Wall clock time and date at job start Tue Mar 31 2020 22:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47906 * 111.00163 * 2 1 4 4 C 1.53997 * 107.05871 * 214.15425 * 3 2 1 5 5 C 1.54593 * 105.14126 * 1.22735 * 4 3 2 6 6 H 1.08997 * 110.72026 * 263.60107 * 5 4 3 7 7 C 1.50694 * 110.72705 * 140.31194 * 5 4 3 8 8 O 1.21276 * 119.99905 * 0.02562 * 7 5 4 9 9 N 1.34770 * 120.00061 * 179.97438 * 7 5 4 10 10 C 1.47430 * 125.64980 * 359.70217 * 9 7 5 11 11 C 1.55131 * 104.72291 * 155.81217 * 10 9 7 12 12 C 1.55159 * 101.48653 * 37.29450 * 11 10 9 13 13 C 1.47027 * 125.65007 * 180.02562 * 9 7 5 14 14 H 1.09004 * 109.88096 * 300.44845 * 13 9 7 15 15 C 1.53004 * 109.88049 * 61.60966 * 13 9 7 16 16 N 1.46902 * 109.46909 * 304.99883 * 15 13 9 17 17 C 1.46903 * 110.99719 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.46946 * 180.02562 * 17 16 15 19 19 O 1.21294 * 120.00216 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99964 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00159 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00316 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00149 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99712 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00117 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46869 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47335 * 119.99546 * 25 23 21 28 28 H 1.48501 * 109.46819 * 239.99555 * 25 23 21 29 29 C 1.48529 * 111.00073 * 242.60690 * 2 1 3 30 30 H 1.09003 * 109.46989 * 59.87227 * 1 2 3 31 31 H 1.08997 * 109.46939 * 179.87406 * 1 2 3 32 32 H 1.08997 * 109.47220 * 299.87787 * 1 2 3 33 33 H 1.08998 * 109.91583 * 94.80499 * 3 2 1 34 34 H 1.09004 * 109.91554 * 333.51082 * 3 2 1 35 35 H 1.09005 * 110.30580 * 120.14185 * 4 3 2 36 36 H 1.09003 * 110.31005 * 242.30817 * 4 3 2 37 37 H 1.09003 * 110.36323 * 274.74036 * 10 9 7 38 38 H 1.08995 * 110.36622 * 37.06163 * 10 9 7 39 39 H 1.08999 * 111.19027 * 279.18930 * 11 10 9 40 40 H 1.09000 * 110.93664 * 155.28879 * 11 10 9 41 41 H 1.09000 * 110.71588 * 205.97092 * 12 11 10 42 42 H 1.09000 * 110.87472 * 82.76422 * 12 11 10 43 43 H 1.08994 * 109.47087 * 65.00388 * 15 13 9 44 44 H 1.08995 * 109.46797 * 185.00516 * 15 13 9 45 45 H 1.00901 * 111.00504 * 303.95747 * 16 15 13 46 46 H 1.08994 * 109.47261 * 300.00725 * 17 16 15 47 47 H 1.08997 * 109.46680 * 60.00663 * 17 16 15 48 48 H 0.97004 * 119.99502 * 0.02562 * 20 18 17 49 49 H 0.97004 * 120.00074 * 179.97438 * 24 23 21 50 50 H 1.08995 * 110.67216 * 41.28703 * 29 2 1 51 51 H 1.09004 * 110.80922 * 278.21881 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 -0.8265 5 6 3.4492 -0.0929 -1.3154 6 1 4.1115 -0.6540 -0.6562 7 6 3.9512 -0.1302 -2.7358 8 8 4.1764 0.9047 -3.3267 9 7 4.1508 -1.3135 -3.3491 10 6 3.9256 -2.6411 -2.7490 11 6 3.6844 -3.5841 -3.9570 12 6 4.6816 -3.0124 -4.9992 13 6 4.6356 -1.4943 -4.7254 14 1 3.9531 -1.0120 -5.4252 15 6 6.0373 -0.8972 -4.8659 16 7 6.0161 0.5078 -4.4378 17 6 7.3483 1.1151 -4.5587 18 6 7.2875 2.5528 -4.1110 19 8 6.2378 3.0250 -3.7284 20 7 8.3995 3.3139 -4.1358 21 6 8.3443 4.6216 -3.7281 22 1 7.4097 5.0421 -3.3874 23 6 9.4907 5.4065 -3.7542 24 7 10.6278 4.8950 -4.1692 25 14 9.4157 7.1882 -3.1979 26 1 8.0294 7.5183 -2.7801 27 1 10.3393 7.3885 -2.0526 28 1 9.8185 8.0742 -4.3195 29 6 2.0013 -0.6380 -1.2312 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3633 -1.0276 -0.0023 32 1 -0.3633 0.5119 0.8910 33 1 2.2122 1.6967 1.0212 34 1 1.2758 2.0562 -0.4571 35 1 3.2136 2.0430 -1.6766 36 1 4.1471 1.6454 -0.2023 37 1 4.8046 -2.9576 -2.1874 38 1 3.0482 -2.6214 -2.1026 39 1 2.6581 -3.5093 -4.3164 40 1 3.9330 -4.6144 -3.7026 41 1 4.3476 -3.2318 -6.0133 42 1 5.6851 -3.4038 -4.8319 43 1 6.7347 -1.4566 -4.2424 44 1 6.3540 -0.9550 -5.9072 45 1 5.3299 1.0341 -4.9577 46 1 8.0545 0.5695 -3.9329 47 1 7.6745 1.0713 -5.5978 48 1 9.2389 2.9363 -4.4422 49 1 11.4280 5.4430 -4.1878 50 1 1.4238 -0.3322 -2.1035 51 1 2.0040 -1.7237 -1.1345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324278293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:39 Heat of formation + Delta-G solvation = -32.394400 kcal Electronic energy + Delta-G solvation = -30973.831742 eV Core-core repulsion = 26909.068987 eV Total energy + Delta-G solvation = -4064.762756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39635 -38.74457 -37.95540 -36.93050 -34.99003 -33.63378 -32.36703 -31.47070 -31.06632 -30.20780 -28.88144 -26.71725 -25.97165 -24.68734 -23.61589 -22.67476 -21.57236 -21.27059 -20.43829 -19.08420 -18.56026 -17.75264 -17.24921 -16.64564 -16.05636 -15.94629 -15.30885 -14.92275 -14.72539 -14.41353 -14.20542 -14.05280 -13.94100 -13.78590 -13.65282 -13.26235 -13.22668 -13.12747 -13.00132 -12.40490 -12.31849 -12.08403 -11.82258 -11.53334 -11.48280 -11.47497 -11.41282 -11.28370 -11.20393 -11.07814 -10.99739 -10.92717 -10.88617 -10.54604 -10.25724 -10.09642 -9.36382 -9.15880 -8.62687 -8.47205 -8.10470 -7.80044 -7.52053 -6.28687 -3.68167 3.06117 3.17952 3.24330 3.33419 3.41564 3.89268 4.11791 4.19602 4.33146 4.35488 4.51201 4.58682 4.67953 4.77345 4.96149 4.99245 5.11503 5.18619 5.20500 5.23833 5.28275 5.31170 5.36665 5.38534 5.43722 5.52816 5.55064 5.58279 5.62238 5.62977 5.67726 5.69491 5.80827 5.88398 5.91854 5.97939 6.13282 6.18383 6.27387 6.33769 6.45443 6.53990 6.74058 6.81159 7.51541 7.67646 7.83763 8.07206 8.22649 8.75453 8.79000 9.33698 9.71968 10.26216 10.89955 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.003217 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.388657 B = 8701.736318 C =10929.687278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.116 4.116 5 C -0.102 4.102 6 H 0.099 0.901 7 C 0.525 3.475 8 O -0.453 6.453 9 N -0.616 5.616 10 C 0.096 3.904 11 C -0.132 4.132 12 C -0.126 4.126 13 C 0.143 3.857 14 H 0.069 0.931 15 C 0.047 3.953 16 N -0.640 5.640 17 C 0.046 3.954 18 C 0.445 3.555 19 O -0.562 6.562 20 N -0.574 5.574 21 C -0.291 4.291 22 H 0.102 0.898 23 C 0.018 3.982 24 N -0.907 5.907 25 Si 0.927 3.073 26 H -0.269 1.269 27 H -0.283 1.283 28 H -0.283 1.283 29 C 0.046 3.954 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.028 0.972 45 H 0.359 0.641 46 H 0.076 0.924 47 H 0.034 0.966 48 H 0.390 0.610 49 H 0.268 0.732 50 H 0.047 0.953 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.774 -20.122 2.471 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.093 4.093 4 C -0.154 4.154 5 C -0.124 4.124 6 H 0.117 0.883 7 C 0.310 3.690 8 O -0.321 6.321 9 N -0.354 5.354 10 C -0.028 4.028 11 C -0.170 4.170 12 C -0.165 4.165 13 C 0.039 3.961 14 H 0.087 0.913 15 C -0.084 4.084 16 N -0.277 5.277 17 C -0.087 4.087 18 C 0.230 3.770 19 O -0.444 6.444 20 N -0.213 5.213 21 C -0.421 4.421 22 H 0.119 0.881 23 C -0.183 4.183 24 N -0.550 5.550 25 Si 0.754 3.246 26 H -0.193 1.193 27 H -0.209 1.209 28 H -0.209 1.209 29 C -0.081 4.081 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.183 0.817 46 H 0.095 0.905 47 H 0.052 0.948 48 H 0.222 0.778 49 H 0.078 0.922 50 H 0.066 0.934 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.017 -19.390 3.576 25.403 hybrid contribution 0.633 1.004 -1.547 1.950 sum -15.384 -18.386 2.029 24.059 Atomic orbital electron populations 1.22512 0.87979 1.01947 1.00882 1.64760 1.08009 1.15750 1.36121 1.22950 0.96312 0.89149 1.00886 1.22343 0.97019 0.95359 1.00726 1.22092 0.96758 0.99045 0.94550 0.88281 1.19818 0.78819 0.82521 0.87795 1.90827 1.45279 1.30986 1.65005 1.48320 1.68259 1.05139 1.13669 1.22417 1.01088 0.83218 0.96043 1.22785 0.99851 0.98942 0.95401 1.22655 1.00403 0.93679 0.99754 1.21507 0.95011 0.95002 0.84605 0.91340 1.22453 0.96131 0.92075 0.97755 1.60691 1.05204 1.00257 1.61535 1.21709 0.92693 0.95541 0.98708 1.19866 0.85138 0.87198 0.84771 1.90579 1.29643 1.73629 1.50507 1.41888 1.09557 1.11163 1.58647 1.19729 0.96861 0.86205 1.39291 0.88053 1.25217 0.94844 1.00262 0.97930 1.69628 0.99854 1.37273 1.48199 0.85836 0.78433 0.82209 0.78084 1.19299 1.20880 1.20933 1.23242 0.93744 0.99539 0.91622 0.95351 0.91410 0.91257 0.90200 0.93589 0.88751 0.90434 0.91794 0.90594 0.90752 0.90099 0.90286 0.90372 0.91463 0.95450 0.81711 0.90549 0.94846 0.77751 0.92185 0.93441 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.40 60.06 0.56 0.70 16 2 N -0.52 -5.65 5.55 -238.71 -1.33 -6.98 16 3 C 0.03 0.41 6.70 -2.75 -0.02 0.39 16 4 C -0.12 -1.66 6.33 -25.37 -0.16 -1.82 16 5 C -0.10 -1.31 2.82 -89.91 -0.25 -1.56 16 6 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 7 C 0.52 7.88 6.73 -10.99 -0.07 7.80 16 8 O -0.45 -8.86 11.23 5.56 0.06 -8.80 16 9 N -0.62 -7.28 3.06 -162.87 -0.50 -7.78 16 10 C 0.10 0.78 6.65 -2.41 -0.02 0.76 16 11 C -0.13 -0.81 7.10 -24.46 -0.17 -0.99 16 12 C -0.13 -0.93 6.48 -24.90 -0.16 -1.09 16 13 C 0.14 1.60 3.30 -66.95 -0.22 1.38 16 14 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.05 0.63 5.30 -3.82 -0.02 0.60 16 16 N -0.64 -11.61 2.96 -115.06 -0.34 -11.95 16 17 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 18 C 0.45 11.33 7.82 -10.99 -0.09 11.24 16 19 O -0.56 -16.25 15.51 5.55 0.09 -16.17 16 20 N -0.57 -15.49 5.29 -10.96 -0.06 -15.55 16 21 C -0.29 -8.54 9.68 -14.93 -0.14 -8.68 16 22 H 0.10 3.13 7.16 -52.49 -0.38 2.75 16 23 C 0.02 0.50 5.50 -17.47 -0.10 0.41 16 24 N -0.91 -25.83 13.05 55.50 0.72 -25.10 16 25 Si 0.93 22.01 29.55 -169.99 -5.02 16.99 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 C 0.05 0.48 5.32 -1.90 -0.01 0.47 16 30 H 0.03 0.25 8.00 -51.93 -0.42 -0.17 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.53 7.73 -51.93 -0.40 0.13 16 35 H 0.09 1.64 6.85 -51.93 -0.36 1.28 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.54 5.04 -51.93 -0.26 0.28 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.55 7.77 -51.93 -0.40 0.15 16 43 H 0.07 0.89 8.02 -51.93 -0.42 0.47 16 44 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.36 7.24 6.94 -39.29 -0.27 6.96 16 46 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.39 10.11 7.90 -40.82 -0.32 9.79 16 49 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 50 H 0.05 0.53 7.87 -51.93 -0.41 0.12 16 51 H 0.09 0.73 6.01 -51.93 -0.31 0.42 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -34.49 396.25 -9.88 -44.37 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -8.58 Total: 14.50 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -0.90 Total: 10.49 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -1.50 Total: -67.35 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.15 Total: -24.97 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.49 -9.88 -44.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324278293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.974 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds