Wall clock time and date at job start Tue Mar 31 2020 21:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47225 * 2 1 4 4 C 1.36738 * 127.13328 * 85.58634 * 3 2 1 5 5 C 1.50704 * 126.35232 * 359.76732 * 4 3 2 6 6 C 1.52996 * 109.46670 * 90.00490 * 5 4 3 7 7 C 1.52999 * 109.47020 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47555 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99840 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00586 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99419 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00319 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46992 * 90.00003 * 12 10 8 14 14 H 1.48499 * 109.47032 * 210.00002 * 12 10 8 15 15 H 1.48500 * 109.47296 * 329.99969 * 12 10 8 16 16 N 1.30295 * 107.30313 * 179.73810 * 4 3 2 17 17 N 1.28527 * 110.05199 * 0.02562 * 16 4 3 18 18 C 1.31206 * 109.86257 * 359.97438 * 17 16 4 19 19 N 1.38578 * 126.47567 * 179.97438 * 18 17 16 20 20 C 1.46900 * 111.00217 * 304.64924 * 19 18 17 21 21 C 1.46908 * 110.99946 * 68.59878 * 19 18 17 22 22 C 1.53006 * 109.47064 * 170.00024 * 21 19 18 23 23 H 1.09002 * 109.52017 * 59.99893 * 22 21 19 24 24 C 1.53142 * 109.52190 * 180.12964 * 22 21 19 25 25 O 1.43077 * 109.15018 * 175.21551 * 24 22 21 26 26 C 1.43075 * 113.59144 * 302.04918 * 25 24 22 27 27 C 1.53142 * 109.15340 * 57.95260 * 26 25 24 28 28 O 1.43075 * 109.52509 * 299.87296 * 22 21 19 29 29 H 1.09003 * 109.46977 * 55.02380 * 1 2 3 30 30 H 1.09000 * 109.47198 * 175.01717 * 1 2 3 31 31 H 1.08997 * 109.47311 * 295.02173 * 1 2 3 32 32 H 1.08994 * 109.47447 * 239.99845 * 2 1 3 33 33 H 1.09001 * 109.47264 * 119.99862 * 2 1 3 34 34 H 1.08993 * 109.47215 * 210.00596 * 5 4 3 35 35 H 1.09003 * 109.46748 * 330.00744 * 5 4 3 36 36 H 1.09001 * 109.47130 * 300.00043 * 6 5 4 37 37 H 1.08998 * 109.47315 * 60.00113 * 6 5 4 38 38 H 1.09001 * 109.46832 * 299.99769 * 7 6 5 39 39 H 1.08998 * 109.47357 * 59.99683 * 7 6 5 40 40 H 0.97005 * 119.99989 * 179.97438 * 11 10 8 41 41 H 1.08996 * 109.47432 * 66.19121 * 20 19 18 42 42 H 1.08998 * 109.47188 * 186.19423 * 20 19 18 43 43 H 1.08998 * 109.46512 * 306.19126 * 20 19 18 44 44 H 1.08996 * 109.47331 * 290.00064 * 21 19 18 45 45 H 1.09003 * 109.46661 * 50.00267 * 21 19 18 46 46 H 1.08994 * 109.52566 * 295.11651 * 24 22 21 47 47 H 1.09001 * 109.52033 * 55.24943 * 24 22 21 48 48 H 1.09004 * 109.52718 * 177.84970 * 26 25 24 49 49 H 1.08997 * 109.52459 * 297.98659 * 26 25 24 50 50 H 1.09006 * 109.52663 * 64.58606 * 27 26 25 51 51 H 1.08997 * 109.53144 * 184.72003 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2144 2.1874 1.0869 5 6 1.9621 1.8223 2.5271 6 6 3.2309 1.2151 3.1289 7 6 2.9747 0.8437 4.5909 8 6 4.2246 0.2462 5.1840 9 1 5.1129 0.1414 4.5786 10 6 4.2341 -0.1676 6.4991 11 7 3.1523 -0.0404 7.2362 12 14 5.7832 -0.9089 7.2340 13 1 6.6147 0.1693 7.8268 14 1 5.4121 -1.8850 8.2898 15 1 6.5542 -1.6002 6.1697 16 7 2.6604 3.3298 0.6466 17 7 2.7581 3.3005 -0.6346 18 6 2.3772 2.1282 -1.0841 19 7 2.3445 1.7249 -2.4095 20 6 1.5409 2.6487 -3.2212 21 6 3.7029 1.5920 -2.9529 22 6 3.6400 0.9128 -4.3225 23 1 3.0352 1.5152 -5.0004 24 6 5.0558 0.7707 -4.8888 25 8 4.9992 0.0363 -6.1154 26 6 4.4157 -1.2629 -5.9785 27 6 3.0000 -1.1208 -5.4123 28 8 3.0551 -0.3858 -4.1859 29 1 -0.3633 0.5891 -0.8421 30 1 -0.3633 -1.0238 -0.0893 31 1 -0.3634 0.4346 0.9312 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6870 2.7167 3.0859 35 1 1.1509 1.0962 2.5810 36 1 3.5061 0.3206 2.5701 37 1 4.0421 1.9411 3.0749 38 1 2.6994 1.7380 5.1500 39 1 2.1636 0.1176 4.6446 40 1 3.1588 -0.3319 8.1614 41 1 2.0331 3.6204 -3.2602 42 1 1.4404 2.2515 -4.2312 43 1 0.5529 2.7595 -2.7743 44 1 4.1506 2.5802 -3.0577 45 1 4.3077 0.9889 -2.2757 46 1 5.4745 1.7595 -5.0753 47 1 5.6826 0.2387 -4.1731 48 1 4.3709 -1.7468 -6.9542 49 1 5.0214 -1.8647 -5.3009 50 1 2.3733 -0.5878 -6.1274 51 1 2.5807 -2.1097 -5.2268 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339441627.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:16 Heat of formation + Delta-G solvation = -13.735627 kcal Electronic energy + Delta-G solvation = -30190.781111 eV Core-core repulsion = 26126.827460 eV Total energy + Delta-G solvation = -4063.953651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.85307 -40.40417 -37.83302 -36.24500 -35.75157 -34.65490 -32.72699 -32.26198 -30.52731 -29.80098 -29.01361 -27.30997 -26.92410 -25.39896 -24.21022 -23.55377 -23.26137 -21.43841 -20.75997 -20.49323 -20.05834 -17.58147 -17.18140 -16.97491 -16.60592 -16.28491 -16.27193 -16.01276 -15.51522 -15.39561 -14.73781 -14.54090 -14.41224 -14.06166 -14.02119 -13.82101 -13.60393 -13.13885 -12.93421 -12.59876 -12.47381 -12.31073 -12.25165 -12.09947 -12.00259 -11.71661 -11.52627 -11.44788 -11.28383 -11.06116 -10.88017 -10.81168 -10.73048 -10.56804 -10.44496 -10.00888 -9.76602 -9.57440 -9.50023 -9.17672 -8.99166 -8.64229 -8.36528 -6.01796 -4.03970 1.83594 2.28536 2.98988 3.19668 3.24803 3.31567 3.37815 3.40996 3.52705 4.17520 4.39010 4.44430 4.48607 4.57459 4.61471 4.64755 4.67325 4.78369 4.88634 4.91259 4.96084 5.05533 5.11049 5.16168 5.18537 5.24253 5.28364 5.34431 5.36462 5.40368 5.50379 5.56049 5.59321 5.65508 5.84813 5.90562 5.95706 6.08530 6.22372 6.35161 6.50533 6.61648 6.65735 6.69706 6.75600 7.02992 7.26018 7.63846 7.76952 7.97478 8.39972 8.90783 9.02504 9.60226 11.09485 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.002412 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.400330 B =11605.855607 C =12540.539211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.459 5.459 4 C 0.208 3.792 5 C -0.037 4.037 6 C -0.102 4.102 7 C 0.023 3.977 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.057 3.943 11 N -0.895 5.895 12 Si 0.891 3.109 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 N -0.293 5.293 17 N -0.313 5.313 18 C 0.325 3.675 19 N -0.453 5.453 20 C 0.036 3.964 21 C 0.074 3.926 22 C 0.061 3.939 23 H 0.073 0.927 24 C 0.030 3.970 25 O -0.378 6.378 26 C 0.021 3.979 27 C 0.024 3.976 28 O -0.357 6.357 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.261 0.739 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.104 0.896 49 H 0.062 0.938 50 H 0.059 0.941 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 -2.020 -28.224 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.152 5.152 4 C -0.059 4.059 5 C -0.077 4.077 6 C -0.141 4.141 7 C -0.014 4.014 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.199 1.199 16 N -0.133 5.133 17 N -0.158 5.158 18 C -0.032 4.032 19 N -0.177 5.177 20 C -0.112 4.112 21 C -0.054 4.054 22 C 0.003 3.997 23 H 0.091 0.909 24 C -0.048 4.048 25 O -0.296 6.296 26 C -0.056 4.056 27 C -0.053 4.053 28 O -0.276 6.276 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.125 0.875 47 H 0.083 0.917 48 H 0.122 0.878 49 H 0.080 0.920 50 H 0.077 0.923 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.084 -1.122 -28.080 28.397 hybrid contribution 0.654 -1.175 0.410 1.406 sum -3.430 -2.297 -27.669 27.976 Atomic orbital electron populations 1.22090 0.93907 1.03243 1.02903 1.21897 0.95779 0.78745 1.05353 1.46427 1.48684 1.13923 1.06144 1.25340 1.00625 0.87692 0.92256 1.20381 1.01013 1.02659 0.83615 1.21649 0.94176 0.98853 0.99413 1.19098 0.97123 0.96779 0.88415 1.21215 0.97983 1.40431 0.96232 0.92756 1.25006 0.96148 0.95983 0.97243 1.69957 1.27621 1.47780 1.08072 0.86606 0.83491 0.79069 0.78918 1.20608 1.21225 1.19927 1.74055 1.18288 1.18680 1.02320 1.74511 1.19966 1.16917 1.04394 1.22138 1.04135 0.88855 0.88038 1.58463 1.14224 1.48964 0.96098 1.22426 0.97528 0.94036 0.97163 1.22144 0.88444 1.00268 0.94508 1.22781 0.94356 0.85741 0.96865 0.90933 1.23217 0.96105 0.98176 0.87263 1.88106 1.81944 1.28530 1.31047 1.23296 0.94198 0.85331 1.02764 1.23236 0.96508 0.97984 0.87584 1.88233 1.81615 1.27463 1.30310 0.92065 0.90331 0.91775 0.87953 0.88364 0.88464 0.90324 0.93614 0.92454 0.96154 0.96473 0.92979 0.93439 0.90343 0.91100 0.91046 0.89580 0.87481 0.91694 0.87806 0.91966 0.92300 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.24 37.16 0.38 -1.20 16 2 C 0.10 1.20 6.58 -4.04 -0.03 1.17 16 3 N -0.46 -6.69 2.81 -114.09 -0.32 -7.01 16 4 C 0.21 3.53 7.32 -154.01 -1.13 2.41 16 5 C -0.04 -0.62 5.51 -27.88 -0.15 -0.78 16 6 C -0.10 -2.07 5.13 -26.73 -0.14 -2.21 16 7 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 8 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 9 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 12 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 N -0.29 -5.58 12.18 32.99 0.40 -5.18 16 17 N -0.31 -5.47 12.11 30.31 0.37 -5.11 16 18 C 0.32 4.76 6.43 -318.90 -2.05 2.70 16 19 N -0.45 -5.15 4.63 -182.38 -0.84 -5.99 16 20 C 0.04 0.34 9.14 60.06 0.55 0.89 16 21 C 0.07 0.73 4.59 -3.82 -0.02 0.72 16 22 C 0.06 0.50 2.71 -26.65 -0.07 0.43 16 23 H 0.07 0.55 6.60 -51.93 -0.34 0.21 16 24 C 0.03 0.23 6.34 37.23 0.24 0.46 16 25 O -0.38 -3.28 10.85 -48.75 -0.53 -3.81 16 26 C 0.02 0.14 7.05 37.23 0.26 0.40 16 27 C 0.02 0.16 7.05 37.23 0.26 0.42 16 28 O -0.36 -3.33 10.36 -48.75 -0.51 -3.83 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 32 H 0.10 1.09 8.12 -51.93 -0.42 0.67 16 33 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 34 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.08 1.18 7.73 -51.93 -0.40 0.78 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.05 0.47 8.12 -51.93 -0.42 0.04 16 42 H 0.08 0.58 6.58 -51.93 -0.34 0.24 16 43 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 45 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 46 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 413.97 15.07 6.24 6.24 Total: -1.00 -33.94 413.97 -10.98 -44.92 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -9.05 Total: -3.47 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -2.45 Total: -7.51 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.34 Total: -49.09 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -1.03 Total: -7.65 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.94 -10.98 -44.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339441627.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.184 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds