Wall clock time and date at job start Tue Mar 31 2020 21:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46835 * 2 1 4 4 C 1.36740 * 127.14202 * 90.02321 * 3 2 1 5 5 C 1.50699 * 126.34507 * 359.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 269.71650 * 5 4 3 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99963 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00302 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99832 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47310 * 89.99428 * 11 9 7 13 13 H 1.48491 * 109.47296 * 209.99911 * 11 9 7 14 14 H 1.48502 * 109.46905 * 329.99956 * 11 9 7 15 15 N 1.30289 * 107.30599 * 179.73440 * 4 3 2 16 16 N 1.28533 * 110.05617 * 0.25589 * 15 4 3 17 17 C 1.31220 * 109.85808 * 0.02562 * 16 15 4 18 18 N 1.38577 * 126.47042 * 180.02562 * 17 16 15 19 19 C 1.47850 * 111.00334 * 120.81383 * 18 17 16 20 20 C 1.54899 * 104.79563 * 213.63662 * 19 18 17 21 21 C 1.55132 * 101.65794 * 37.06824 * 20 19 18 22 22 H 1.09000 * 110.71038 * 82.73024 * 21 20 19 23 23 O 1.42904 * 110.85687 * 205.89480 * 21 20 19 24 24 C 1.42901 * 114.00076 * 263.68273 * 23 21 20 25 25 C 1.53002 * 109.47284 * 179.97438 * 24 23 21 26 26 O 1.42903 * 109.46584 * 64.99997 * 25 24 23 27 27 C 1.42907 * 113.99489 * 179.97438 * 26 25 24 28 28 C 1.47442 * 111.00187 * 359.97091 * 18 17 16 29 29 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47651 * 300.00481 * 1 2 3 31 31 H 1.09004 * 109.46655 * 60.00487 * 1 2 3 32 32 H 1.08993 * 109.47651 * 239.99519 * 2 1 3 33 33 H 1.09003 * 109.46849 * 119.98998 * 2 1 3 34 34 H 1.08993 * 109.47512 * 149.71772 * 5 4 3 35 35 H 1.09000 * 109.47247 * 29.71481 * 5 4 3 36 36 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 37 37 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 38 38 H 0.97002 * 119.99998 * 179.97438 * 10 9 7 39 39 H 1.09004 * 110.36547 * 332.46570 * 19 18 17 40 40 H 1.08998 * 110.37246 * 94.79827 * 19 18 17 41 41 H 1.09002 * 110.99186 * 278.97071 * 20 19 18 42 42 H 1.09005 * 111.02485 * 155.17505 * 20 19 18 43 43 H 1.08999 * 109.46964 * 300.00317 * 24 23 21 44 44 H 1.09003 * 109.46887 * 60.00020 * 24 23 21 45 45 H 1.08997 * 109.46832 * 185.00219 * 25 24 23 46 46 H 1.08997 * 109.47142 * 305.00375 * 25 24 23 47 47 H 1.09004 * 109.46907 * 179.97438 * 27 26 25 48 48 H 1.08998 * 109.47176 * 300.00390 * 27 26 25 49 49 H 1.08997 * 109.46732 * 60.00466 * 27 26 25 50 50 H 1.09003 * 109.88961 * 242.66453 * 28 18 17 51 51 H 1.08998 * 109.88958 * 3.68488 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2939 2.1595 1.0900 5 6 2.1512 1.7557 2.5348 6 6 0.7452 2.1067 3.0260 7 6 0.6023 1.7023 4.4706 8 1 1.4312 1.2406 4.9867 9 6 -0.5865 1.9216 5.1336 10 7 -0.7114 1.5682 6.3942 11 14 -2.0204 2.7194 4.2408 12 1 -2.8552 1.6680 3.6061 13 1 -2.8428 3.4860 5.2109 14 1 -1.5029 3.6386 3.1955 15 7 2.7076 3.3132 0.6479 16 7 2.7071 3.3186 -0.6374 17 6 2.2890 2.1592 -1.0879 18 7 2.1548 1.7919 -2.4173 19 6 2.9893 0.6116 -2.7278 20 6 3.4441 0.8231 -4.1934 21 6 3.6650 2.3581 -4.2345 22 1 4.6480 2.6167 -3.8409 23 8 3.5071 2.8594 -5.5634 24 6 4.7354 3.0083 -6.2783 25 6 4.4472 3.5478 -7.6807 26 8 3.9053 4.8664 -7.5816 27 6 3.5995 5.4654 -8.8425 28 6 2.5498 2.8947 -3.3127 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.8891 2.2874 3.1354 35 1 2.3114 0.6817 2.6295 36 1 0.5849 3.1807 2.9314 37 1 0.0073 1.5749 2.4254 38 1 -1.5477 1.7228 6.8607 39 1 3.8531 0.5726 -2.0642 40 1 2.4014 -0.3022 -2.6410 41 1 2.6633 0.5222 -4.8919 42 1 4.3728 0.2894 -4.3956 43 1 5.3832 3.7051 -5.7465 44 1 5.2299 2.0400 -6.3565 45 1 5.3726 3.5775 -8.2558 46 1 3.7297 2.8968 -8.1801 47 1 3.1927 6.4637 -8.6814 48 1 4.5076 5.5349 -9.4414 49 1 2.8647 4.8542 -9.3664 50 1 1.6950 3.2113 -3.9105 51 1 2.9224 3.7339 -2.7254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341054891.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:47 Heat of formation + Delta-G solvation = -0.487317 kcal Electronic energy + Delta-G solvation = -29825.846875 eV Core-core repulsion = 25762.467714 eV Total energy + Delta-G solvation = -4063.379161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.75394 -39.76618 -38.41671 -37.05655 -35.65000 -34.09485 -32.35661 -31.46605 -30.59107 -30.34240 -28.69523 -28.23563 -26.62535 -25.51830 -24.08823 -23.03643 -22.65064 -21.89317 -21.32279 -20.42395 -19.71814 -17.75485 -17.52706 -17.05078 -16.85657 -16.17055 -16.10734 -15.93640 -15.61692 -15.07896 -14.80516 -14.58038 -14.30867 -14.16392 -13.52991 -13.45384 -13.30088 -13.10085 -12.99466 -12.91506 -12.80685 -12.59357 -12.27669 -12.16949 -11.94729 -11.82660 -11.55731 -11.48059 -11.28979 -11.11234 -11.06423 -10.97718 -10.55355 -10.17039 -10.10787 -10.06784 -9.91637 -9.86825 -9.77206 -9.47705 -9.27808 -8.57953 -8.00635 -6.09245 -4.08450 2.03044 2.38789 3.14043 3.19058 3.28299 3.35014 3.37805 3.44659 3.64922 4.18163 4.18911 4.42372 4.51057 4.56660 4.66960 4.70281 4.80213 4.85443 4.87649 4.90411 4.96059 5.00172 5.01393 5.08482 5.16566 5.19746 5.24615 5.25344 5.30917 5.32555 5.37611 5.48900 5.59175 5.64981 5.67527 5.74498 5.86759 6.15414 6.20533 6.24298 6.33653 6.48335 6.53015 6.70086 6.80650 6.87090 7.17482 7.29397 7.35826 7.70467 8.44916 8.93824 9.12008 9.52732 11.03556 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021693 B = 0.002146 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.443707 B =13044.657163 C =13428.323277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 N -0.477 5.477 4 C 0.207 3.793 5 C -0.021 4.021 6 C -0.005 4.005 7 C -0.522 4.522 8 H 0.075 0.925 9 C 0.072 3.928 10 N -0.899 5.899 11 Si 0.874 3.126 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.264 1.264 15 N -0.292 5.292 16 N -0.325 5.325 17 C 0.333 3.667 18 N -0.436 5.436 19 C 0.041 3.959 20 C -0.148 4.148 21 C 0.072 3.928 22 H 0.074 0.926 23 O -0.362 6.362 24 C 0.062 3.938 25 C 0.063 3.937 26 O -0.382 6.382 27 C 0.031 3.969 28 C 0.051 3.949 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.012 0.988 38 H 0.264 0.736 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.039 0.961 49 H 0.041 0.959 50 H 0.100 0.900 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.756 -4.036 -30.229 32.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 N -0.172 5.172 4 C -0.061 4.061 5 C -0.061 4.061 6 C -0.043 4.043 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.130 4.130 10 N -0.538 5.538 11 Si 0.701 3.299 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.188 1.188 15 N -0.130 5.130 16 N -0.169 5.169 17 C -0.024 4.024 18 N -0.160 5.160 19 C -0.086 4.086 20 C -0.186 4.186 21 C 0.013 3.987 22 H 0.092 0.908 23 O -0.280 6.280 24 C -0.015 4.015 25 C -0.014 4.014 26 O -0.301 6.301 27 C -0.066 4.066 28 C -0.076 4.076 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.118 0.882 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.419 -2.606 -30.077 31.937 hybrid contribution -0.457 -1.045 -0.506 1.248 sum 9.962 -3.651 -30.583 32.371 Atomic orbital electron populations 1.22217 0.93513 1.03313 1.04106 1.21922 0.96548 0.78899 1.04315 1.46293 1.51383 1.13912 1.05644 1.25557 1.00128 0.87955 0.92429 1.20214 1.02238 1.01092 0.82546 1.19597 0.90208 0.97417 0.97106 1.21004 1.00227 1.40811 0.93942 0.90649 1.24952 0.98494 0.94900 0.94672 1.69897 1.26435 1.47660 1.09784 0.86862 0.82711 0.80243 0.80085 1.20303 1.21167 1.18846 1.73999 1.19614 1.17509 1.01915 1.74381 1.21171 1.17240 1.04146 1.22551 1.02546 0.90075 0.87256 1.60315 1.51483 1.06948 0.97275 1.23165 0.95581 0.93461 0.96351 1.23206 1.02616 0.96560 0.96215 1.23283 0.99089 0.92682 0.83634 0.90765 1.87989 1.29389 1.85560 1.25072 1.22591 0.87333 0.99403 0.92144 1.22554 0.98181 0.84706 0.95931 1.87993 1.83787 1.29289 1.29019 1.22757 0.99234 0.98738 0.85837 1.22873 0.98604 0.92827 0.93329 0.90502 0.90546 0.91761 0.89297 0.88320 0.88762 0.90747 0.95662 0.97017 0.92615 0.92418 0.88891 0.89006 0.90094 0.92134 0.91755 0.91833 0.92350 0.89455 0.94216 0.94008 0.88214 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.29 6.62 -4.04 -0.03 1.26 16 3 N -0.48 -7.66 2.81 -114.08 -0.32 -7.98 16 4 C 0.21 3.96 7.32 -154.02 -1.13 2.83 16 5 C -0.02 -0.41 5.53 -27.88 -0.15 -0.57 16 6 C 0.00 -0.11 4.02 -27.88 -0.11 -0.23 16 7 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 8 H 0.08 2.19 7.99 -52.48 -0.42 1.77 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 11 Si 0.87 21.80 27.47 -169.99 -4.67 17.13 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 15 N -0.29 -6.18 12.18 32.99 0.40 -5.78 16 16 N -0.33 -6.31 10.47 30.32 0.32 -5.99 16 17 C 0.33 5.44 6.98 -318.87 -2.23 3.21 16 18 N -0.44 -5.63 5.22 -171.30 -0.89 -6.52 16 19 C 0.04 0.39 5.49 -2.30 -0.01 0.38 16 20 C -0.15 -1.13 6.81 -24.60 -0.17 -1.30 16 21 C 0.07 0.69 3.43 -24.91 -0.09 0.61 16 22 H 0.07 0.68 7.82 -51.93 -0.41 0.28 16 23 O -0.36 -3.67 10.04 -40.09 -0.40 -4.07 16 24 C 0.06 0.46 6.16 37.16 0.23 0.69 16 25 C 0.06 0.43 6.32 37.16 0.23 0.67 16 26 O -0.38 -3.67 10.67 -40.09 -0.43 -4.09 16 27 C 0.03 0.19 11.01 101.05 1.11 1.30 16 28 C 0.05 0.63 6.60 -2.84 -0.02 0.61 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.21 6.27 -51.93 -0.33 0.88 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.83 5.42 -51.93 -0.28 0.55 16 33 H 0.10 1.12 7.25 -51.93 -0.38 0.74 16 34 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 35 H 0.07 1.30 7.26 -51.93 -0.38 0.93 16 36 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 37 H 0.01 0.27 5.70 -51.93 -0.30 -0.03 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 40 H 0.09 0.73 6.68 -51.93 -0.35 0.38 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 49 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.10 1.26 8.06 -51.93 -0.42 0.84 16 51 H 0.10 1.47 6.32 -51.93 -0.33 1.14 16 LS Contribution 404.96 15.07 6.10 6.10 Total: -1.00 -34.85 404.96 -10.12 -44.97 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -8.59 Total: -2.20 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.41 Total: -5.12 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.28 Total: -52.72 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.83 Total: -8.17 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.85 -10.12 -44.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341054891.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.479 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds