Wall clock time and date at job start Tue Mar 31 2020 20:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 N 1.46499 * 109.46840 * 65.00000 * 4 2 1 6 6 N 1.40124 * 126.16469 * 95.00431 * 5 4 2 7 7 H 0.97003 * 125.90381 * 0.02562 * 6 5 4 8 8 C 1.36594 * 108.18290 * 179.97438 * 6 5 4 9 9 C 1.50704 * 125.77722 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.46972 * 275.00197 * 9 8 6 11 11 O 1.21282 * 120.00423 * 359.97438 * 10 9 8 12 12 N 1.34786 * 119.99856 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99799 * 359.97438 * 12 10 9 14 14 C 1.46496 * 119.99950 * 179.97438 * 12 10 9 15 15 C 1.53006 * 109.46989 * 89.99615 * 14 12 10 16 16 H 1.09000 * 109.47230 * 65.00450 * 15 14 12 17 17 C 1.53007 * 109.46606 * 184.99733 * 15 14 12 18 18 N 1.46496 * 109.47330 * 304.99753 * 15 14 12 19 19 C 1.36939 * 120.00092 * 154.99958 * 18 15 14 20 20 H 1.08001 * 119.99914 * 0.02562 * 19 18 15 21 21 C 1.38808 * 120.00076 * 179.97438 * 19 18 15 22 22 N 1.31616 * 120.00146 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00021 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47427 * 59.99733 * 23 21 19 25 25 H 1.48493 * 109.47162 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.46866 * 300.00270 * 23 21 19 27 27 C 1.34827 * 108.45266 * 359.97438 * 8 6 5 28 28 C 1.34874 * 126.16837 * 274.69067 * 5 4 2 29 29 O 1.21776 * 126.18690 * 359.97438 * 28 5 4 30 30 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 31 31 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 33 33 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 34 34 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 36 36 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 37 37 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 38 38 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 39 39 H 1.09000 * 109.46721 * 34.99961 * 9 8 6 40 40 H 1.09000 * 109.47175 * 154.99905 * 9 8 6 41 41 H 1.08995 * 109.46945 * 90.00237 * 13 12 10 42 42 H 1.09001 * 109.46954 * 210.00451 * 13 12 10 43 43 H 1.09005 * 109.47140 * 330.00329 * 13 12 10 44 44 H 1.09000 * 109.47194 * 209.99365 * 14 12 10 45 45 H 1.08997 * 109.47052 * 330.00123 * 14 12 10 46 46 H 1.09000 * 109.46741 * 60.00417 * 17 15 14 47 47 H 1.09006 * 109.46563 * 179.97438 * 17 15 14 48 48 H 1.08994 * 109.47498 * 299.99974 * 17 15 14 49 49 H 0.96998 * 120.00230 * 334.99936 * 18 15 14 50 50 H 0.97002 * 120.00383 * 180.02562 * 22 21 19 51 51 H 1.08001 * 125.96057 * 180.02562 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 7 2.4407 -3.1875 0.7113 7 1 3.3414 -3.1102 0.3596 8 6 1.7218 -4.3432 0.8261 9 6 2.1933 -5.7175 0.4257 10 6 1.9328 -5.9297 -1.0433 11 8 1.4149 -5.0517 -1.7004 12 7 2.2745 -7.0957 -1.6267 13 6 2.8995 -8.1565 -0.8329 14 6 2.0208 -7.3022 -3.0547 15 6 3.2354 -6.8375 -3.8609 16 1 4.0912 -7.4702 -3.6257 17 6 2.9235 -6.9365 -5.3556 18 7 3.5465 -5.4477 -3.5180 19 6 4.8197 -4.9707 -3.6812 20 1 5.5944 -5.6190 -4.0632 21 6 5.1144 -3.6536 -3.3568 22 7 4.1702 -2.8633 -2.8918 23 14 6.8510 -3.0028 -3.5802 24 1 7.2425 -3.1167 -5.0081 25 1 6.9030 -1.5782 -3.1643 26 1 7.7882 -3.7964 -2.7452 27 6 0.5190 -4.0466 1.3582 28 6 0.4748 -2.6523 1.5936 29 8 -0.4581 -2.0330 2.0722 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.1263 -0.6442 1.2952 38 1 1.6053 -0.2617 2.1370 39 1 3.2618 -5.8065 0.6219 40 1 1.6541 -6.4690 1.0026 41 1 2.1264 -8.8017 -0.4159 42 1 3.5600 -8.7454 -1.4693 43 1 3.4774 -7.7115 -0.0227 44 1 1.8433 -8.3611 -3.2428 45 1 1.1443 -6.7279 -3.3548 46 1 2.0676 -6.3039 -5.5908 47 1 3.7886 -6.6051 -5.9299 48 1 2.6920 -7.9706 -5.6108 49 1 2.8507 -4.8652 -3.1752 50 1 4.3760 -1.9428 -2.6654 51 1 -0.2714 -4.7511 1.5712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331507184.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:17 Heat of formation + Delta-G solvation = 15.393738 kcal Electronic energy + Delta-G solvation = -31631.513926 eV Core-core repulsion = 27568.823420 eV Total energy + Delta-G solvation = -4062.690506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.27348 -39.50444 -36.78943 -36.14668 -35.93120 -34.46110 -32.72093 -31.97365 -29.62223 -29.42749 -28.62423 -27.05626 -26.93667 -25.94344 -24.81149 -23.63374 -21.03290 -20.61352 -20.00541 -19.88302 -18.88127 -17.59406 -17.40634 -16.61927 -15.85053 -15.71205 -15.46858 -15.34264 -14.72887 -14.51187 -14.32516 -13.84691 -13.57327 -13.44860 -13.31022 -13.09828 -12.99814 -12.79398 -12.57712 -12.34664 -12.22784 -12.14978 -12.06065 -11.91981 -11.88579 -11.75909 -11.44919 -11.26133 -11.00756 -10.89962 -10.74180 -10.70845 -10.52458 -10.42345 -10.14289 -9.65713 -9.38971 -9.33443 -8.94088 -8.79203 -8.16931 -7.44331 -6.91737 -5.73286 -3.02774 1.86668 2.12932 3.08658 3.34928 3.38022 3.41212 3.43091 3.74678 4.14615 4.54905 4.64346 4.85721 4.90052 4.95094 5.11718 5.19664 5.25516 5.40454 5.42990 5.44567 5.45907 5.52344 5.52682 5.72900 5.73616 5.78336 5.85155 5.93052 5.97983 6.02487 6.04135 6.10125 6.17472 6.22733 6.26268 6.31957 6.34166 6.53640 6.61316 6.63496 6.72182 6.75383 6.88580 7.09049 7.57684 7.66093 7.73641 7.90465 8.42245 8.66223 8.73842 9.55600 10.19269 10.59274 11.45557 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.004804 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.322829 B = 5827.556361 C = 7825.558779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C -0.141 4.141 4 C 0.142 3.858 5 N -0.409 5.409 6 N -0.470 5.470 7 H 0.446 0.554 8 C 0.222 3.778 9 C -0.086 4.086 10 C 0.523 3.477 11 O -0.501 6.501 12 N -0.608 5.608 13 C 0.081 3.919 14 C 0.111 3.889 15 C 0.154 3.846 16 H 0.043 0.957 17 C -0.164 4.164 18 N -0.721 5.721 19 C -0.233 4.233 20 H 0.063 0.937 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.896 3.104 24 H -0.288 1.288 25 H -0.293 1.293 26 H -0.290 1.290 27 C -0.355 4.355 28 C 0.535 3.465 29 O -0.567 6.567 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.035 0.965 49 H 0.399 0.601 50 H 0.249 0.751 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 -6.423 8.548 10.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C -0.199 4.199 4 C 0.021 3.979 5 N -0.231 5.231 6 N -0.190 5.190 7 H 0.293 0.707 8 C 0.101 3.899 9 C -0.127 4.127 10 C 0.309 3.691 11 O -0.374 6.374 12 N -0.342 5.342 13 C -0.063 4.063 14 C -0.012 4.012 15 C 0.043 3.957 16 H 0.061 0.939 17 C -0.225 4.225 18 N -0.367 5.367 19 C -0.365 4.365 20 H 0.081 0.919 21 C -0.209 4.209 22 N -0.568 5.568 23 Si 0.728 3.272 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.217 1.217 27 C -0.387 4.387 28 C 0.335 3.665 29 O -0.449 6.449 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.238 0.762 50 H 0.059 0.941 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.561 -5.227 8.457 10.267 hybrid contribution 1.631 0.506 -0.576 1.802 sum -0.930 -4.721 7.881 9.234 Atomic orbital electron populations 1.21804 0.94077 1.02879 1.00954 1.21615 0.97361 0.96248 0.98621 1.21751 1.00868 0.95356 1.01964 1.21761 1.00539 0.76056 0.99579 1.48425 1.13281 1.01517 1.59862 1.43996 1.14970 0.98931 1.61056 0.70736 1.20017 0.91336 0.86523 0.92030 1.20497 1.04317 0.92183 0.95744 1.19893 0.78918 0.81960 0.88339 1.90780 1.41573 1.40697 1.64312 1.47521 1.61907 1.15109 1.09708 1.21733 0.97489 0.90825 0.96221 1.21837 0.99803 1.00130 0.79453 1.20648 0.94301 0.89024 0.91757 0.93912 1.22412 1.01699 0.98791 0.99604 1.42737 1.10007 1.06614 1.77362 1.19175 0.87241 0.94494 1.35601 0.91877 1.24678 0.96862 0.96605 1.02724 1.69764 1.30745 1.05959 1.50328 0.86454 0.85111 0.77796 0.77877 1.21491 1.21913 1.21676 1.21490 0.99562 0.96614 1.21007 1.16852 0.80570 0.88835 0.80291 1.90802 1.34696 1.68654 1.50723 0.93244 0.91902 0.92738 0.89628 0.92604 0.92142 0.92730 0.89971 0.88664 0.87196 0.86129 0.93016 0.91139 0.91358 0.91042 0.90223 0.93369 0.92712 0.94572 0.76246 0.94055 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.29 37.15 0.31 -1.96 16 2 C -0.12 -1.79 3.13 -90.62 -0.28 -2.07 16 3 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 4 C 0.14 2.02 5.81 -4.04 -0.02 2.00 16 5 N -0.41 -6.86 3.52 -63.24 -0.22 -7.08 16 6 N -0.47 -7.64 7.29 33.67 0.25 -7.39 16 7 H 0.45 7.22 8.96 -182.58 -1.64 5.58 16 8 C 0.22 3.44 5.70 -81.68 -0.47 2.97 16 9 C -0.09 -1.08 4.79 -29.04 -0.14 -1.22 16 10 C 0.52 8.73 6.96 -10.98 -0.08 8.65 16 11 O -0.50 -10.89 13.35 5.56 0.07 -10.82 16 12 N -0.61 -8.77 2.77 -181.57 -0.50 -9.27 16 13 C 0.08 0.78 10.24 59.85 0.61 1.39 16 14 C 0.11 1.72 5.14 -4.04 -0.02 1.70 16 15 C 0.15 2.89 3.20 -67.93 -0.22 2.67 16 16 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 17 C -0.16 -2.88 9.49 37.16 0.35 -2.52 16 18 N -0.72 -17.33 4.52 -53.42 -0.24 -17.57 16 19 C -0.23 -6.16 9.93 -15.06 -0.15 -6.31 16 20 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.92 -25.85 13.06 55.49 0.72 -25.12 16 23 Si 0.90 21.38 29.55 -169.99 -5.02 16.35 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.36 -5.97 10.73 -39.56 -0.42 -6.40 16 28 C 0.54 10.12 6.53 -14.98 -0.10 10.02 16 29 O -0.57 -12.08 16.39 5.12 0.08 -12.00 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.21 5.76 -51.93 -0.30 0.91 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.11 1.19 7.40 -51.93 -0.38 0.80 16 40 H 0.12 1.06 8.11 -51.93 -0.42 0.64 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 43 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16 44 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 45 H 0.08 1.39 7.42 -51.93 -0.39 1.01 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.40 10.50 5.02 -40.82 -0.20 10.30 16 50 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 51 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 411.66 15.07 6.20 6.20 Total: -1.00 -34.92 411.66 -9.00 -43.93 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -9.97 Total: 15.66 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.38 Total: 7.11 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: 0.00 Total: -66.44 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.16 Total: -22.81 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.92 -9.00 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331507184.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.319 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds