Wall clock time and date at job start Tue Mar 31 2020 21:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46835 * 2 1 4 4 C 1.36740 * 127.14202 * 90.02321 * 3 2 1 5 5 C 1.50699 * 126.34507 * 359.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 269.71650 * 5 4 3 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99963 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00302 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99832 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47310 * 89.99428 * 11 9 7 13 13 H 1.48491 * 109.47296 * 209.99911 * 11 9 7 14 14 H 1.48502 * 109.46905 * 329.99956 * 11 9 7 15 15 N 1.30289 * 107.30599 * 179.73440 * 4 3 2 16 16 N 1.28533 * 110.05617 * 0.25589 * 15 4 3 17 17 C 1.31220 * 109.85808 * 0.02562 * 16 15 4 18 18 N 1.38577 * 126.47042 * 180.02562 * 17 16 15 19 19 C 1.47850 * 111.00334 * 120.81383 * 18 17 16 20 20 C 1.54899 * 104.79563 * 213.63662 * 19 18 17 21 21 C 1.55132 * 101.65794 * 37.06824 * 20 19 18 22 22 H 1.09000 * 110.71038 * 82.73024 * 21 20 19 23 23 O 1.42904 * 110.85687 * 205.89480 * 21 20 19 24 24 C 1.42901 * 114.00076 * 263.68273 * 23 21 20 25 25 C 1.53002 * 109.47284 * 179.97438 * 24 23 21 26 26 O 1.42903 * 109.46584 * 64.99997 * 25 24 23 27 27 C 1.42907 * 113.99489 * 179.97438 * 26 25 24 28 28 C 1.47442 * 111.00187 * 359.97091 * 18 17 16 29 29 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47651 * 300.00481 * 1 2 3 31 31 H 1.09004 * 109.46655 * 60.00487 * 1 2 3 32 32 H 1.08993 * 109.47651 * 239.99519 * 2 1 3 33 33 H 1.09003 * 109.46849 * 119.98998 * 2 1 3 34 34 H 1.08993 * 109.47512 * 149.71772 * 5 4 3 35 35 H 1.09000 * 109.47247 * 29.71481 * 5 4 3 36 36 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 37 37 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 38 38 H 0.97002 * 119.99998 * 179.97438 * 10 9 7 39 39 H 1.09004 * 110.36547 * 332.46570 * 19 18 17 40 40 H 1.08998 * 110.37246 * 94.79827 * 19 18 17 41 41 H 1.09002 * 110.99186 * 278.97071 * 20 19 18 42 42 H 1.09005 * 111.02485 * 155.17505 * 20 19 18 43 43 H 1.08999 * 109.46964 * 300.00317 * 24 23 21 44 44 H 1.09003 * 109.46887 * 60.00020 * 24 23 21 45 45 H 1.08997 * 109.46832 * 185.00219 * 25 24 23 46 46 H 1.08997 * 109.47142 * 305.00375 * 25 24 23 47 47 H 1.09004 * 109.46907 * 179.97438 * 27 26 25 48 48 H 1.08998 * 109.47176 * 300.00390 * 27 26 25 49 49 H 1.08997 * 109.46732 * 60.00466 * 27 26 25 50 50 H 1.09003 * 109.88961 * 242.66453 * 28 18 17 51 51 H 1.08998 * 109.88958 * 3.68488 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2939 2.1595 1.0900 5 6 2.1512 1.7557 2.5348 6 6 0.7452 2.1067 3.0260 7 6 0.6023 1.7023 4.4706 8 1 1.4312 1.2406 4.9867 9 6 -0.5865 1.9216 5.1336 10 7 -0.7114 1.5682 6.3942 11 14 -2.0204 2.7194 4.2408 12 1 -2.8552 1.6680 3.6061 13 1 -2.8428 3.4860 5.2109 14 1 -1.5029 3.6386 3.1955 15 7 2.7076 3.3132 0.6479 16 7 2.7071 3.3186 -0.6374 17 6 2.2890 2.1592 -1.0879 18 7 2.1548 1.7919 -2.4173 19 6 2.9893 0.6116 -2.7278 20 6 3.4441 0.8231 -4.1934 21 6 3.6650 2.3581 -4.2345 22 1 4.6480 2.6167 -3.8409 23 8 3.5071 2.8594 -5.5634 24 6 4.7354 3.0083 -6.2783 25 6 4.4472 3.5478 -7.6807 26 8 3.9053 4.8664 -7.5816 27 6 3.5995 5.4654 -8.8425 28 6 2.5498 2.8947 -3.3127 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.8891 2.2874 3.1354 35 1 2.3114 0.6817 2.6295 36 1 0.5849 3.1807 2.9314 37 1 0.0073 1.5749 2.4254 38 1 -1.5477 1.7228 6.8607 39 1 3.8531 0.5726 -2.0642 40 1 2.4014 -0.3022 -2.6410 41 1 2.6633 0.5222 -4.8919 42 1 4.3728 0.2894 -4.3956 43 1 5.3832 3.7051 -5.7465 44 1 5.2299 2.0400 -6.3565 45 1 5.3726 3.5775 -8.2558 46 1 3.7297 2.8968 -8.1801 47 1 3.1927 6.4637 -8.6814 48 1 4.5076 5.5349 -9.4414 49 1 2.8647 4.8542 -9.3664 50 1 1.6950 3.2113 -3.9105 51 1 2.9224 3.7339 -2.7254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341054891.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:46 Heat of formation + Delta-G solvation = -22.428865 kcal Electronic energy + Delta-G solvation = -29826.798332 eV Core-core repulsion = 25762.467714 eV Total energy + Delta-G solvation = -4064.330618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.08927 -40.59805 -39.05388 -37.80222 -36.92335 -35.85815 -34.02242 -32.69587 -31.52417 -31.26118 -29.87910 -29.32435 -27.27466 -27.12095 -25.18748 -23.71376 -23.59175 -23.30923 -22.43689 -21.55400 -21.14562 -19.09324 -18.55615 -18.30682 -17.62050 -17.37520 -17.17085 -16.55814 -16.49331 -16.29562 -15.83857 -15.67927 -15.44960 -15.14221 -15.01293 -14.82937 -14.59699 -14.31377 -14.09991 -13.93459 -13.67336 -13.45865 -13.31210 -13.21598 -13.05588 -12.92130 -12.70410 -12.47899 -12.40920 -12.29416 -12.14194 -11.95840 -11.92531 -11.78974 -11.71141 -11.50143 -11.41193 -11.14615 -10.77529 -10.75477 -10.63716 -10.53138 -9.29551 -8.31068 -6.34009 0.73571 1.19251 1.29477 1.35014 1.45678 1.76076 2.32548 2.43536 2.66462 2.88075 3.04239 3.35997 3.42332 3.49824 3.62338 3.90166 3.93568 4.01550 4.07233 4.12089 4.13734 4.19736 4.25489 4.32737 4.41321 4.44815 4.51317 4.51844 4.57494 4.60824 4.63356 4.66702 4.69621 4.75572 4.79463 4.81242 4.84572 4.87236 4.97162 5.05334 5.08174 5.13902 5.34316 5.41657 5.47188 5.51341 5.61836 6.12170 6.16614 6.23935 6.29334 6.72630 7.30349 7.72773 8.84753 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021693 B = 0.002146 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.443707 B =13044.657163 C =13428.323277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 N -0.472 5.472 4 C 0.196 3.804 5 C -0.009 4.009 6 C 0.004 3.996 7 C -0.523 4.523 8 H 0.050 0.950 9 C 0.018 3.982 10 N -0.941 5.941 11 Si 0.934 3.066 12 H -0.260 1.260 13 H -0.282 1.282 14 H -0.266 1.266 15 N -0.329 5.329 16 N -0.362 5.362 17 C 0.351 3.649 18 N -0.435 5.435 19 C 0.037 3.963 20 C -0.132 4.132 21 C 0.078 3.922 22 H 0.077 0.923 23 O -0.382 6.382 24 C 0.056 3.944 25 C 0.059 3.941 26 O -0.419 6.419 27 C 0.026 3.974 28 C 0.048 3.952 29 H 0.107 0.893 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.004 0.996 37 H 0.022 0.978 38 H 0.267 0.733 39 H 0.056 0.944 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.053 0.947 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.087 0.913 48 H 0.056 0.944 49 H 0.048 0.952 50 H 0.092 0.908 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.995 -6.202 -33.334 35.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.167 5.167 4 C -0.074 4.074 5 C -0.049 4.049 6 C -0.035 4.035 7 C -0.561 4.561 8 H 0.068 0.932 9 C -0.180 4.180 10 N -0.582 5.582 11 Si 0.759 3.241 12 H -0.185 1.185 13 H -0.208 1.208 14 H -0.191 1.191 15 N -0.167 5.167 16 N -0.206 5.206 17 C -0.007 4.007 18 N -0.161 5.161 19 C -0.089 4.089 20 C -0.170 4.170 21 C 0.019 3.981 22 H 0.095 0.905 23 O -0.301 6.301 24 C -0.020 4.020 25 C -0.018 4.018 26 O -0.339 6.339 27 C -0.070 4.070 28 C -0.079 4.079 29 H 0.126 0.874 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.022 0.978 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.129 0.871 43 H 0.072 0.928 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.080 0.920 47 H 0.106 0.894 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.110 0.890 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.665 -4.798 -33.212 35.211 hybrid contribution -0.488 -0.392 0.361 0.723 sum 10.177 -5.190 -32.851 34.781 Atomic orbital electron populations 1.22187 0.93796 1.04703 1.02026 1.22337 0.96260 0.77060 1.06724 1.46427 1.50797 1.14963 1.04495 1.25213 1.01187 0.88274 0.92693 1.19946 0.99462 1.02395 0.83073 1.19427 0.93121 0.95979 0.94957 1.21281 0.99290 1.39784 0.95759 0.93214 1.25742 1.01310 0.95643 0.95337 1.70017 1.27417 1.49387 1.11350 0.85900 0.79721 0.79632 0.78868 1.18457 1.20796 1.19105 1.73897 1.20792 1.18923 1.03101 1.74322 1.23463 1.19288 1.03532 1.22882 1.00099 0.89174 0.88547 1.60458 1.52191 1.08126 0.95284 1.23387 0.95456 0.92531 0.97476 1.23174 1.04169 0.94815 0.94867 1.23174 0.97772 0.94022 0.83174 0.90546 1.87960 1.31116 1.85874 1.25107 1.22830 0.86392 1.00831 0.91978 1.22741 0.99348 0.83687 0.95982 1.87941 1.84293 1.30671 1.30952 1.22889 1.00276 0.98745 0.85073 1.22816 0.99418 0.92295 0.93403 0.87400 0.93993 0.92279 0.85709 0.87167 0.89523 0.88443 0.97753 0.95978 0.92383 0.92567 0.86445 0.88461 0.87143 0.92845 0.88843 0.89352 0.91957 0.89443 0.92558 0.93338 0.88963 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 10.24 71.98 0.74 -3.13 16 2 C 0.10 2.06 6.62 86.38 0.57 2.63 16 3 N -0.47 -14.49 2.81 -514.85 -1.45 -15.93 16 4 C 0.20 7.46 7.32 137.64 1.01 8.47 16 5 C -0.01 -0.36 5.53 29.85 0.17 -0.19 16 6 C 0.00 0.18 4.02 29.85 0.12 0.30 16 7 C -0.52 -29.27 9.66 25.60 0.25 -29.03 16 8 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 9 C 0.02 1.02 5.47 84.65 0.46 1.49 16 10 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 11 Si 0.93 45.17 27.47 68.60 1.88 47.05 16 12 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 14 H -0.27 -12.90 6.54 99.48 0.65 -12.24 16 15 N -0.33 -14.19 12.18 -49.54 -0.60 -14.80 16 16 N -0.36 -14.28 10.47 -58.00 -0.61 -14.89 16 17 C 0.35 11.17 6.98 260.11 1.82 12.99 16 18 N -0.44 -10.49 5.22 -695.89 -3.63 -14.13 16 19 C 0.04 0.57 5.49 86.77 0.48 1.04 16 20 C -0.13 -1.53 6.81 31.97 0.22 -1.31 16 21 C 0.08 1.35 3.43 31.77 0.11 1.46 16 22 H 0.08 1.29 7.82 -2.39 -0.02 1.27 16 23 O -0.38 -7.16 10.04 -144.34 -1.45 -8.60 16 24 C 0.06 0.71 6.16 71.98 0.44 1.15 16 25 C 0.06 0.70 6.32 71.98 0.45 1.15 16 26 O -0.42 -7.73 10.67 -144.34 -1.54 -9.27 16 27 C 0.03 0.30 11.01 113.37 1.25 1.55 16 28 C 0.05 1.17 6.60 86.65 0.57 1.74 16 29 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.26 6.27 -2.39 -0.01 1.24 16 31 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.13 1.76 5.42 -2.39 -0.01 1.74 16 33 H 0.11 2.14 7.25 -2.39 -0.02 2.12 16 34 H 0.09 3.49 8.14 -2.39 -0.02 3.48 16 35 H 0.10 3.31 7.26 -2.39 -0.02 3.29 16 36 H 0.00 0.21 7.20 -2.39 -0.02 0.19 16 37 H 0.02 1.01 5.70 -2.39 -0.01 0.99 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.06 0.93 7.79 -2.38 -0.02 0.91 16 40 H 0.12 1.25 6.68 -2.39 -0.02 1.23 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.05 0.74 8.11 -2.39 -0.02 0.72 16 44 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.09 2.34 8.06 -2.39 -0.02 2.32 16 51 H 0.07 2.25 6.32 -2.39 -0.02 2.23 16 Total: -1.00 -78.46 404.96 2.41 -76.05 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.86 Total: 11.77 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 8.65 Total: 0.31 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -5.99 Total: -117.30 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -2.99 Total: -17.87 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.05 kcal Total: -78.46 2.41 -76.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341054891.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.620 kcal (2) G-P(sol) polarization free energy of solvation -78.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds