Wall clock time and date at job start Tue Mar 31 2020 20:59:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.47150 * 2 1
4 4 C 1.53003 * 109.47102 * 119.99933 * 2 1 3
5 5 N 1.46498 * 109.47644 * 175.00042 * 4 2 1
6 6 N 1.40123 * 126.16185 * 95.27609 * 5 4 2
7 7 H 0.96996 * 125.91480 * 0.04513 * 6 5 4
8 8 C 1.36601 * 108.17824 * 180.16934 * 6 5 4
9 9 C 1.50701 * 125.77685 * 179.84284 * 8 6 5
10 10 C 1.50699 * 109.46837 * 274.71472 * 9 8 6
11 11 O 1.21283 * 120.00005 * 359.97438 * 10 9 8
12 12 N 1.34777 * 119.99772 * 180.02562 * 10 9 8
13 13 C 1.46506 * 119.99873 * 359.97438 * 12 10 9
14 14 C 1.46498 * 119.99828 * 180.27730 * 12 10 9
15 15 C 1.52999 * 109.47070 * 269.71859 * 14 12 10
16 16 H 1.09004 * 109.47136 * 295.00487 * 15 14 12
17 17 C 1.52996 * 109.47278 * 174.99995 * 15 14 12
18 18 N 1.46502 * 109.47046 * 55.00056 * 15 14 12
19 19 C 1.36938 * 120.00200 * 205.00100 * 18 15 14
20 20 H 1.07991 * 119.99977 * 0.02562 * 19 18 15
21 21 C 1.38816 * 119.99949 * 180.02562 * 19 18 15
22 22 N 1.31624 * 119.99883 * 359.97438 * 21 19 18
23 23 Si 1.86792 * 119.99915 * 179.97438 * 21 19 18
24 24 H 1.48504 * 109.47069 * 90.00014 * 23 21 19
25 25 H 1.48501 * 109.47279 * 209.99840 * 23 21 19
26 26 H 1.48502 * 109.47213 * 329.99985 * 23 21 19
27 27 C 1.34830 * 108.44973 * 359.57789 * 8 6 5
28 28 C 1.34868 * 126.16505 * 274.98090 * 5 4 2
29 29 O 1.21780 * 126.19387 * 359.97438 * 28 5 4
30 30 H 1.08994 * 109.47561 * 299.99911 * 1 2 3
31 31 H 1.09002 * 109.46671 * 60.00534 * 1 2 3
32 32 H 1.09005 * 109.47409 * 180.02562 * 1 2 3
33 33 H 1.09003 * 109.47360 * 239.99486 * 2 1 3
34 34 H 1.09004 * 109.47180 * 179.97438 * 3 2 1
35 35 H 1.08992 * 109.47088 * 299.99246 * 3 2 1
36 36 H 1.08998 * 109.46768 * 60.00150 * 3 2 1
37 37 H 1.09004 * 109.46994 * 54.99926 * 4 2 1
38 38 H 1.09008 * 109.46813 * 295.00612 * 4 2 1
39 39 H 1.08999 * 109.47046 * 154.71004 * 9 8 6
40 40 H 1.08997 * 109.46721 * 34.71536 * 9 8 6
41 41 H 1.08999 * 109.46892 * 90.00594 * 13 12 10
42 42 H 1.09000 * 109.46803 * 209.99767 * 13 12 10
43 43 H 1.09000 * 109.47214 * 330.00561 * 13 12 10
44 44 H 1.08993 * 109.47575 * 29.72405 * 14 12 10
45 45 H 1.09001 * 109.46870 * 149.72361 * 14 12 10
46 46 H 1.09006 * 109.47114 * 60.00529 * 17 15 14
47 47 H 1.09000 * 109.47138 * 180.02562 * 17 15 14
48 48 H 1.08990 * 109.47377 * 300.00032 * 17 15 14
49 49 H 0.97003 * 119.99967 * 24.99740 * 18 15 14
50 50 H 0.96999 * 119.99671 * 179.97438 * 22 21 19
51 51 H 1.07997 * 125.95804 * 180.29053 * 27 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 7 3.5000 -0.8264 1.1907
6 7 4.4167 0.0531 1.7820
7 1 4.1948 0.8401 2.3038
8 6 5.6770 -0.3881 1.4941
9 6 6.9614 0.2666 1.9333
10 6 7.3329 1.3506 0.9545
11 8 6.6247 1.5696 -0.0054
12 7 8.4526 2.0759 1.1454
13 6 9.3084 1.8109 2.3046
14 6 8.8105 3.1338 0.1972
15 6 9.6914 2.5502 -0.9093
16 1 10.6362 2.2139 -0.4822
17 6 9.9624 3.6239 -1.9651
18 7 9.0056 1.4152 -1.5319
19 6 9.7309 0.4342 -2.1539
20 1 10.8085 0.4971 -2.1850
21 6 9.0809 -0.6409 -2.7443
22 7 7.7675 -0.7177 -2.7058
23 14 10.0703 -1.9787 -3.5932
24 1 10.4092 -3.0414 -2.6129
25 1 9.2679 -2.5622 -4.6981
26 1 11.3205 -1.3960 -4.1435
27 6 5.5775 -1.5117 0.7555
28 6 4.2040 -1.7903 0.5627
29 8 3.7410 -2.7304 -0.0576
30 1 -0.3634 0.5138 0.8899
31 1 -0.3633 0.5138 -0.8901
32 1 -0.3634 -1.0277 0.0005
33 1 1.8934 -0.5139 -0.8899
34 1 3.1300 1.4425 0.0005
35 1 1.6768 1.9563 -0.8900
36 1 1.6766 1.9563 0.8900
37 1 1.6053 -1.7198 1.2952
38 1 1.7515 -0.1583 2.1370
39 1 7.7557 -0.4790 1.9686
40 1 6.8273 0.7016 2.9237
41 1 10.0564 1.0633 2.0407
42 1 9.8064 2.7323 2.6067
43 1 8.6991 1.4401 3.1288
44 1 7.9040 3.5503 -0.2417
45 1 9.3560 3.9201 0.7190
46 1 10.4728 4.4683 -1.5018
47 1 10.5896 3.2080 -2.7536
48 1 9.0177 3.9601 -2.3922
49 1 8.0376 1.3586 -1.5036
50 1 7.3134 -1.4688 -3.1187
51 1 6.4025 -2.0972 0.3774
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001331507185.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:59:22
Heat of formation + Delta-G solvation = 20.393171 kcal
Electronic energy + Delta-G solvation = -31401.413562 eV
Core-core repulsion = 27338.939847 eV
Total energy + Delta-G solvation = -4062.473715 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.27825 -39.47471 -36.71018 -36.44106 -35.87561 -34.38254 -32.72746 -31.83546
-29.70904 -29.50863 -28.48911 -27.22528 -27.02320 -25.97459 -24.78661 -23.45505
-21.05557 -20.92879 -19.91360 -19.85648 -18.87516 -17.79406 -17.27289 -16.57635
-15.83207 -15.66652 -15.48792 -15.17142 -14.97446 -14.53199 -14.25041 -13.80920
-13.70107 -13.41162 -13.28361 -13.09619 -12.96399 -12.87060 -12.56426 -12.39812
-12.38308 -12.16651 -12.10130 -11.90972 -11.82983 -11.76029 -11.38566 -11.34060
-11.15531 -11.03760 -10.80809 -10.72636 -10.56886 -10.33556 -9.94018 -9.50320
-9.35664 -9.31375 -8.81820 -8.73774 -8.13371 -7.44149 -6.72890 -5.50774
-2.82215 1.82959 2.04102 3.09240 3.41086 3.54516 3.59058 3.63252
3.80869 4.04292 4.63362 4.66521 4.73952 4.74607 4.82660 4.98756
5.06866 5.14158 5.22170 5.36916 5.47074 5.49323 5.50616 5.54421
5.55197 5.72374 5.74037 5.74882 5.81336 5.87471 5.89643 6.01580
6.03541 6.09490 6.22200 6.23681 6.29625 6.30189 6.39553 6.40243
6.69884 6.83213 6.89713 6.95471 7.16467 7.50552 7.74491 7.82745
7.86713 8.61615 8.70754 8.74130 9.76901 10.38280 10.76653 11.67981
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.010050 B = 0.004079 C = 0.003464
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2785.292797 B = 6862.753022 C = 8081.717431
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.120 4.120
3 C -0.148 4.148
4 C 0.143 3.857
5 N -0.415 5.415
6 N -0.497 5.497
7 H 0.432 0.568
8 C 0.202 3.798
9 C -0.081 4.081
10 C 0.522 3.478
11 O -0.501 6.501
12 N -0.608 5.608
13 C 0.080 3.920
14 C 0.112 3.888
15 C 0.155 3.845
16 H 0.042 0.958
17 C -0.164 4.164
18 N -0.720 5.720
19 C -0.248 4.248
20 H 0.062 0.938
21 C -0.006 4.006
22 N -0.910 5.910
23 Si 0.895 3.105
24 H -0.291 1.291
25 H -0.293 1.293
26 H -0.286 1.286
27 C -0.303 4.303
28 C 0.538 3.462
29 O -0.558 6.558
30 H 0.054 0.946
31 H 0.060 0.940
32 H 0.057 0.943
33 H 0.083 0.917
34 H 0.064 0.936
35 H 0.057 0.943
36 H 0.048 0.952
37 H 0.096 0.904
38 H 0.079 0.921
39 H 0.126 0.874
40 H 0.101 0.899
41 H 0.058 0.942
42 H 0.067 0.933
43 H 0.065 0.935
44 H 0.077 0.923
45 H 0.070 0.930
46 H 0.033 0.967
47 H 0.054 0.946
48 H 0.046 0.954
49 H 0.398 0.602
50 H 0.254 0.746
51 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.956 8.292 17.641 20.697
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.139 4.139
3 C -0.206 4.206
4 C 0.022 3.978
5 N -0.239 5.239
6 N -0.219 5.219
7 H 0.276 0.724
8 C 0.086 3.914
9 C -0.122 4.122
10 C 0.308 3.692
11 O -0.374 6.374
12 N -0.342 5.342
13 C -0.064 4.064
14 C -0.011 4.011
15 C 0.043 3.957
16 H 0.060 0.940
17 C -0.225 4.225
18 N -0.367 5.367
19 C -0.379 4.379
20 H 0.080 0.920
21 C -0.204 4.204
22 N -0.556 5.556
23 Si 0.726 3.274
24 H -0.219 1.219
25 H -0.219 1.219
26 H -0.212 1.212
27 C -0.334 4.334
28 C 0.336 3.664
29 O -0.437 6.437
30 H 0.073 0.927
31 H 0.079 0.921
32 H 0.076 0.924
33 H 0.102 0.898
34 H 0.084 0.916
35 H 0.076 0.924
36 H 0.067 0.933
37 H 0.114 0.886
38 H 0.098 0.902
39 H 0.144 0.856
40 H 0.119 0.881
41 H 0.077 0.923
42 H 0.085 0.915
43 H 0.083 0.917
44 H 0.096 0.904
45 H 0.088 0.912
46 H 0.052 0.948
47 H 0.073 0.927
48 H 0.065 0.935
49 H 0.237 0.763
50 H 0.064 0.936
51 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -7.815 7.778 16.724 20.032
hybrid contribution 0.428 -0.265 -0.402 0.644
sum -7.386 7.514 16.322 19.427
Atomic orbital electron populations
1.21754 0.94272 1.02000 1.01977 1.21613 0.95927 0.97206 0.99203
1.21848 1.02319 0.95054 1.01348 1.21707 0.75337 1.02433 0.98359
1.48408 1.01932 1.22046 1.51483 1.43621 0.99668 1.25459 1.53168
0.72395 1.19931 0.83882 0.92948 0.94593 1.20462 0.93956 0.98726
0.99097 1.19912 0.81130 0.81962 0.86206 1.90773 1.51176 1.66397
1.29050 1.47523 1.23972 1.36618 1.26133 1.21758 0.95120 1.01844
0.87662 1.21851 1.00239 0.88383 0.90664 1.20612 0.94709 0.89245
0.91113 0.93976 1.22431 1.00883 0.98387 1.00837 1.42690 1.07305
1.21310 1.65354 1.19109 0.90441 0.99826 1.28560 0.91960 1.24722
0.95414 0.98646 1.01573 1.69710 1.05806 1.31503 1.48610 0.86400
0.78892 0.82763 0.79321 1.21900 1.21927 1.21157 1.21744 0.97299
1.03060 1.11263 1.17012 0.87840 0.81635 0.79905 1.90822 1.77023
1.31388 1.44485 0.92736 0.92115 0.92358 0.89839 0.91645 0.92420
0.93319 0.88584 0.90217 0.85580 0.88080 0.92312 0.91459 0.91653
0.90428 0.91210 0.94765 0.92662 0.93493 0.76309 0.93573 0.82170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.31 9.19 37.16 0.34 -0.97 16
2 C -0.12 -1.46 3.13 -90.62 -0.28 -1.74 16
3 C -0.15 -1.80 9.08 37.16 0.34 -1.46 16
4 C 0.14 1.67 5.75 -4.04 -0.02 1.65 16
5 N -0.42 -6.31 3.14 -63.24 -0.20 -6.51 16
6 N -0.50 -6.39 6.74 33.67 0.23 -6.16 16
7 H 0.43 3.96 8.96 -182.58 -1.64 2.32 16
8 C 0.20 3.09 5.70 -81.68 -0.47 2.63 16
9 C -0.08 -1.01 4.79 -29.03 -0.14 -1.15 16
10 C 0.52 8.72 6.97 -10.99 -0.08 8.65 16
11 O -0.50 -10.87 13.36 5.55 0.07 -10.80 16
12 N -0.61 -8.85 2.77 -181.57 -0.50 -9.35 16
13 C 0.08 0.78 10.29 59.85 0.62 1.40 16
14 C 0.11 1.76 5.18 -4.04 -0.02 1.74 16
15 C 0.15 3.04 3.20 -67.93 -0.22 2.82 16
16 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16
17 C -0.16 -2.99 9.49 37.16 0.35 -2.64 16
18 N -0.72 -18.40 4.53 -53.43 -0.24 -18.64 16
19 C -0.25 -7.02 9.93 -15.06 -0.15 -7.17 16
20 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16
21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16
22 N -0.91 -28.77 13.06 55.49 0.72 -28.04 16
23 Si 0.89 23.28 29.55 -169.99 -5.02 18.26 16
24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16
25 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16
26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
27 C -0.30 -5.92 10.73 -39.56 -0.42 -6.35 16
28 C 0.54 10.89 7.95 -14.99 -0.12 10.77 16
29 O -0.56 -13.30 17.92 5.12 0.09 -13.21 16
30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16
34 H 0.06 0.99 7.23 -51.93 -0.38 0.61 16
35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16
37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16
38 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16
39 H 0.13 1.52 8.11 -51.93 -0.42 1.10 16
40 H 0.10 0.77 7.40 -51.93 -0.38 0.39 16
41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
42 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16
43 H 0.06 0.45 6.44 -51.93 -0.33 0.11 16
44 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16
45 H 0.07 0.83 7.89 -51.93 -0.41 0.42 16
46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
47 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16
48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
49 H 0.40 11.11 5.03 -40.82 -0.21 10.91 16
50 H 0.25 8.02 8.31 -40.82 -0.34 7.68 16
51 H 0.16 3.41 8.06 -52.49 -0.42 2.99 16
LS Contribution 415.61 15.07 6.26 6.26
Total: -1.00 -39.53 415.61 -8.98 -48.51
By element:
Atomic # 1 Polarization: 21.81 SS G_CDS: -10.02 Total: 11.79 kcal
Atomic # 6 Polarization: 8.26 SS G_CDS: -0.37 Total: 7.89 kcal
Atomic # 7 Polarization: -68.71 SS G_CDS: 0.01 Total: -68.70 kcal
Atomic # 8 Polarization: -24.17 SS G_CDS: 0.17 Total: -24.01 kcal
Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.26 kcal
Total LS contribution 6.26 Total: 6.26 kcal
Total: -39.53 -8.98 -48.51 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001331507185.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.902 kcal
(2) G-P(sol) polarization free energy of solvation -39.532 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.371 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.509 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.393 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds