Wall clock time and date at job start Tue Mar 31 2020 22:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46845 * 111.00248 * 2 1 4 4 C 1.53036 * 109.52590 * 174.16219 * 3 2 1 5 5 C 1.53116 * 109.27895 * 59.17628 * 4 3 2 6 6 C 1.53120 * 109.16271 * 302.35108 * 5 4 3 7 7 C 1.46849 * 110.99829 * 235.79059 * 2 1 3 8 8 H 1.09002 * 109.45484 * 65.83029 * 7 2 1 9 9 C 1.50698 * 109.46117 * 305.85537 * 7 2 1 10 10 O 1.21277 * 120.00459 * 339.95025 * 9 7 2 11 11 N 1.34782 * 120.00095 * 159.94480 * 9 7 2 12 12 C 1.46497 * 120.00221 * 180.27452 * 11 9 7 13 13 C 1.53002 * 109.47256 * 174.19759 * 12 11 9 14 14 N 1.46900 * 115.54997 * 270.22876 * 13 12 11 15 15 C 1.46904 * 110.99846 * 294.93640 * 14 13 12 16 16 C 1.50696 * 109.47080 * 189.61609 * 15 14 13 17 17 O 1.21289 * 120.00213 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99914 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00024 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00027 * 0.02562 * 19 18 16 21 21 C 1.38943 * 119.99937 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00409 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00067 * 0.02562 * 21 19 18 24 24 H 1.48509 * 109.47139 * 89.99983 * 23 21 19 25 25 H 1.48501 * 109.47441 * 209.99786 * 23 21 19 26 26 H 1.48496 * 109.47149 * 329.99912 * 23 21 19 27 27 C 1.52996 * 117.50126 * 124.55234 * 13 12 11 28 28 C 1.52996 * 117.49792 * 55.88968 * 13 12 11 29 29 H 1.08999 * 109.47569 * 184.21182 * 1 2 3 30 30 H 1.09003 * 109.46977 * 304.21038 * 1 2 3 31 31 H 1.09003 * 109.47459 * 64.20552 * 1 2 3 32 32 H 1.08998 * 109.46226 * 54.14779 * 3 2 1 33 33 H 1.09003 * 109.46186 * 294.17605 * 3 2 1 34 34 H 1.08999 * 109.50024 * 299.24165 * 4 3 2 35 35 H 1.09000 * 109.50601 * 179.12029 * 4 3 2 36 36 H 1.08997 * 109.52999 * 182.44129 * 5 4 3 37 37 H 1.09000 * 109.57501 * 62.28405 * 5 4 3 38 38 H 1.08998 * 109.50130 * 297.71072 * 6 5 4 39 39 H 1.09005 * 109.53627 * 177.61741 * 6 5 4 40 40 H 0.96999 * 119.99554 * 0.02562 * 11 9 7 41 41 H 1.08998 * 109.47393 * 294.20095 * 12 11 9 42 42 H 1.08997 * 109.46810 * 54.19732 * 12 11 9 43 43 H 1.00898 * 111.00392 * 58.88815 * 14 13 12 44 44 H 1.08996 * 109.47135 * 309.61786 * 15 14 13 45 45 H 1.09001 * 109.47037 * 69.61651 * 15 14 13 46 46 H 0.97004 * 119.99753 * 0.02562 * 18 16 15 47 47 H 0.97001 * 120.00692 * 179.97438 * 22 21 19 48 48 H 1.09002 * 117.49385 * 0.02562 * 27 13 12 49 49 H 1.08995 * 117.49790 * 145.01609 * 27 13 12 50 50 H 1.08995 * 117.50314 * 214.97815 * 28 13 12 51 51 H 1.09001 * 117.50077 * 0.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5369 -1.0144 6 6 3.5180 -0.8715 -1.0209 7 6 1.9952 -0.7708 -1.1338 8 1 1.7324 -0.2707 -2.0660 9 6 1.3981 -2.1544 -1.1206 10 8 0.9172 -2.5976 -0.0993 11 7 1.3984 -2.8993 -2.2439 12 6 0.8126 -4.2419 -2.2326 13 6 0.8111 -4.8097 -3.6534 14 7 -0.3878 -4.5183 -4.4508 15 6 -1.5738 -5.1651 -3.8738 16 6 -2.7288 -5.0448 -4.8343 17 8 -2.5789 -4.4758 -5.8949 18 7 -3.9285 -5.5695 -4.5147 19 6 -4.9794 -5.4596 -5.3882 20 1 -4.8459 -4.9529 -6.3326 21 6 -6.2163 -6.0000 -5.0585 22 7 -7.2235 -5.8952 -5.8959 23 14 -6.4474 -6.8757 -3.4247 24 1 -6.8788 -5.8965 -2.3949 25 1 -7.4833 -7.9297 -3.5701 26 1 -5.1639 -7.4969 -3.0101 27 6 1.4965 -6.1593 -3.8757 28 6 2.1506 -4.8743 -4.3897 29 1 -0.3634 -1.0248 0.0755 30 1 -0.3633 0.5778 0.8499 31 1 -0.3634 0.4472 -0.9253 32 1 1.5635 1.9257 0.8330 33 1 1.7325 1.8608 -0.9376 34 1 3.7813 0.8566 1.0905 35 1 3.9100 2.3512 0.1310 36 1 5.1997 0.4712 -0.8906 37 1 3.8897 1.0349 -1.9565 38 1 3.7813 -1.3837 -0.0954 39 1 3.9098 -1.4310 -1.8704 40 1 1.7834 -2.5448 -3.0606 41 1 1.4012 -4.8898 -1.5831 42 1 -0.2109 -4.1886 -1.8615 43 1 -0.5275 -3.5233 -4.5433 44 1 -1.3609 -6.2184 -3.6918 45 1 -1.8314 -4.6786 -2.9330 46 1 -4.0485 -6.0242 -3.6662 47 1 -8.0869 -6.2728 -5.6659 48 1 1.9482 -6.6430 -3.0096 49 1 1.0581 -6.8309 -4.6137 50 1 2.1424 -4.7013 -5.4658 51 1 3.0331 -4.5129 -3.8619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323519629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:40 Heat of formation + Delta-G solvation = -62.072058 kcal Electronic energy + Delta-G solvation = -29859.841822 eV Core-core repulsion = 25793.792147 eV Total energy + Delta-G solvation = -4066.049675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.51204 -40.46782 -39.56081 -38.63779 -36.08028 -35.30278 -34.37356 -34.15687 -33.70155 -32.26789 -28.75392 -28.26793 -27.46065 -25.72748 -24.75458 -23.84968 -23.32720 -21.49861 -21.31842 -20.89246 -20.46437 -20.25312 -18.53288 -17.78235 -17.42888 -17.04147 -16.70874 -16.67495 -16.18932 -16.15796 -15.76283 -15.63925 -15.47079 -15.30134 -14.98091 -14.77769 -14.52929 -14.36142 -14.06782 -14.05322 -13.95213 -13.72400 -13.48435 -13.12978 -13.03453 -12.82726 -12.70916 -12.44115 -12.38618 -12.28361 -12.00919 -11.88980 -11.63350 -11.54480 -11.50009 -11.35544 -11.14641 -10.56323 -10.46843 -10.27335 -10.14937 -9.49037 -9.34585 -8.43678 -6.04392 1.28225 1.32788 1.41675 1.54169 1.92153 1.95337 2.20193 2.53141 2.83938 2.96821 3.12420 3.28287 3.56226 3.62972 3.79430 3.91276 3.97607 4.04378 4.09884 4.12387 4.13955 4.26783 4.30422 4.40513 4.43941 4.46671 4.55805 4.58929 4.65961 4.74887 4.80585 4.82011 4.83285 4.95336 5.00216 5.03347 5.09136 5.17875 5.23689 5.33045 5.39044 5.44706 5.50016 5.85769 5.89195 5.98098 6.06018 6.29834 6.51505 6.56856 6.85374 7.20599 7.36860 7.93001 8.73811 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.002421 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.129589 B =11560.934567 C =12634.325622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.537 5.537 3 C 0.053 3.947 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.102 4.102 7 C 0.071 3.929 8 H 0.073 0.927 9 C 0.513 3.487 10 O -0.564 6.564 11 N -0.713 5.713 12 C 0.137 3.863 13 C 0.005 3.995 14 N -0.638 5.638 15 C 0.064 3.936 16 C 0.451 3.549 17 O -0.610 6.610 18 N -0.592 5.592 19 C -0.328 4.328 20 H 0.057 0.943 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.259 1.259 25 H -0.273 1.273 26 H -0.233 1.233 27 C -0.146 4.146 28 C -0.135 4.135 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.024 0.976 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.413 0.587 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.347 0.653 44 H 0.113 0.887 45 H 0.068 0.932 46 H 0.388 0.612 47 H 0.279 0.721 48 H 0.118 0.882 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.244 9.625 14.663 32.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.263 5.263 3 C -0.074 4.074 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.140 4.140 7 C -0.041 4.041 8 H 0.091 0.909 9 C 0.300 3.700 10 O -0.442 6.442 11 N -0.366 5.366 12 C 0.011 3.989 13 C -0.088 4.088 14 N -0.269 5.269 15 C -0.068 4.068 16 C 0.238 3.762 17 O -0.495 6.495 18 N -0.234 5.234 19 C -0.457 4.457 20 H 0.075 0.925 21 C -0.213 4.213 22 N -0.573 5.573 23 Si 0.782 3.218 24 H -0.184 1.184 25 H -0.198 1.198 26 H -0.156 1.156 27 C -0.184 4.184 28 C -0.172 4.172 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.250 0.750 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.166 0.834 44 H 0.131 0.869 45 H 0.085 0.915 46 H 0.224 0.776 47 H 0.089 0.911 48 H 0.136 0.864 49 H 0.110 0.890 50 H 0.116 0.884 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 27.040 8.916 14.580 31.988 hybrid contribution -1.638 0.551 0.075 1.729 sum 25.402 9.467 14.655 30.816 Atomic orbital electron populations 1.22486 0.87248 1.02658 1.00649 1.61672 1.07851 1.14551 1.42212 1.22244 0.96666 0.87335 1.01170 1.21626 0.93281 1.01355 0.99251 1.21586 1.00877 0.93995 0.98963 1.21563 0.89915 0.99301 1.03267 1.21684 0.97641 0.90580 0.94203 0.90900 1.20898 0.78427 0.87733 0.82950 1.90676 1.46733 1.73443 1.33324 1.45963 1.61018 1.16577 1.13049 1.21269 0.98556 0.83469 0.95576 1.21668 0.91118 1.04623 0.91357 1.59857 1.00817 1.16759 1.49447 1.21546 0.88606 1.02490 0.94182 1.20909 0.84245 0.82140 0.88862 1.90538 1.83965 1.47328 1.27631 1.42060 1.09581 1.52784 1.18990 1.18998 0.89453 1.36417 1.00804 0.92508 1.26078 0.94086 0.98108 1.02990 1.69792 1.02774 1.46241 1.38517 0.85409 0.80203 0.78872 0.77344 1.18361 1.19776 1.15604 1.23186 1.01503 0.89961 1.03795 1.23144 0.92989 1.00160 1.00947 0.91998 0.90480 0.95704 0.90061 0.94253 0.91891 0.89510 0.89793 0.90979 0.92013 0.89031 0.75021 0.90280 0.92759 0.83429 0.86925 0.91463 0.77625 0.91107 0.86422 0.88979 0.88351 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.09 127.69 1.16 1.54 16 2 N -0.54 -10.33 4.51 -901.60 -4.07 -14.39 16 3 C 0.05 0.72 5.46 86.33 0.47 1.20 16 4 C -0.12 -1.20 6.09 30.65 0.19 -1.02 16 5 C -0.12 -1.00 6.00 30.67 0.18 -0.82 16 6 C -0.10 -1.21 5.36 30.65 0.16 -1.05 16 7 C 0.07 1.17 2.24 44.19 0.10 1.27 16 8 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 9 C 0.51 10.99 6.26 87.66 0.55 11.54 16 10 O -0.56 -17.01 14.52 -3.02 -0.04 -17.05 16 11 N -0.71 -11.93 5.46 -463.07 -2.53 -14.45 16 12 C 0.14 2.62 5.76 86.38 0.50 3.12 16 13 C 0.00 0.09 1.82 3.53 0.01 0.10 16 14 N -0.64 -17.83 6.08 -474.16 -2.88 -20.72 16 15 C 0.06 2.00 5.85 85.56 0.50 2.50 16 16 C 0.45 20.61 7.85 87.65 0.69 21.30 16 17 O -0.61 -33.98 15.97 -3.06 -0.05 -34.03 16 18 N -0.59 -28.51 5.09 -306.99 -1.56 -30.07 16 19 C -0.33 -19.43 10.16 84.04 0.85 -18.57 16 20 H 0.06 3.99 7.39 -2.91 -0.02 3.97 16 21 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 22 N -0.93 -56.70 13.96 21.66 0.30 -56.40 16 23 Si 0.96 39.64 27.74 68.60 1.90 41.54 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.23 -8.16 6.52 99.48 0.65 -7.51 16 27 C -0.15 -2.41 10.01 30.62 0.31 -2.11 16 28 C -0.13 -1.94 9.61 30.62 0.29 -1.65 16 29 H 0.06 1.67 5.63 -2.39 -0.01 1.65 16 30 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 31 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 33 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.59 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.41 4.93 8.07 -92.71 -0.75 4.19 16 41 H 0.08 1.44 7.88 -2.39 -0.02 1.42 16 42 H 0.05 1.29 6.63 -2.39 -0.02 1.28 16 43 H 0.35 10.13 8.85 -89.70 -0.79 9.34 16 44 H 0.11 3.05 8.00 -2.39 -0.02 3.03 16 45 H 0.07 1.87 6.96 -2.39 -0.02 1.86 16 46 H 0.39 15.69 5.76 -92.70 -0.53 15.15 16 47 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 48 H 0.12 1.46 8.03 -2.39 -0.02 1.44 16 49 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -81.24 406.52 -3.68 -84.91 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -1.18 Total: 43.63 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 6.43 Total: 17.03 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -10.74 Total: -136.03 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -0.09 Total: -51.08 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.90 Total: 41.54 kcal Total: -81.24 -3.68 -84.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323519629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.841 kcal (2) G-P(sol) polarization free energy of solvation -81.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds