2 35 35 H 1.09000 * 109.50601 * 179.12029 * 4 3 2 36 36 H 1.08997 * 109.52999 * 182.44129 * 5 4 3 37 37 H 1.09000 * 109.57501 * 62.28405 * 5 4 3 38 38 H 1.08998 * 109.50130 * 297.71072 * 6 5 4 39 39 H 1.09005 * 109.53627 * 177.61741 * 6 5 4 40 40 H 0.96999 * 119.99554 * 0.02562 * 11 9 7 41 41 H 1.08998 * 109.47393 * 294.20095 * 12 11 9 42 42 H 1.08997 * 109.46810 * 54.19732 * 12 11 9 43 43 H 1.00898 * 111.00392 * 58.88815 * 14 13 12 44 44 H 1.08996 * 109.47135 * 309.61786 * 15 14 13 45 45 H 1.09001 * 109.47037 * 69.61651 * 15 14 13 46 46 H 0.97004 * 119.99753 * 0.02562 * 18 16 15 47 47 H 0.97001 * 120.00692 * 179.97438 * 22 21 19 48 48 H 1.09002 * 117.49385 * 0.02562 * 27 13 12 49 49 H 1.08995 * 117.49790 * 145.01609 * 27 13 12 50 50 H 1.08995 * 117.50314 * 214.97815 * 28 13 12 51 51 H 1.09001 * 117.50077 * 0.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5369 -1.0144 6 6 3.5180 -0.8715 -1.0209 7 6 1.9952 -0.7708 -1.1338 8 1 1.7324 -0.2707 -2.0660 9 6 1.3981 -2.1544 -1.1206 10 8 0.9172 -2.5976 -0.0993 11 7 1.3984 -2.8993 -2.2439 12 6 0.8126 -4.2419 -2.2326 13 6 0.8111 -4.8097 -3.6534 14 7 -0.3878 -4.5183 -4.4508 15 6 -1.5738 -5.1651 -3.8738 16 6 -2.7288 -5.0448 -4.8343 17 8 -2.5789 -4.4758 -5.8949 18 7 -3.9285 -5.5695 -4.5147 19 6 -4.9794 -5.4596 -5.3882 20 1 -4.8459 -4.9529 -6.3326 21 6 -6.2163 -6.0000 -5.0585 22 7 -7.2235 -5.8952 -5.8959 23 14 -6.4474 -6.8757 -3.4247 24 1 -6.8788 -5.8965 -2.3949 25 1 -7.4833 -7.9297 -3.5701 26 1 -5.1639 -7.4969 -3.0101 27 6 1.4965 -6.1593 -3.8757 28 6 2.1506 -4.8743 -4.3897 29 1 -0.3634 -1.0248 0.0755 30 1 -0.3633 0.5778 0.8499 31 1 -0.3634 0.4472 -0.9253 32 1 1.5635 1.9257 0.8330 33 1 1.7325 1.8608 -0.9376 34 1 3.7813 0.8566 1.0905 35 1 3.9100 2.3512 0.1310 36 1 5.1997 0.4712 -0.8906 37 1 3.8897 1.0349 -1.9565 38 1 3.7813 -1.3837 -0.0954 39 1 3.9098 -1.4310 -1.8704 40 1 1.7834 -2.5448 -3.0606 41 1 1.4012 -4.8898 -1.5831 42 1 -0.2109 -4.1886 -1.8615 43 1 -0.5275 -3.5233 -4.5433 44 1 -1.3609 -6.2184 -3.6918 45 1 -1.8314 -4.6786 -2.9330 46 1 -4.0485 -6.0242 -3.6662 47 1 -8.0869 -6.2728 -5.6659 48 1 1.9482 -6.6430 -3.0096 49 1 1.0581 -6.8309 -4.6137 50 1 2.1424 -4.7013 -5.4658 51 1 3.0331 -4.5129 -3.8619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323519629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:41 Heat of formation + Delta-G solvation = -33.233726 kcal Electronic energy + Delta-G solvation = -29858.591299 eV Core-core repulsion = 25793.792147 eV Total energy + Delta-G solvation = -4064.799152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71417 -39.19872 -38.26944 -37.69894 -34.48884 -34.05956 -33.70495 -32.90647 -31.65091 -31.63197 -27.81545 -26.97217 -26.54479 -24.10854 -23.93313 -23.21376 -22.55251 -20.76164 -20.19206 -19.64158 -19.36299 -18.32907 -17.68948 -16.62881 -16.36717 -15.81048 -15.69778 -15.37199 -15.27963 -14.94738 -14.84735 -14.69201 -14.59318 -14.00474 -13.95258 -13.74073 -13.44128 -13.19210 -13.13865 -12.89886 -12.59297 -12.54217 -12.32727 -12.08248 -11.99268 -11.77194 -11.65906 -11.55595 -11.29514 -11.16243 -11.13657 -10.83784 -10.69729 -10.58819 -10.31895 -9.97548 -9.71647 -9.57044 -9.29910 -8.70571 -8.63994 -8.24120 -8.17405 -6.31128 -3.82615 2.38268 2.71663 3.03611 3.07827 3.15836 3.49995 3.65457 3.73696 3.90846 4.10669 4.27640 4.34543 4.38937 4.48926 4.62664 4.70615 4.71924 4.82758 4.83753 4.95695 5.06535 5.14163 5.19522 5.20600 5.26543 5.34350 5.36980 5.43075 5.47641 5.49436 5.51036 5.52733 5.66922 5.68517 5.70112 5.78089 5.84303 5.86446 5.92145 5.92974 6.07271 6.18293 6.59390 6.72088 7.00101 7.26133 7.43262 7.57973 8.01318 8.14017 8.59783 8.94905 9.42387 9.82752 10.81931 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.002421 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.129589 B =11560.934567 C =12634.325622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.520 5.520 3 C 0.055 3.945 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.106 4.106 7 C 0.070 3.930 8 H 0.061 0.939 9 C 0.516 3.484 10 O -0.520 6.520 11 N -0.725 5.725 12 C 0.128 3.872 13 C 0.013 3.987 14 N -0.624 5.624 15 C 0.048 3.952 16 C 0.451 3.549 17 O -0.563 6.563 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.148 4.148 28 C -0.154 4.154 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.022 0.978 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.401 0.599 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.351 0.649 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.096 0.904 49 H 0.106 0.894 50 H 0.106 0.894 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.533 10.024 12.505 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.245 5.245 3 C -0.073 4.073 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.042 4.042 8 H 0.079 0.921 9 C 0.301 3.699 10 O -0.395 6.395 11 N -0.378 5.378 12 C 0.003 3.997 13 C -0.080 4.080 14 N -0.255 5.255 15 C -0.085 4.085 16 C 0.237 3.763 17 O -0.445 6.445 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.186 4.186 28 C -0.192 4.192 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.236 0.764 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.171 0.829 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.114 0.886 49 H 0.124 0.876 50 H 0.124 0.876 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 24.277 9.311 12.441 28.825 hybrid contribution -0.843 0.351 0.876 1.265 sum 23.434 9.662 13.317 28.633 Atomic orbital electron populations 1.22608 0.86318 1.04339 1.00223 1.61665 1.08442 1.13023 1.41372 1.22156 0.95666 0.88629 1.00814 1.21619 0.94372 1.00264 0.99454 1.21577 1.00227 0.95096 0.98840 1.21544 0.91442 0.98144 1.03312 1.21601 0.96520 0.92079 0.94001 0.92091 1.20453 0.79168 0.86967 0.83343 1.90694 1.44724 1.72403 1.31660 1.46059 1.61780 1.17043 1.12964 1.21435 0.99510 0.82914 0.95874 1.21706 0.91812 1.03078 0.91396 1.59895 1.00308 1.17146 1.48125 1.21706 0.90476 1.00591 0.95701 1.19665 0.83362 0.84591 0.88698 1.90563 1.83010 1.45834 1.25096 1.42211 1.10073 1.51881 1.18891 1.19417 0.87083 1.35254 1.01573 0.86305 1.25035 0.95358 0.97803 0.97964 1.69618 1.01905 1.45050 1.35569 0.86681 0.78652 0.80265 0.83864 1.19631 1.20140 1.19441 1.23098 1.01886 0.90312 1.03315 1.23066 0.93515 1.01343 1.01277 0.89297 0.91128 0.95936 0.90240 0.94776 0.90838 0.91275 0.91179 0.91911 0.90328 0.90939 0.76439 0.91012 0.90663 0.82862 0.89235 0.93552 0.79695 0.91611 0.88564 0.87553 0.87576 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.09 60.06 0.55 0.68 16 2 N -0.52 -5.20 4.51 -236.33 -1.07 -6.27 16 3 C 0.06 0.42 5.46 -3.84 -0.02 0.40 16 4 C -0.12 -0.74 6.09 -26.65 -0.16 -0.90 16 5 C -0.12 -0.68 6.00 -26.61 -0.16 -0.84 16 6 C -0.11 -0.75 5.36 -26.65 -0.14 -0.89 16 7 C 0.07 0.63 2.24 -68.88 -0.15 0.48 16 8 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 9 C 0.52 5.78 6.26 -10.98 -0.07 5.72 16 10 O -0.52 -7.86 14.52 5.56 0.08 -7.78 16 11 N -0.73 -6.76 5.46 -60.30 -0.33 -7.09 16 12 C 0.13 1.36 5.76 -4.04 -0.02 1.33 16 13 C 0.01 0.14 1.82 -131.60 -0.24 -0.10 16 14 N -0.62 -9.09 6.08 -101.22 -0.62 -9.70 16 15 C 0.05 0.78 5.85 -4.98 -0.03 0.75 16 16 C 0.45 10.23 7.85 -10.98 -0.09 10.15 16 17 O -0.56 -15.09 15.97 5.55 0.09 -15.00 16 18 N -0.59 -14.18 5.09 -10.97 -0.06 -14.23 16 19 C -0.30 -8.67 10.16 -14.94 -0.15 -8.82 16 20 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.89 13.96 55.50 0.77 -25.12 16 23 Si 0.88 19.60 27.74 -169.99 -4.71 14.88 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 27 C -0.15 -1.44 10.01 -26.69 -0.27 -1.70 16 28 C -0.15 -1.35 9.61 -26.69 -0.26 -1.60 16 29 H 0.09 1.16 5.63 -51.93 -0.29 0.87 16 30 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.40 2.91 8.07 -40.82 -0.33 2.58 16 41 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 42 H 0.08 0.95 6.63 -51.93 -0.34 0.61 16 43 H 0.35 5.24 8.85 -39.29 -0.35 4.89 16 44 H 0.09 1.34 8.00 -51.93 -0.42 0.92 16 45 H 0.05 0.69 6.96 -51.93 -0.36 0.33 16 46 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 47 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.10 0.78 8.03 -51.93 -0.42 0.36 16 49 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 406.52 15.07 6.13 6.13 Total: -1.00 -34.50 406.52 -9.64 -44.15 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -8.62 Total: 14.35 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -1.31 Total: 5.69 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -1.29 Total: -62.41 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.17 Total: -22.78 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.50 -9.64 -44.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323519629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.915 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds