Wall clock time and date at job start Tue Mar 31 2020 22:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48528 * 110.99989 * 2 1 4 4 C 1.55104 * 103.28652 * 200.33391 * 3 2 1 5 5 C 1.54598 * 102.84374 * 37.30870 * 4 3 2 6 6 H 1.08998 * 110.30826 * 97.11683 * 5 4 3 7 7 C 1.50702 * 110.30872 * 219.18760 * 5 4 3 8 8 O 1.21281 * 119.99807 * 358.61115 * 7 5 4 9 9 N 1.34774 * 119.99980 * 178.61031 * 7 5 4 10 10 C 1.46499 * 119.99952 * 179.97438 * 9 7 5 11 11 H 1.08997 * 112.85165 * 336.20197 * 10 9 7 12 12 C 1.53956 * 113.53500 * 107.50494 * 10 9 7 13 13 C 1.53783 * 87.01786 * 89.18878 * 12 10 9 14 14 H 1.08996 * 113.61594 * 270.77057 * 13 12 10 15 15 C 1.53004 * 113.61544 * 139.94978 * 13 12 10 16 16 N 1.46901 * 109.46916 * 85.86237 * 15 13 12 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 15 19 19 O 1.21297 * 120.00124 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.07990 * 119.99768 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99812 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99864 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99403 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47056 * 90.00522 * 25 23 21 27 27 H 1.48505 * 109.46897 * 209.99554 * 25 23 21 28 28 H 1.48495 * 109.47527 * 330.00091 * 25 23 21 29 29 C 1.53781 * 113.61585 * 205.00060 * 10 9 7 30 30 C 1.47904 * 110.99856 * 242.60660 * 2 1 3 31 31 H 1.09003 * 109.47465 * 177.39488 * 1 2 3 32 32 H 1.08998 * 109.46860 * 297.39259 * 1 2 3 33 33 H 1.08994 * 109.47346 * 57.39363 * 1 2 3 34 34 H 1.08996 * 110.67239 * 318.71699 * 3 2 1 35 35 H 1.09001 * 110.66233 * 81.68375 * 3 2 1 36 36 H 1.08998 * 110.70969 * 279.00307 * 4 3 2 37 37 H 1.08996 * 110.81441 * 155.66478 * 4 3 2 38 38 H 0.97003 * 120.00154 * 0.02562 * 9 7 5 39 39 H 1.08995 * 113.66692 * 334.66472 * 12 10 9 40 40 H 1.09005 * 113.61283 * 203.70853 * 12 10 9 41 41 H 1.09004 * 109.46889 * 325.86618 * 15 13 12 42 42 H 1.08995 * 109.47384 * 205.86258 * 15 13 12 43 43 H 1.00901 * 111.00067 * 303.95263 * 16 15 13 44 44 H 1.09001 * 109.46798 * 300.00327 * 17 16 15 45 45 H 1.08998 * 109.46961 * 60.00043 * 17 16 15 46 46 H 0.97009 * 119.99629 * 359.97438 * 20 18 17 47 47 H 0.97004 * 119.99642 * 179.97438 * 24 23 21 48 48 H 1.09002 * 113.61590 * 156.33935 * 29 10 9 49 49 H 1.09003 * 113.61062 * 25.43318 * 29 10 9 50 50 H 1.08996 * 109.91836 * 26.48983 * 30 2 1 51 51 H 1.08997 * 109.91826 * 265.19597 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4504 1.2122 -0.5245 5 6 3.2982 0.1054 -1.5932 6 1 3.2142 0.5472 -2.5861 7 6 4.4716 -0.8387 -1.5392 8 8 5.3690 -0.6459 -0.7465 9 7 4.5237 -1.8972 -2.3719 10 6 5.6647 -2.8146 -2.3199 11 1 6.5607 -2.3527 -1.9053 12 6 5.3268 -4.1812 -1.6965 13 6 4.9519 -4.6449 -3.1140 14 1 3.9084 -4.4635 -3.3711 15 6 5.4023 -6.0724 -3.4311 16 7 4.3837 -7.0223 -2.9643 17 6 4.7834 -8.4064 -3.2520 18 6 3.7160 -9.3499 -2.7606 19 8 2.7201 -8.9124 -2.2239 20 7 3.8680 -10.6798 -2.9173 21 6 2.8967 -11.5382 -2.4708 22 1 2.0101 -11.1487 -1.9930 23 6 3.0538 -12.9094 -2.6320 24 7 4.1331 -13.3833 -3.2129 25 14 1.7307 -14.0789 -2.0228 26 1 0.7425 -14.3157 -3.1058 27 1 2.3530 -15.3688 -1.6300 28 1 1.0449 -13.4822 -0.8486 29 6 5.9125 -3.5649 -3.6391 30 6 1.9990 -0.6353 -1.2260 31 1 -0.3634 -1.0266 -0.0467 32 1 -0.3633 0.4728 0.9124 33 1 -0.3634 0.5537 -0.8656 34 1 1.4237 2.0205 -0.6728 35 1 2.0014 1.7986 1.0092 36 1 4.1137 0.8861 0.2766 37 1 3.8131 2.1360 -0.9751 38 1 3.8061 -2.0511 -3.0062 39 1 4.4815 -4.1515 -1.0090 40 1 6.1925 -4.6983 -1.2825 41 1 6.3470 -6.2757 -2.9267 42 1 5.5344 -6.1811 -4.5075 43 1 4.1964 -6.8974 -1.9807 44 1 4.9115 -8.5315 -4.3272 45 1 5.7236 -8.6256 -2.7461 46 1 4.6644 -11.0297 -3.3469 47 1 4.2428 -14.3406 -3.3251 48 1 6.9386 -3.9133 -3.7572 49 1 5.5394 -3.0384 -4.5176 50 1 1.2758 -0.5402 -2.0359 51 1 2.2122 -1.6873 -1.0366 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330700249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:40 Heat of formation + Delta-G solvation = -47.394480 kcal Electronic energy + Delta-G solvation = -28644.248282 eV Core-core repulsion = 24578.835074 eV Total energy + Delta-G solvation = -4065.413208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83654 -39.46677 -38.27844 -37.92890 -35.22608 -33.88671 -33.38528 -32.52425 -31.20834 -29.61928 -28.39672 -26.32474 -25.96718 -25.54033 -23.88117 -22.89705 -21.93294 -21.59419 -20.32149 -19.52343 -19.08845 -17.88514 -17.72189 -16.56168 -16.48047 -16.13745 -15.71238 -15.48975 -15.13210 -14.76295 -14.65234 -14.50746 -14.23031 -14.05509 -13.92451 -13.63789 -13.47984 -13.11366 -12.97876 -12.70001 -12.61858 -12.35299 -12.30097 -11.97850 -11.90171 -11.70106 -11.58601 -11.53450 -11.48871 -11.20958 -11.05775 -10.95656 -10.62600 -10.38839 -10.27635 -10.20033 -10.05732 -9.50002 -9.28278 -8.88473 -8.44517 -8.03601 -7.94619 -6.40879 -3.81589 2.32370 2.80249 3.18523 3.26991 3.33053 3.55917 3.92248 4.03124 4.07237 4.14359 4.25865 4.28887 4.43595 4.56006 4.68591 4.78613 4.82568 4.84347 4.87821 4.98426 5.05974 5.15013 5.15289 5.26246 5.33763 5.38084 5.43446 5.46977 5.50513 5.51667 5.53138 5.57073 5.60722 5.73340 5.80652 5.86245 5.90053 5.99873 6.01247 6.08675 6.28246 6.38317 6.41710 6.54731 7.19877 7.25726 7.56058 7.70030 7.93745 8.07537 8.62471 9.18883 9.55527 10.07141 10.76894 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.001771 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.469317 B =15805.290721 C =17342.390131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.520 5.520 3 C 0.033 3.967 4 C -0.109 4.109 5 C -0.122 4.122 6 H 0.102 0.898 7 C 0.527 3.473 8 O -0.534 6.534 9 N -0.711 5.711 10 C 0.119 3.881 11 H 0.101 0.899 12 C -0.150 4.150 13 C -0.105 4.105 14 H 0.099 0.901 15 C 0.068 3.932 16 N -0.669 5.669 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.139 4.139 30 C 0.044 3.956 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.402 0.598 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.349 0.651 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.095 0.905 49 H 0.073 0.927 50 H 0.056 0.944 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.548 28.645 -0.917 28.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.244 5.244 3 C -0.095 4.095 4 C -0.148 4.148 5 C -0.144 4.144 6 H 0.120 0.880 7 C 0.313 3.687 8 O -0.410 6.410 9 N -0.362 5.362 10 C 0.014 3.986 11 H 0.119 0.881 12 C -0.189 4.189 13 C -0.124 4.124 14 H 0.117 0.883 15 C -0.061 4.061 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.178 4.178 30 C -0.085 4.085 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.236 0.764 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.168 0.832 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.113 0.887 49 H 0.091 0.909 50 H 0.074 0.926 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.345 28.634 -0.107 28.666 hybrid contribution -0.118 -0.844 -0.543 1.011 sum 1.227 27.791 -0.651 27.825 Atomic orbital electron populations 1.22550 0.87334 1.02498 1.01034 1.64741 1.08456 1.15058 1.36160 1.23332 0.94824 0.89780 1.01558 1.22506 0.96997 0.96935 0.98322 1.22223 0.93741 0.96450 1.02016 0.87968 1.20358 0.87367 0.81008 0.79922 1.90694 1.39202 1.73630 1.37457 1.45685 1.24223 1.26811 1.39446 1.21868 0.89767 0.89380 0.97577 0.88113 1.23546 1.02368 0.95866 0.97086 1.22616 1.00053 0.93749 0.95951 0.88309 1.21950 0.92658 0.91040 1.00496 1.60094 1.43005 1.02238 1.24737 1.21673 0.96252 0.88850 1.01497 1.19833 0.88914 0.83147 0.85484 1.90520 1.31539 1.76829 1.47872 1.41871 1.21032 1.04274 1.52931 1.19706 1.00812 0.86824 1.35519 0.87934 1.25266 0.97768 0.97649 0.97325 1.69614 1.26889 1.14483 1.43358 0.85852 0.80137 0.79093 0.79169 1.20404 1.20947 1.19428 1.23339 1.00965 0.96820 0.96669 1.22874 0.93903 0.99881 0.91793 0.90922 0.91013 0.95277 0.93603 0.89543 0.88549 0.90505 0.76380 0.90804 0.89294 0.95407 0.91087 0.83202 0.89679 0.93973 0.77467 0.91897 0.88704 0.90860 0.92605 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.40 60.06 0.56 0.66 16 2 N -0.52 -4.35 5.55 -238.61 -1.33 -5.68 16 3 C 0.03 0.22 6.56 -1.81 -0.01 0.21 16 4 C -0.11 -0.83 6.42 -24.78 -0.16 -0.98 16 5 C -0.12 -0.88 3.38 -90.41 -0.31 -1.18 16 6 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 7 C 0.53 5.17 6.94 -10.99 -0.08 5.09 16 8 O -0.53 -7.34 15.03 5.56 0.08 -7.26 16 9 N -0.71 -5.70 5.15 -52.93 -0.27 -5.97 16 10 C 0.12 1.06 4.33 -67.03 -0.29 0.77 16 11 H 0.10 1.03 7.46 -51.93 -0.39 0.64 16 12 C -0.15 -1.48 7.44 -25.83 -0.19 -1.67 16 13 C -0.11 -1.00 3.77 -89.80 -0.34 -1.34 16 14 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 15 C 0.07 0.80 5.51 -3.82 -0.02 0.77 16 16 N -0.67 -10.72 6.13 -115.05 -0.70 -11.42 16 17 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 18 C 0.44 10.52 7.82 -10.99 -0.09 10.44 16 19 O -0.58 -16.02 15.78 5.54 0.09 -15.93 16 20 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 25 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 C -0.14 -1.04 7.39 -25.92 -0.19 -1.23 16 30 C 0.04 0.32 6.32 -2.75 -0.02 0.31 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.17 8.00 -51.93 -0.42 -0.25 16 34 H 0.05 0.26 7.96 -51.93 -0.41 -0.15 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.97 6.89 -51.93 -0.36 0.61 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.40 2.37 8.70 -40.82 -0.36 2.01 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.87 7.92 -51.93 -0.41 0.46 16 41 H 0.03 0.31 7.88 -51.93 -0.41 -0.10 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.35 5.88 8.43 -39.29 -0.33 5.55 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.33 7.73 -51.93 -0.40 -0.07 16 51 H 0.09 0.74 7.62 -51.93 -0.40 0.35 16 LS Contribution 413.09 15.07 6.23 6.23 Total: -1.00 -33.90 413.09 -10.44 -44.34 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -8.78 Total: 13.35 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.40 Total: 4.62 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -1.64 Total: -61.50 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.90 -10.44 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330700249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.052 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds