Wall clock time and date at job start Tue Mar 31 2020 20:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 N 1.46499 * 109.46840 * 65.00000 * 4 2 1 6 6 N 1.40124 * 126.16469 * 95.00431 * 5 4 2 7 7 H 0.97003 * 125.90381 * 0.02562 * 6 5 4 8 8 C 1.36594 * 108.18290 * 179.97438 * 6 5 4 9 9 C 1.50704 * 125.77722 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.46972 * 275.00197 * 9 8 6 11 11 O 1.21282 * 120.00423 * 359.97438 * 10 9 8 12 12 N 1.34786 * 119.99856 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99799 * 359.97438 * 12 10 9 14 14 C 1.46496 * 119.99950 * 179.97438 * 12 10 9 15 15 C 1.53006 * 109.46989 * 89.99615 * 14 12 10 16 16 H 1.09000 * 109.47230 * 65.00450 * 15 14 12 17 17 C 1.53007 * 109.46606 * 184.99733 * 15 14 12 18 18 N 1.46496 * 109.47330 * 304.99753 * 15 14 12 19 19 C 1.36939 * 120.00092 * 154.99958 * 18 15 14 20 20 H 1.08001 * 119.99914 * 0.02562 * 19 18 15 21 21 C 1.38808 * 120.00076 * 179.97438 * 19 18 15 22 22 N 1.31616 * 120.00146 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00021 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47427 * 59.99733 * 23 21 19 25 25 H 1.48493 * 109.47162 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.46866 * 300.00270 * 23 21 19 27 27 C 1.34827 * 108.45266 * 359.97438 * 8 6 5 28 28 C 1.34874 * 126.16837 * 274.69067 * 5 4 2 29 29 O 1.21776 * 126.18690 * 359.97438 * 28 5 4 30 30 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 31 31 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 33 33 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 34 34 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 36 36 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 37 37 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 38 38 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 39 39 H 1.09000 * 109.46721 * 34.99961 * 9 8 6 40 40 H 1.09000 * 109.47175 * 154.99905 * 9 8 6 41 41 H 1.08995 * 109.46945 * 90.00237 * 13 12 10 42 42 H 1.09001 * 109.46954 * 210.00451 * 13 12 10 43 43 H 1.09005 * 109.47140 * 330.00329 * 13 12 10 44 44 H 1.09000 * 109.47194 * 209.99365 * 14 12 10 45 45 H 1.08997 * 109.47052 * 330.00123 * 14 12 10 46 46 H 1.09000 * 109.46741 * 60.00417 * 17 15 14 47 47 H 1.09006 * 109.46563 * 179.97438 * 17 15 14 48 48 H 1.08994 * 109.47498 * 299.99974 * 17 15 14 49 49 H 0.96998 * 120.00230 * 334.99936 * 18 15 14 50 50 H 0.97002 * 120.00383 * 180.02562 * 22 21 19 51 51 H 1.08001 * 125.96057 * 180.02562 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 7 2.4407 -3.1875 0.7113 7 1 3.3414 -3.1102 0.3596 8 6 1.7218 -4.3432 0.8261 9 6 2.1933 -5.7175 0.4257 10 6 1.9328 -5.9297 -1.0433 11 8 1.4149 -5.0517 -1.7004 12 7 2.2745 -7.0957 -1.6267 13 6 2.8995 -8.1565 -0.8329 14 6 2.0208 -7.3022 -3.0547 15 6 3.2354 -6.8375 -3.8609 16 1 4.0912 -7.4702 -3.6257 17 6 2.9235 -6.9365 -5.3556 18 7 3.5465 -5.4477 -3.5180 19 6 4.8197 -4.9707 -3.6812 20 1 5.5944 -5.6190 -4.0632 21 6 5.1144 -3.6536 -3.3568 22 7 4.1702 -2.8633 -2.8918 23 14 6.8510 -3.0028 -3.5802 24 1 7.2425 -3.1167 -5.0081 25 1 6.9030 -1.5782 -3.1643 26 1 7.7882 -3.7964 -2.7452 27 6 0.5190 -4.0466 1.3582 28 6 0.4748 -2.6523 1.5936 29 8 -0.4581 -2.0330 2.0722 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.1263 -0.6442 1.2952 38 1 1.6053 -0.2617 2.1370 39 1 3.2618 -5.8065 0.6219 40 1 1.6541 -6.4690 1.0026 41 1 2.1264 -8.8017 -0.4159 42 1 3.5600 -8.7454 -1.4693 43 1 3.4774 -7.7115 -0.0227 44 1 1.8433 -8.3611 -3.2428 45 1 1.1443 -6.7279 -3.3548 46 1 2.0676 -6.3039 -5.5908 47 1 3.7886 -6.6051 -5.9299 48 1 2.6920 -7.9706 -5.6108 49 1 2.8507 -4.8652 -3.1752 50 1 4.3760 -1.9428 -2.6654 51 1 -0.2714 -4.7511 1.5712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331507184.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:16 Heat of formation + Delta-G solvation = -8.301229 kcal Electronic energy + Delta-G solvation = -31632.541417 eV Core-core repulsion = 27568.823420 eV Total energy + Delta-G solvation = -4063.717997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.58413 -40.75405 -38.17337 -37.51676 -37.31294 -35.87819 -34.10518 -33.61134 -30.93768 -30.77678 -30.26451 -28.16746 -28.07326 -27.09063 -26.06434 -25.49841 -22.35098 -21.93002 -21.41045 -21.20655 -20.11753 -19.19594 -18.84047 -17.89623 -17.10761 -17.00538 -16.86162 -16.60689 -16.39309 -15.78573 -15.72759 -15.53876 -14.85510 -14.73667 -14.69359 -14.35368 -14.22213 -14.04927 -13.82991 -13.63680 -13.50084 -13.38699 -13.19144 -13.16602 -13.04473 -12.97498 -12.82555 -12.78174 -12.67683 -12.36700 -12.25050 -12.13583 -11.96117 -11.79078 -11.77185 -11.52583 -10.90306 -10.78959 -10.69246 -10.05835 -9.35289 -8.83506 -8.81150 -7.77090 -5.06153 0.57986 0.88035 1.45083 1.48721 1.52607 1.88182 2.19498 2.45454 2.60313 2.91869 3.48383 3.49790 3.71010 3.76657 3.81331 3.99877 4.08292 4.16393 4.26442 4.29133 4.35918 4.45559 4.55046 4.58365 4.59429 4.61589 4.68877 4.70737 4.75539 4.83588 4.88431 4.91077 4.97927 5.01067 5.05692 5.12179 5.12304 5.13771 5.29298 5.31334 5.32187 5.43639 5.51825 5.59607 5.82455 6.25913 6.39287 6.56566 6.65365 7.33280 7.43139 7.51901 8.32405 8.58889 9.41377 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.004804 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.322829 B = 5827.556361 C = 7825.558779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C -0.134 4.134 4 C 0.136 3.864 5 N -0.410 5.410 6 N -0.470 5.470 7 H 0.446 0.554 8 C 0.229 3.771 9 C -0.078 4.078 10 C 0.512 3.488 11 O -0.564 6.564 12 N -0.606 5.606 13 C 0.071 3.929 14 C 0.117 3.883 15 C 0.146 3.854 16 H 0.050 0.950 17 C -0.156 4.156 18 N -0.734 5.734 19 C -0.233 4.233 20 H 0.065 0.935 21 C -0.065 4.065 22 N -0.946 5.946 23 Si 0.954 3.046 24 H -0.293 1.293 25 H -0.301 1.301 26 H -0.278 1.278 27 C -0.374 4.374 28 C 0.517 3.483 29 O -0.604 6.604 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.134 0.866 40 H 0.167 0.833 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.052 0.948 46 H 0.030 0.970 47 H 0.032 0.968 48 H 0.078 0.922 49 H 0.386 0.614 50 H 0.242 0.758 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 -8.655 9.456 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 C -0.192 4.192 4 C 0.016 3.984 5 N -0.231 5.231 6 N -0.189 5.189 7 H 0.292 0.708 8 C 0.107 3.893 9 C -0.118 4.118 10 C 0.300 3.700 11 O -0.442 6.442 12 N -0.339 5.339 13 C -0.071 4.071 14 C -0.007 4.007 15 C 0.036 3.964 16 H 0.068 0.932 17 C -0.217 4.217 18 N -0.379 5.379 19 C -0.365 4.365 20 H 0.083 0.917 21 C -0.258 4.258 22 N -0.596 5.596 23 Si 0.786 3.214 24 H -0.220 1.220 25 H -0.227 1.227 26 H -0.204 1.204 27 C -0.404 4.404 28 C 0.317 3.683 29 O -0.489 6.489 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.152 0.848 40 H 0.184 0.816 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.135 0.865 45 H 0.071 0.929 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.097 0.903 49 H 0.223 0.777 50 H 0.051 0.949 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.027 -7.551 9.360 12.070 hybrid contribution 1.180 1.079 -0.957 1.864 sum 0.153 -6.473 8.402 10.607 Atomic orbital electron populations 1.21723 0.95083 1.00649 1.01560 1.21530 0.96380 0.98049 0.97362 1.21702 1.01413 0.93090 1.02995 1.21999 1.02007 0.74918 0.99515 1.48521 1.13055 1.02402 1.59077 1.44162 1.14958 0.99227 1.60549 0.70776 1.20476 0.90708 0.87498 0.90569 1.20667 1.06352 0.91295 0.93507 1.20581 0.77983 0.81758 0.89680 1.90763 1.44541 1.42906 1.65968 1.47663 1.61150 1.15552 1.09522 1.22102 0.98704 0.89989 0.96287 1.21729 0.96962 1.02047 0.79947 1.20945 0.96047 0.86512 0.92875 0.93180 1.22286 0.99964 1.01018 0.98421 1.42950 1.08849 1.08676 1.77429 1.19471 0.88297 0.94585 1.34177 0.91697 1.25295 0.99816 0.97088 1.03629 1.69933 1.32194 1.05684 1.51804 0.85518 0.81812 0.76764 0.77349 1.22011 1.22727 1.20424 1.21675 1.00681 0.96040 1.22047 1.17205 0.80717 0.89793 0.80573 1.90753 1.35899 1.69533 1.52666 0.92736 0.95486 0.91898 0.93403 0.91661 0.92130 0.90670 0.87708 0.87543 0.84839 0.81571 0.89729 0.90387 0.89804 0.86521 0.92925 0.95086 0.94856 0.90324 0.77683 0.94868 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 8.29 71.98 0.60 -3.91 16 2 C -0.11 -3.52 3.13 -10.79 -0.03 -3.56 16 3 C -0.13 -3.17 9.19 71.98 0.66 -2.51 16 4 C 0.14 3.91 5.81 86.38 0.50 4.41 16 5 N -0.41 -14.12 3.52 -472.12 -1.66 -15.78 16 6 N -0.47 -15.44 7.29 -47.38 -0.35 -15.79 16 7 H 0.45 14.62 8.96 -213.30 -1.91 12.71 16 8 C 0.23 6.98 5.70 41.04 0.23 7.22 16 9 C -0.08 -1.76 4.79 29.10 0.14 -1.62 16 10 C 0.51 16.50 6.96 87.65 0.61 17.11 16 11 O -0.56 -25.15 13.35 -3.03 -0.04 -25.19 16 12 N -0.61 -15.93 2.77 -846.75 -2.35 -18.28 16 13 C 0.07 1.05 10.24 127.77 1.31 2.36 16 14 C 0.12 3.38 5.14 86.38 0.44 3.83 16 15 C 0.15 5.27 3.20 45.00 0.14 5.41 16 16 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 17 C -0.16 -5.29 9.49 71.98 0.68 -4.61 16 18 N -0.73 -35.37 4.52 -322.93 -1.46 -36.83 16 19 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 20 H 0.07 3.32 7.83 -2.91 -0.02 3.30 16 21 C -0.07 -3.53 5.50 84.86 0.47 -3.07 16 22 N -0.95 -54.43 13.06 21.65 0.28 -54.15 16 23 Si 0.95 44.18 29.55 68.60 2.03 46.21 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 C -0.37 -12.66 10.73 22.28 0.24 -12.42 16 28 C 0.52 20.17 6.53 85.02 0.56 20.73 16 29 O -0.60 -26.76 16.39 -4.59 -0.08 -26.84 16 30 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.03 1.09 5.76 -2.39 -0.01 1.08 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.13 2.43 7.40 -2.39 -0.02 2.41 16 40 H 0.17 2.21 8.11 -2.39 -0.02 2.19 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 1.08 8.07 -2.39 -0.02 1.06 16 43 H 0.08 1.00 6.44 -2.38 -0.02 0.99 16 44 H 0.12 2.30 8.07 -2.39 -0.02 2.28 16 45 H 0.05 1.83 7.42 -2.39 -0.02 1.81 16 46 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.39 20.83 5.02 -92.71 -0.47 20.36 16 50 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 51 H 0.17 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -80.98 411.66 2.32 -78.66 By element: Atomic # 1 Polarization: 51.48 SS G_CDS: -1.45 Total: 50.03 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 7.39 Total: 17.95 kcal Atomic # 7 Polarization: -135.29 SS G_CDS: -5.53 Total: -140.83 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -0.12 Total: -52.02 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -80.98 2.32 -78.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331507184.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.361 kcal (2) G-P(sol) polarization free energy of solvation -80.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds