Wall clock time and date at job start Tue Mar 31 2020 21:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47169 * 2 1 4 4 C 1.36739 * 127.13504 * 95.26386 * 3 2 1 5 5 C 1.50694 * 126.35090 * 359.97438 * 4 3 2 6 6 C 1.52998 * 109.46955 * 89.99910 * 5 4 3 7 7 H 1.08998 * 109.47175 * 55.00817 * 6 5 4 8 8 O 1.42895 * 109.47542 * 295.00133 * 6 5 4 9 9 C 1.50708 * 109.47205 * 175.00086 * 6 5 4 10 10 H 1.08000 * 119.99498 * 0.02562 * 9 6 5 11 11 C 1.37873 * 119.99957 * 180.02562 * 9 6 5 12 12 N 1.31518 * 119.99741 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 120.00300 * 359.97438 * 11 9 6 14 14 H 1.48498 * 109.47184 * 90.00056 * 13 11 9 15 15 H 1.48502 * 109.47227 * 210.00414 * 13 11 9 16 16 H 1.48500 * 109.47051 * 330.00281 * 13 11 9 17 17 N 1.30296 * 107.30380 * 180.26651 * 4 3 2 18 18 N 1.28533 * 110.05127 * 359.55434 * 17 4 3 19 19 C 1.31214 * 109.85896 * 0.45392 * 18 17 4 20 20 N 1.38588 * 126.47075 * 179.72463 * 19 18 17 21 21 C 1.46898 * 110.99744 * 65.14186 * 20 19 18 22 22 C 1.46898 * 110.99883 * 301.19151 * 20 19 18 23 23 C 1.52999 * 109.46576 * 189.99737 * 22 20 19 24 24 O 1.42898 * 109.47481 * 65.00337 * 23 22 20 25 25 C 1.42896 * 114.00604 * 179.97438 * 24 23 22 26 26 C 1.52995 * 109.47474 * 179.97438 * 25 24 23 27 27 C 1.53001 * 117.49865 * 243.62467 * 26 25 24 28 28 C 1.52994 * 59.99961 * 252.50749 * 27 26 25 29 29 H 1.08994 * 109.47333 * 300.00029 * 1 2 3 30 30 H 1.09005 * 109.47052 * 60.00217 * 1 2 3 31 31 H 1.09004 * 109.47374 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47265 * 240.00304 * 2 1 3 33 33 H 1.08997 * 109.47283 * 119.99997 * 2 1 3 34 34 H 1.08996 * 109.47745 * 210.00471 * 5 4 3 35 35 H 1.09008 * 109.46938 * 330.00693 * 5 4 3 36 36 H 0.96699 * 114.00482 * 300.00121 * 8 6 5 37 37 H 0.96998 * 120.00091 * 179.97438 * 12 11 9 38 38 H 1.09008 * 109.46897 * 54.16139 * 21 20 19 39 39 H 1.08996 * 109.47012 * 174.15423 * 21 20 19 40 40 H 1.09003 * 109.47409 * 294.16629 * 21 20 19 41 41 H 1.09000 * 109.47192 * 309.99580 * 22 20 19 42 42 H 1.08999 * 109.47055 * 70.00187 * 22 20 19 43 43 H 1.09003 * 109.47117 * 184.99841 * 23 22 20 44 44 H 1.08998 * 109.47787 * 304.99884 * 23 22 20 45 45 H 1.09000 * 109.47184 * 300.00567 * 25 24 23 46 46 H 1.09002 * 109.46604 * 59.99656 * 25 24 23 47 47 H 1.08999 * 115.54803 * 29.32954 * 26 25 24 48 48 H 1.08991 * 117.50115 * 0.02562 * 27 26 25 49 49 H 1.09004 * 117.49623 * 145.02432 * 27 26 25 50 50 H 1.08998 * 117.50290 * 252.50742 * 28 27 26 51 51 H 1.09001 * 117.49574 * 107.48894 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3878 2.1262 1.0855 5 6 2.3694 1.6783 2.5242 6 6 3.7174 1.0474 2.8792 7 1 4.5186 1.7511 2.6533 8 8 3.9012 -0.1455 2.1142 9 6 3.7435 0.7113 4.3480 10 1 2.8844 0.9258 4.9664 11 6 4.8641 0.1299 4.9023 12 7 4.8866 -0.1639 6.1841 13 14 6.3497 -0.2417 3.8326 14 1 7.2630 0.9292 3.8299 15 1 7.0646 -1.4260 4.3726 16 1 5.9023 -0.5238 2.4450 17 7 2.7527 3.2972 0.6459 18 7 2.6486 3.3393 -0.6345 19 6 2.1989 2.1911 -1.0832 20 7 1.9535 1.8631 -2.4071 21 6 3.1988 1.8520 -3.1862 22 6 0.9686 2.7764 -3.0019 23 6 0.5379 2.2416 -4.3692 24 8 -0.1508 1.0011 -4.2001 25 6 -0.5988 0.4134 -5.4232 26 6 -1.3178 -0.9033 -5.1232 27 6 -0.6961 -2.1888 -5.6725 28 6 -1.9771 -1.6314 -6.2961 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1891 2.5376 3.1701 35 1 1.5762 0.9443 2.6662 36 1 3.2229 -0.8180 2.2651 37 1 5.6748 -0.5732 6.5740 38 1 3.9223 1.1935 -2.7053 39 1 2.9936 1.4917 -4.1942 40 1 3.6048 2.8624 -3.2369 41 1 0.0986 2.8477 -2.3491 42 1 1.4147 3.7637 -3.1220 43 1 -0.1243 2.9623 -4.8490 44 1 1.4185 2.0863 -4.9925 45 1 -1.2846 1.0964 -5.9246 46 1 0.2581 0.2203 -6.0686 47 1 -1.8137 -0.9579 -4.1540 48 1 0.2254 -2.0965 -6.2473 49 1 -0.7829 -3.0895 -5.0647 50 1 -2.9067 -2.1653 -6.0987 51 1 -1.8987 -1.1723 -7.2816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341199382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:20 Heat of formation + Delta-G solvation = 19.399695 kcal Electronic energy + Delta-G solvation = -30508.104749 eV Core-core repulsion = 26445.587954 eV Total energy + Delta-G solvation = -4062.516795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.62356 -38.98396 -37.77101 -36.68325 -36.32768 -35.23293 -32.31894 -31.70615 -30.55706 -29.91657 -28.38338 -27.13070 -26.26470 -25.33984 -23.81388 -22.78784 -22.54438 -21.49400 -20.98768 -20.24047 -19.93335 -17.64004 -17.30466 -17.08680 -16.56634 -16.14797 -15.69840 -15.53173 -15.01089 -14.84280 -14.67787 -14.52568 -14.22543 -13.97661 -13.93361 -13.53963 -13.18525 -12.96675 -12.94333 -12.76632 -12.36915 -12.24537 -11.95476 -11.89856 -11.77591 -11.64685 -11.45440 -11.27643 -11.16883 -11.06101 -10.98049 -10.81349 -10.57221 -10.40827 -10.27180 -10.20687 -9.78484 -9.75470 -9.14521 -8.84905 -8.76766 -8.62287 -8.22168 -6.17615 -4.30020 2.07909 2.51965 3.13922 3.21326 3.38163 3.47296 3.51784 3.71651 3.73604 4.38841 4.49571 4.49938 4.58207 4.74212 4.80790 4.81898 4.89037 4.92256 5.01968 5.04388 5.09553 5.14805 5.17874 5.22828 5.24043 5.28154 5.30853 5.34959 5.44902 5.50339 5.52164 5.65734 5.69677 5.70592 5.73047 5.79850 5.82601 5.89432 6.07011 6.10722 6.22777 6.38352 6.56227 6.56402 6.87340 6.96535 7.24423 7.44544 7.52242 8.20415 8.72961 8.89641 9.12197 9.46139 10.92473 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.002686 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.801529 B =10423.822362 C =11109.972906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 N -0.452 5.452 4 C 0.217 3.783 5 C -0.053 4.053 6 C 0.201 3.799 7 H 0.063 0.937 8 O -0.579 6.579 9 C -0.564 4.564 10 H 0.076 0.924 11 C 0.087 3.913 12 N -0.889 5.889 13 Si 0.870 3.130 14 H -0.286 1.286 15 H -0.295 1.295 16 H -0.219 1.219 17 N -0.301 5.301 18 N -0.317 5.317 19 C 0.323 3.677 20 N -0.453 5.453 21 C 0.033 3.967 22 C 0.071 3.929 23 C 0.068 3.932 24 O -0.368 6.368 25 C 0.093 3.907 26 C -0.150 4.150 27 C -0.176 4.176 28 C -0.177 4.177 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.351 0.649 37 H 0.266 0.734 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.047 0.953 47 H 0.114 0.886 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.097 0.903 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.269 -1.984 -25.792 29.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.144 5.144 4 C -0.051 4.051 5 C -0.093 4.093 6 C 0.143 3.857 7 H 0.081 0.919 8 O -0.385 6.385 9 C -0.601 4.601 10 H 0.094 0.906 11 C -0.118 4.118 12 N -0.526 5.526 13 Si 0.697 3.303 14 H -0.213 1.213 15 H -0.222 1.222 16 H -0.142 1.142 17 N -0.141 5.141 18 N -0.162 5.162 19 C -0.033 4.033 20 N -0.178 5.178 21 C -0.114 4.114 22 C -0.057 4.057 23 C -0.010 4.010 24 O -0.287 6.287 25 C 0.016 3.984 26 C -0.168 4.168 27 C -0.213 4.213 28 C -0.214 4.214 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.197 0.803 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.132 0.868 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.116 0.884 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.401 -0.883 -25.719 28.567 hybrid contribution 0.246 -0.982 -0.361 1.075 sum -12.155 -1.865 -26.080 28.834 Atomic orbital electron populations 1.22103 0.94222 1.03006 1.02884 1.21822 0.95185 0.78995 1.05108 1.46294 1.48383 1.13593 1.06114 1.25284 0.99012 0.88363 0.92397 1.20955 1.02160 1.02289 0.83945 1.19806 0.90885 0.83732 0.91299 0.91943 1.86778 1.53607 1.28562 1.69597 1.21411 1.03193 1.43438 0.92091 0.90566 1.24962 0.98758 0.93432 0.94690 1.69944 1.29868 1.41002 1.11738 0.87032 0.81455 0.77534 0.84323 1.21272 1.22224 1.14182 1.74022 1.20282 1.17362 1.02417 1.74463 1.18556 1.18673 1.04497 1.22107 1.04654 0.88449 0.88134 1.58509 1.11883 1.51315 0.96109 1.22456 0.89568 1.01666 0.97740 1.22165 0.95147 0.93476 0.94906 1.22563 0.95720 0.86135 0.96546 1.87998 1.75072 1.36489 1.29177 1.21962 0.96692 0.92861 0.86886 1.22110 1.03450 0.92011 0.99272 1.23055 0.96944 0.97540 1.03726 1.22973 0.97329 1.03871 0.97218 0.92311 0.91506 0.90649 0.88779 0.88187 0.87991 0.90426 0.80252 0.92467 0.91070 0.90376 0.93790 0.89819 0.91354 0.92512 0.92834 0.93272 0.93432 0.86826 0.88736 0.88553 0.88445 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.11 1.45 6.68 -4.04 -0.03 1.43 16 3 N -0.45 -7.43 2.81 -114.09 -0.32 -7.75 16 4 C 0.22 4.14 7.09 -154.02 -1.09 3.05 16 5 C -0.05 -1.02 5.00 -27.89 -0.14 -1.16 16 6 C 0.20 4.55 2.30 -27.88 -0.06 4.49 16 7 H 0.06 1.56 7.57 -51.93 -0.39 1.17 16 8 O -0.58 -12.28 9.16 -35.23 -0.32 -12.60 16 9 C -0.56 -15.00 9.34 -34.44 -0.32 -15.32 16 10 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 11 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 12 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 13 Si 0.87 21.70 26.99 -169.99 -4.59 17.11 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.22 -5.34 5.31 56.52 0.30 -5.04 16 17 N -0.30 -6.33 12.18 32.99 0.40 -5.93 16 18 N -0.32 -6.14 12.17 30.31 0.37 -5.77 16 19 C 0.32 5.33 6.40 -318.87 -2.04 3.28 16 20 N -0.45 -5.84 4.73 -182.38 -0.86 -6.70 16 21 C 0.03 0.38 9.23 60.06 0.55 0.93 16 22 C 0.07 0.76 5.24 -3.83 -0.02 0.74 16 23 C 0.07 0.56 5.99 37.16 0.22 0.78 16 24 O -0.37 -3.63 10.29 -35.23 -0.36 -3.99 16 25 C 0.09 0.70 6.22 37.16 0.23 0.93 16 26 C -0.15 -1.11 6.06 -90.62 -0.55 -1.66 16 27 C -0.18 -1.16 10.18 -26.73 -0.27 -1.43 16 28 C -0.18 -1.03 10.25 -26.74 -0.27 -1.30 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.10 1.29 5.36 -51.93 -0.28 1.01 16 34 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 35 H 0.08 1.31 7.78 -51.92 -0.40 0.91 16 36 H 0.35 6.31 7.68 45.56 0.35 6.66 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 38 H 0.07 0.89 8.10 -51.92 -0.42 0.47 16 39 H 0.08 0.68 6.46 -51.93 -0.34 0.34 16 40 H 0.04 0.51 8.13 -51.93 -0.42 0.09 16 41 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 42 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.39 6.37 -51.93 -0.33 0.06 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.05 0.32 7.87 -51.93 -0.41 -0.08 16 47 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 412.84 15.07 6.22 6.22 Total: -1.00 -33.60 412.84 -10.40 -44.00 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.21 Total: 5.50 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -3.51 Total: -4.34 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.36 Total: -51.90 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.69 Total: -16.59 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.59 Total: 17.11 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.60 -10.40 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341199382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.405 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds