Wall clock time and date at job start Tue Mar 31 2020 22:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48528 * 110.99989 * 2 1 4 4 C 1.55104 * 103.28652 * 200.33391 * 3 2 1 5 5 C 1.54598 * 102.84374 * 37.30870 * 4 3 2 6 6 H 1.08998 * 110.30826 * 97.11683 * 5 4 3 7 7 C 1.50702 * 110.30872 * 219.18760 * 5 4 3 8 8 O 1.21281 * 119.99807 * 358.61115 * 7 5 4 9 9 N 1.34774 * 119.99980 * 178.61031 * 7 5 4 10 10 C 1.46499 * 119.99952 * 179.97438 * 9 7 5 11 11 H 1.08997 * 112.85165 * 336.20197 * 10 9 7 12 12 C 1.53956 * 113.53500 * 107.50494 * 10 9 7 13 13 C 1.53783 * 87.01786 * 89.18878 * 12 10 9 14 14 H 1.08996 * 113.61594 * 270.77057 * 13 12 10 15 15 C 1.53004 * 113.61544 * 139.94978 * 13 12 10 16 16 N 1.46901 * 109.46916 * 85.86237 * 15 13 12 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 15 19 19 O 1.21297 * 120.00124 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.07990 * 119.99768 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99812 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99864 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99403 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47056 * 90.00522 * 25 23 21 27 27 H 1.48505 * 109.46897 * 209.99554 * 25 23 21 28 28 H 1.48495 * 109.47527 * 330.00091 * 25 23 21 29 29 C 1.53781 * 113.61585 * 205.00060 * 10 9 7 30 30 C 1.47904 * 110.99856 * 242.60660 * 2 1 3 31 31 H 1.09003 * 109.47465 * 177.39488 * 1 2 3 32 32 H 1.08998 * 109.46860 * 297.39259 * 1 2 3 33 33 H 1.08994 * 109.47346 * 57.39363 * 1 2 3 34 34 H 1.08996 * 110.67239 * 318.71699 * 3 2 1 35 35 H 1.09001 * 110.66233 * 81.68375 * 3 2 1 36 36 H 1.08998 * 110.70969 * 279.00307 * 4 3 2 37 37 H 1.08996 * 110.81441 * 155.66478 * 4 3 2 38 38 H 0.97003 * 120.00154 * 0.02562 * 9 7 5 39 39 H 1.08995 * 113.66692 * 334.66472 * 12 10 9 40 40 H 1.09005 * 113.61283 * 203.70853 * 12 10 9 41 41 H 1.09004 * 109.46889 * 325.86618 * 15 13 12 42 42 H 1.08995 * 109.47384 * 205.86258 * 15 13 12 43 43 H 1.00901 * 111.00067 * 303.95263 * 16 15 13 44 44 H 1.09001 * 109.46798 * 300.00327 * 17 16 15 45 45 H 1.08998 * 109.46961 * 60.00043 * 17 16 15 46 46 H 0.97009 * 119.99629 * 359.97438 * 20 18 17 47 47 H 0.97004 * 119.99642 * 179.97438 * 24 23 21 48 48 H 1.09002 * 113.61590 * 156.33935 * 29 10 9 49 49 H 1.09003 * 113.61062 * 25.43318 * 29 10 9 50 50 H 1.08996 * 109.91836 * 26.48983 * 30 2 1 51 51 H 1.08997 * 109.91826 * 265.19597 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4504 1.2122 -0.5245 5 6 3.2982 0.1054 -1.5932 6 1 3.2142 0.5472 -2.5861 7 6 4.4716 -0.8387 -1.5392 8 8 5.3690 -0.6459 -0.7465 9 7 4.5237 -1.8972 -2.3719 10 6 5.6647 -2.8146 -2.3199 11 1 6.5607 -2.3527 -1.9053 12 6 5.3268 -4.1812 -1.6965 13 6 4.9519 -4.6449 -3.1140 14 1 3.9084 -4.4635 -3.3711 15 6 5.4023 -6.0724 -3.4311 16 7 4.3837 -7.0223 -2.9643 17 6 4.7834 -8.4064 -3.2520 18 6 3.7160 -9.3499 -2.7606 19 8 2.7201 -8.9124 -2.2239 20 7 3.8680 -10.6798 -2.9173 21 6 2.8967 -11.5382 -2.4708 22 1 2.0101 -11.1487 -1.9930 23 6 3.0538 -12.9094 -2.6320 24 7 4.1331 -13.3833 -3.2129 25 14 1.7307 -14.0789 -2.0228 26 1 0.7425 -14.3157 -3.1058 27 1 2.3530 -15.3688 -1.6300 28 1 1.0449 -13.4822 -0.8486 29 6 5.9125 -3.5649 -3.6391 30 6 1.9990 -0.6353 -1.2260 31 1 -0.3634 -1.0266 -0.0467 32 1 -0.3633 0.4728 0.9124 33 1 -0.3634 0.5537 -0.8656 34 1 1.4237 2.0205 -0.6728 35 1 2.0014 1.7986 1.0092 36 1 4.1137 0.8861 0.2766 37 1 3.8131 2.1360 -0.9751 38 1 3.8061 -2.0511 -3.0062 39 1 4.4815 -4.1515 -1.0090 40 1 6.1925 -4.6983 -1.2825 41 1 6.3470 -6.2757 -2.9267 42 1 5.5344 -6.1811 -4.5075 43 1 4.1964 -6.8974 -1.9807 44 1 4.9115 -8.5315 -4.3272 45 1 5.7236 -8.6256 -2.7461 46 1 4.6644 -11.0297 -3.3469 47 1 4.2428 -14.3406 -3.3251 48 1 6.9386 -3.9133 -3.7572 49 1 5.5394 -3.0384 -4.5176 50 1 1.2758 -0.5402 -2.0359 51 1 2.2122 -1.6873 -1.0366 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330700249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:39 Heat of formation + Delta-G solvation = -74.806586 kcal Electronic energy + Delta-G solvation = -28645.436960 eV Core-core repulsion = 24578.835074 eV Total energy + Delta-G solvation = -4066.601886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56784 -40.30965 -39.94917 -38.74528 -36.53631 -35.77574 -34.29310 -33.27565 -33.11804 -30.31348 -29.53098 -27.33970 -26.76349 -26.63443 -25.33308 -23.71931 -22.78526 -22.16220 -21.13415 -20.98044 -20.14995 -19.86369 -18.45037 -17.85121 -17.19239 -17.09461 -16.98737 -16.50894 -16.31511 -16.06032 -15.70810 -15.55528 -15.35870 -15.19413 -14.96537 -14.82376 -14.38898 -14.17184 -14.03290 -13.69056 -13.50658 -13.36612 -13.23994 -13.09395 -12.95049 -12.85085 -12.61426 -12.50476 -12.42903 -12.42549 -12.13022 -12.12537 -11.81558 -11.77609 -11.51322 -11.42610 -11.06878 -10.85795 -10.34571 -10.03772 -10.02110 -9.42124 -9.30322 -8.47176 -5.95975 1.37770 1.41498 1.54364 1.56894 2.04778 2.13185 2.29007 2.93513 3.03456 3.20043 3.43924 3.49971 3.57007 3.57523 3.76666 3.84547 3.95676 3.99200 4.25687 4.30286 4.33154 4.34074 4.45735 4.48814 4.50534 4.53496 4.56071 4.64241 4.70385 4.79321 4.82103 4.82409 4.87548 4.91017 4.96217 4.97769 5.02648 5.08874 5.19930 5.22810 5.32971 5.40453 5.66870 5.85884 5.90731 6.03071 6.13404 6.42127 6.53340 6.59771 7.12075 7.22988 7.55737 8.11184 8.70158 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.001771 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.469317 B =15805.290721 C =17342.390131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.549 5.549 3 C 0.037 3.963 4 C -0.110 4.110 5 C -0.115 4.115 6 H 0.134 0.866 7 C 0.523 3.477 8 O -0.580 6.580 9 N -0.700 5.700 10 C 0.118 3.882 11 H 0.087 0.913 12 C -0.153 4.153 13 C -0.100 4.100 14 H 0.094 0.906 15 C 0.069 3.931 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.274 1.274 29 C -0.118 4.118 30 C 0.046 3.954 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.414 0.586 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.341 0.659 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.107 0.893 49 H 0.091 0.909 50 H 0.077 0.923 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.558 29.381 -2.613 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.274 5.274 3 C -0.090 4.090 4 C -0.149 4.149 5 C -0.137 4.137 6 H 0.152 0.848 7 C 0.311 3.689 8 O -0.460 6.460 9 N -0.351 5.351 10 C 0.013 3.987 11 H 0.105 0.895 12 C -0.192 4.192 13 C -0.118 4.118 14 H 0.112 0.888 15 C -0.059 4.059 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.157 4.157 30 C -0.082 4.082 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.251 0.749 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.159 0.841 44 H 0.123 0.877 45 H 0.082 0.918 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.125 0.875 49 H 0.109 0.891 50 H 0.095 0.905 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.365 29.367 -1.851 29.457 hybrid contribution -0.106 -1.049 0.016 1.054 sum 1.259 28.318 -1.835 28.406 Atomic orbital electron populations 1.22548 0.86480 1.02410 1.01835 1.64698 1.09507 1.16123 1.37033 1.23325 0.94356 0.89372 1.01976 1.22476 0.96953 0.97753 0.97675 1.22260 0.92265 0.95654 1.03496 0.84826 1.20878 0.87478 0.81408 0.79186 1.90676 1.41099 1.74856 1.39336 1.45629 1.24292 1.26062 1.39122 1.21824 0.89546 0.88855 0.98515 0.89490 1.23560 1.01652 0.96902 0.97103 1.22540 1.00364 0.93200 0.95743 0.88810 1.22072 0.91981 0.90823 1.01069 1.60125 1.45086 1.01943 1.24299 1.21545 0.94419 0.88368 1.02501 1.20939 0.89554 0.83242 0.83889 1.90488 1.33713 1.77503 1.49394 1.41943 1.20833 1.04912 1.53366 1.19666 1.01275 0.88104 1.37390 0.90389 1.26052 0.99838 0.98507 0.96932 1.69672 1.27875 1.15204 1.43291 0.84921 0.77644 0.77181 0.78543 1.19574 1.19492 1.19844 1.23252 1.01074 0.95084 0.96249 1.22839 0.94391 0.98784 0.92195 0.91522 0.90704 0.93904 0.91687 0.89711 0.91739 0.88765 0.74904 0.92819 0.89275 0.94319 0.89942 0.84137 0.87664 0.91829 0.76944 0.91283 0.87460 0.89074 0.90505 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 127.69 1.20 1.39 16 2 N -0.55 -8.83 5.55 -908.84 -5.05 -13.88 16 3 C 0.04 0.47 6.56 86.71 0.57 1.04 16 4 C -0.11 -1.60 6.42 31.86 0.20 -1.40 16 5 C -0.12 -1.50 3.38 -10.66 -0.04 -1.54 16 6 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 7 C 0.52 10.15 6.94 87.66 0.61 10.76 16 8 O -0.58 -16.54 15.03 -3.03 -0.05 -16.58 16 9 N -0.70 -10.62 5.15 -439.76 -2.26 -12.88 16 10 C 0.12 2.00 4.33 45.58 0.20 2.19 16 11 H 0.09 1.76 7.46 -2.39 -0.02 1.75 16 12 C -0.15 -2.98 7.44 31.18 0.23 -2.75 16 13 C -0.10 -1.74 3.77 -10.27 -0.04 -1.78 16 14 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 15 C 0.07 1.46 5.51 86.30 0.48 1.94 16 16 N -0.68 -21.16 6.13 -517.92 -3.17 -24.33 16 17 C 0.06 2.19 6.17 85.55 0.53 2.72 16 18 C 0.44 20.99 7.82 87.66 0.69 21.68 16 19 O -0.62 -35.11 15.78 -3.08 -0.05 -35.16 16 20 N -0.57 -29.70 5.29 -306.99 -1.62 -31.32 16 21 C -0.33 -19.21 9.68 84.04 0.81 -18.39 16 22 H 0.08 4.78 7.16 -2.92 -0.02 4.76 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 25 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 29 C -0.12 -1.47 7.39 31.12 0.23 -1.24 16 30 C 0.05 0.63 6.32 86.45 0.55 1.18 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 33 H 0.04 0.40 8.00 -2.39 -0.02 0.38 16 34 H 0.06 0.58 7.96 -2.39 -0.02 0.56 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.37 6.89 -2.39 -0.02 1.36 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.41 4.19 8.70 -92.71 -0.81 3.39 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.72 7.92 -2.38 -0.02 1.70 16 41 H 0.04 0.76 7.88 -2.39 -0.02 0.74 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.34 11.48 8.43 -89.69 -0.76 10.72 16 44 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.40 19.43 7.90 -92.70 -0.73 18.69 16 47 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 48 H 0.11 1.13 8.10 -2.39 -0.02 1.12 16 49 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.08 0.72 7.73 -2.39 -0.02 0.70 16 51 H 0.07 1.17 7.62 -2.39 -0.02 1.15 16 Total: -1.00 -75.27 413.09 -4.55 -79.82 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -1.35 Total: 43.08 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 6.68 Total: 15.54 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -11.82 Total: -131.89 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.09 Total: -51.74 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.27 -4.55 -79.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330700249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.016 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds