Wall clock time and date at job start Tue Mar 31 2020 22:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47906 * 111.00163 * 2 1 4 4 C 1.53997 * 107.05871 * 214.15425 * 3 2 1 5 5 C 1.54593 * 105.14126 * 1.22735 * 4 3 2 6 6 H 1.08997 * 110.72026 * 263.60107 * 5 4 3 7 7 C 1.50694 * 110.72705 * 140.31194 * 5 4 3 8 8 O 1.21276 * 119.99905 * 0.02562 * 7 5 4 9 9 N 1.34770 * 120.00061 * 179.97438 * 7 5 4 10 10 C 1.47430 * 125.64980 * 359.70217 * 9 7 5 11 11 C 1.55131 * 104.72291 * 155.81217 * 10 9 7 12 12 C 1.55159 * 101.48653 * 37.29450 * 11 10 9 13 13 C 1.47027 * 125.65007 * 180.02562 * 9 7 5 14 14 H 1.09004 * 109.88096 * 300.44845 * 13 9 7 15 15 C 1.53004 * 109.88049 * 61.60966 * 13 9 7 16 16 N 1.46902 * 109.46909 * 304.99883 * 15 13 9 17 17 C 1.46903 * 110.99719 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.46946 * 180.02562 * 17 16 15 19 19 O 1.21294 * 120.00216 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99964 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00159 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00316 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00149 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99712 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00117 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46869 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47335 * 119.99546 * 25 23 21 28 28 H 1.48501 * 109.46819 * 239.99555 * 25 23 21 29 29 C 1.48529 * 111.00073 * 242.60690 * 2 1 3 30 30 H 1.09003 * 109.46989 * 59.87227 * 1 2 3 31 31 H 1.08997 * 109.46939 * 179.87406 * 1 2 3 32 32 H 1.08997 * 109.47220 * 299.87787 * 1 2 3 33 33 H 1.08998 * 109.91583 * 94.80499 * 3 2 1 34 34 H 1.09004 * 109.91554 * 333.51082 * 3 2 1 35 35 H 1.09005 * 110.30580 * 120.14185 * 4 3 2 36 36 H 1.09003 * 110.31005 * 242.30817 * 4 3 2 37 37 H 1.09003 * 110.36323 * 274.74036 * 10 9 7 38 38 H 1.08995 * 110.36622 * 37.06163 * 10 9 7 39 39 H 1.08999 * 111.19027 * 279.18930 * 11 10 9 40 40 H 1.09000 * 110.93664 * 155.28879 * 11 10 9 41 41 H 1.09000 * 110.71588 * 205.97092 * 12 11 10 42 42 H 1.09000 * 110.87472 * 82.76422 * 12 11 10 43 43 H 1.08994 * 109.47087 * 65.00388 * 15 13 9 44 44 H 1.08995 * 109.46797 * 185.00516 * 15 13 9 45 45 H 1.00901 * 111.00504 * 303.95747 * 16 15 13 46 46 H 1.08994 * 109.47261 * 300.00725 * 17 16 15 47 47 H 1.08997 * 109.46680 * 60.00663 * 17 16 15 48 48 H 0.97004 * 119.99502 * 0.02562 * 20 18 17 49 49 H 0.97004 * 120.00074 * 179.97438 * 24 23 21 50 50 H 1.08995 * 110.67216 * 41.28703 * 29 2 1 51 51 H 1.09004 * 110.80922 * 278.21881 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 -0.8265 5 6 3.4492 -0.0929 -1.3154 6 1 4.1115 -0.6540 -0.6562 7 6 3.9512 -0.1302 -2.7358 8 8 4.1764 0.9047 -3.3267 9 7 4.1508 -1.3135 -3.3491 10 6 3.9256 -2.6411 -2.7490 11 6 3.6844 -3.5841 -3.9570 12 6 4.6816 -3.0124 -4.9992 13 6 4.6356 -1.4943 -4.7254 14 1 3.9531 -1.0120 -5.4252 15 6 6.0373 -0.8972 -4.8659 16 7 6.0161 0.5078 -4.4378 17 6 7.3483 1.1151 -4.5587 18 6 7.2875 2.5528 -4.1110 19 8 6.2378 3.0250 -3.7284 20 7 8.3995 3.3139 -4.1358 21 6 8.3443 4.6216 -3.7281 22 1 7.4097 5.0421 -3.3874 23 6 9.4907 5.4065 -3.7542 24 7 10.6278 4.8950 -4.1692 25 14 9.4157 7.1882 -3.1979 26 1 8.0294 7.5183 -2.7801 27 1 10.3393 7.3885 -2.0526 28 1 9.8185 8.0742 -4.3195 29 6 2.0013 -0.6380 -1.2312 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3633 -1.0276 -0.0023 32 1 -0.3633 0.5119 0.8910 33 1 2.2122 1.6967 1.0212 34 1 1.2758 2.0562 -0.4571 35 1 3.2136 2.0430 -1.6766 36 1 4.1471 1.6454 -0.2023 37 1 4.8046 -2.9576 -2.1874 38 1 3.0482 -2.6214 -2.1026 39 1 2.6581 -3.5093 -4.3164 40 1 3.9330 -4.6144 -3.7026 41 1 4.3476 -3.2318 -6.0133 42 1 5.6851 -3.4038 -4.8319 43 1 6.7347 -1.4566 -4.2424 44 1 6.3540 -0.9550 -5.9072 45 1 5.3299 1.0341 -4.9577 46 1 8.0545 0.5695 -3.9329 47 1 7.6745 1.0713 -5.5978 48 1 9.2389 2.9363 -4.4422 49 1 11.4280 5.4430 -4.1878 50 1 1.4238 -0.3322 -2.1035 51 1 2.0040 -1.7237 -1.1345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324278293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:38 Heat of formation + Delta-G solvation = -58.672394 kcal Electronic energy + Delta-G solvation = -30974.971242 eV Core-core repulsion = 26909.068987 eV Total energy + Delta-G solvation = -4065.902255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.39118 -40.07625 -39.54140 -37.97908 -36.46282 -35.68758 -33.38174 -33.21058 -32.32667 -31.26182 -29.85835 -28.23261 -26.81288 -26.30220 -24.83511 -23.85661 -22.31381 -22.15421 -21.43564 -20.96790 -19.90837 -19.55828 -18.38253 -17.72154 -17.50615 -16.97489 -16.78884 -16.33372 -16.17488 -15.87456 -15.59420 -15.23267 -14.99921 -14.97693 -14.76555 -14.66639 -14.31005 -14.03109 -13.94370 -13.81387 -13.50665 -13.36388 -13.26482 -12.99838 -12.78638 -12.56760 -12.49501 -12.41788 -12.41304 -12.29704 -12.15000 -12.14359 -11.90641 -11.78780 -11.67667 -11.50065 -11.49016 -10.34085 -10.24017 -9.98269 -9.52414 -9.44922 -8.83738 -8.46289 -5.94323 1.34678 1.38089 1.53438 2.00471 2.10147 2.19635 2.28929 3.01082 3.04921 3.20519 3.51972 3.56016 3.63367 3.73596 3.85651 3.98936 4.00599 4.18540 4.25562 4.30321 4.33393 4.38155 4.42655 4.49081 4.51700 4.53270 4.55000 4.57962 4.64863 4.70759 4.77300 4.81988 4.92964 5.00182 5.01958 5.04592 5.13264 5.16928 5.18393 5.20614 5.40132 5.43231 5.64668 5.78955 5.94589 5.99091 6.22779 6.59186 6.63685 6.84608 7.15234 7.59264 7.65917 8.17728 8.72098 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.003217 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.388657 B = 8701.736318 C =10929.687278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.525 5.525 3 C 0.042 3.958 4 C -0.118 4.118 5 C -0.099 4.099 6 H 0.108 0.892 7 C 0.517 3.483 8 O -0.511 6.511 9 N -0.614 5.614 10 C 0.088 3.912 11 C -0.120 4.120 12 C -0.117 4.117 13 C 0.138 3.862 14 H 0.054 0.946 15 C 0.047 3.953 16 N -0.651 5.651 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.602 6.602 20 N -0.581 5.581 21 C -0.329 4.329 22 H 0.074 0.926 23 C -0.016 4.016 24 N -0.924 5.924 25 Si 0.993 3.007 26 H -0.276 1.276 27 H -0.269 1.269 28 H -0.269 1.269 29 C 0.058 3.942 30 H 0.024 0.976 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.042 0.958 45 H 0.345 0.655 46 H 0.091 0.909 47 H 0.053 0.947 48 H 0.393 0.607 49 H 0.277 0.723 50 H 0.038 0.962 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.150 -22.885 2.774 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.249 5.249 3 C -0.086 4.086 4 C -0.157 4.157 5 C -0.120 4.120 6 H 0.126 0.874 7 C 0.304 3.696 8 O -0.383 6.383 9 N -0.350 5.350 10 C -0.034 4.034 11 C -0.158 4.158 12 C -0.155 4.155 13 C 0.034 3.966 14 H 0.072 0.928 15 C -0.083 4.083 16 N -0.287 5.287 17 C -0.072 4.072 18 C 0.226 3.774 19 O -0.486 6.486 20 N -0.220 5.220 21 C -0.459 4.459 22 H 0.092 0.908 23 C -0.215 4.215 24 N -0.566 5.566 25 Si 0.817 3.183 26 H -0.201 1.201 27 H -0.194 1.194 28 H -0.194 1.194 29 C -0.070 4.070 30 H 0.043 0.957 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.167 0.833 46 H 0.109 0.891 47 H 0.071 0.929 48 H 0.227 0.773 49 H 0.086 0.914 50 H 0.056 0.944 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.374 -22.242 3.873 27.889 hybrid contribution 0.749 1.819 -1.659 2.573 sum -15.625 -20.422 2.214 25.809 Atomic orbital electron populations 1.22602 0.86346 1.03335 1.01142 1.64821 1.09527 1.14551 1.36037 1.22855 0.94848 0.90247 1.00652 1.22234 0.98016 0.96047 0.99420 1.22062 0.98627 0.97934 0.93425 0.87428 1.20213 0.78219 0.82763 0.88417 1.90819 1.47984 1.33152 1.66331 1.48378 1.66827 1.05737 1.14055 1.22709 1.01973 0.81494 0.97230 1.22794 0.99830 0.99596 0.93589 1.22649 1.01529 0.90165 1.01160 1.21648 0.93163 0.97708 0.84101 0.92793 1.22589 0.97959 0.89229 0.98541 1.60687 1.03550 1.02220 1.62239 1.21552 0.94289 0.91601 0.99724 1.20910 0.83972 0.89265 0.83290 1.90557 1.31046 1.75072 1.51971 1.41951 1.10177 1.10825 1.59018 1.19655 0.96576 0.87862 1.41761 0.90821 1.26033 0.94049 1.04228 0.97178 1.69687 1.00294 1.38854 1.47743 0.84875 0.78159 0.76987 0.78313 1.20063 1.19381 1.19405 1.23215 0.91576 1.00908 0.91252 0.95733 0.89439 0.90403 0.89362 0.93774 0.92701 0.92063 0.91166 0.89315 0.90187 0.87408 0.88653 0.89462 0.90883 0.93999 0.83329 0.89105 0.92887 0.77308 0.91387 0.94356 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.40 127.69 1.20 1.41 16 2 N -0.53 -10.69 5.55 -909.16 -5.05 -15.74 16 3 C 0.04 1.01 6.70 86.45 0.58 1.59 16 4 C -0.12 -3.68 6.33 31.47 0.20 -3.48 16 5 C -0.10 -2.57 2.82 -10.34 -0.03 -2.59 16 6 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 7 C 0.52 16.07 6.73 87.66 0.59 16.66 16 8 O -0.51 -21.46 11.23 -3.02 -0.03 -21.49 16 9 N -0.61 -14.00 3.06 -787.60 -2.41 -16.42 16 10 C 0.09 1.17 6.65 86.93 0.58 1.75 16 11 C -0.12 -1.00 7.10 32.06 0.23 -0.78 16 12 C -0.12 -1.34 6.48 31.78 0.21 -1.13 16 13 C 0.14 2.93 3.30 45.34 0.15 3.08 16 14 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 15 C 0.05 1.21 5.30 86.30 0.46 1.67 16 16 N -0.65 -24.31 2.96 -517.93 -1.53 -25.84 16 17 C 0.06 2.44 6.17 85.56 0.53 2.97 16 18 C 0.44 23.34 7.82 87.66 0.69 24.03 16 19 O -0.60 -37.11 15.51 -3.07 -0.05 -37.16 16 20 N -0.58 -32.55 5.29 -306.98 -1.62 -34.17 16 21 C -0.33 -20.06 9.68 84.04 0.81 -19.25 16 22 H 0.07 4.83 7.16 -2.91 -0.02 4.80 16 23 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 24 N -0.92 -52.58 13.05 21.66 0.28 -52.30 16 25 Si 0.99 45.50 29.55 68.60 2.03 47.53 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 29 C 0.06 1.14 5.32 86.65 0.46 1.61 16 30 H 0.02 0.40 8.00 -2.39 -0.02 0.38 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.07 7.73 -2.38 -0.02 1.05 16 35 H 0.05 2.14 6.85 -2.38 -0.02 2.12 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.96 5.04 -2.39 -0.01 0.94 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 0.89 7.77 -2.39 -0.02 0.87 16 43 H 0.07 1.81 8.02 -2.39 -0.02 1.79 16 44 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 45 H 0.34 14.70 6.94 -89.69 -0.62 14.08 16 46 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 47 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.39 20.96 7.90 -92.71 -0.73 20.23 16 49 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16 50 H 0.04 0.83 7.87 -2.39 -0.02 0.82 16 51 H 0.11 1.59 6.01 -2.39 -0.01 1.57 16 Total: -1.00 -79.64 396.25 -1.69 -81.34 By element: Atomic # 1 Polarization: 47.57 SS G_CDS: -0.41 Total: 47.16 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 7.11 Total: 27.09 kcal Atomic # 7 Polarization: -134.12 SS G_CDS: -10.34 Total: -144.46 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -0.08 Total: -58.66 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -79.64 -1.69 -81.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324278293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.663 kcal (2) G-P(sol) polarization free energy of solvation -79.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds