Wall clock time and date at job start Tue Mar 31 2020 21:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47169 * 2 1 4 4 C 1.36739 * 127.13504 * 95.26386 * 3 2 1 5 5 C 1.50694 * 126.35090 * 359.97438 * 4 3 2 6 6 C 1.52998 * 109.46955 * 89.99910 * 5 4 3 7 7 H 1.08998 * 109.47175 * 55.00817 * 6 5 4 8 8 O 1.42895 * 109.47542 * 295.00133 * 6 5 4 9 9 C 1.50708 * 109.47205 * 175.00086 * 6 5 4 10 10 H 1.08000 * 119.99498 * 0.02562 * 9 6 5 11 11 C 1.37873 * 119.99957 * 180.02562 * 9 6 5 12 12 N 1.31518 * 119.99741 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 120.00300 * 359.97438 * 11 9 6 14 14 H 1.48498 * 109.47184 * 90.00056 * 13 11 9 15 15 H 1.48502 * 109.47227 * 210.00414 * 13 11 9 16 16 H 1.48500 * 109.47051 * 330.00281 * 13 11 9 17 17 N 1.30296 * 107.30380 * 180.26651 * 4 3 2 18 18 N 1.28533 * 110.05127 * 359.55434 * 17 4 3 19 19 C 1.31214 * 109.85896 * 0.45392 * 18 17 4 20 20 N 1.38588 * 126.47075 * 179.72463 * 19 18 17 21 21 C 1.46898 * 110.99744 * 65.14186 * 20 19 18 22 22 C 1.46898 * 110.99883 * 301.19151 * 20 19 18 23 23 C 1.52999 * 109.46576 * 189.99737 * 22 20 19 24 24 O 1.42898 * 109.47481 * 65.00337 * 23 22 20 25 25 C 1.42896 * 114.00604 * 179.97438 * 24 23 22 26 26 C 1.52995 * 109.47474 * 179.97438 * 25 24 23 27 27 C 1.53001 * 117.49865 * 243.62467 * 26 25 24 28 28 C 1.52994 * 59.99961 * 252.50749 * 27 26 25 29 29 H 1.08994 * 109.47333 * 300.00029 * 1 2 3 30 30 H 1.09005 * 109.47052 * 60.00217 * 1 2 3 31 31 H 1.09004 * 109.47374 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47265 * 240.00304 * 2 1 3 33 33 H 1.08997 * 109.47283 * 119.99997 * 2 1 3 34 34 H 1.08996 * 109.47745 * 210.00471 * 5 4 3 35 35 H 1.09008 * 109.46938 * 330.00693 * 5 4 3 36 36 H 0.96699 * 114.00482 * 300.00121 * 8 6 5 37 37 H 0.96998 * 120.00091 * 179.97438 * 12 11 9 38 38 H 1.09008 * 109.46897 * 54.16139 * 21 20 19 39 39 H 1.08996 * 109.47012 * 174.15423 * 21 20 19 40 40 H 1.09003 * 109.47409 * 294.16629 * 21 20 19 41 41 H 1.09000 * 109.47192 * 309.99580 * 22 20 19 42 42 H 1.08999 * 109.47055 * 70.00187 * 22 20 19 43 43 H 1.09003 * 109.47117 * 184.99841 * 23 22 20 44 44 H 1.08998 * 109.47787 * 304.99884 * 23 22 20 45 45 H 1.09000 * 109.47184 * 300.00567 * 25 24 23 46 46 H 1.09002 * 109.46604 * 59.99656 * 25 24 23 47 47 H 1.08999 * 115.54803 * 29.32954 * 26 25 24 48 48 H 1.08991 * 117.50115 * 0.02562 * 27 26 25 49 49 H 1.09004 * 117.49623 * 145.02432 * 27 26 25 50 50 H 1.08998 * 117.50290 * 252.50742 * 28 27 26 51 51 H 1.09001 * 117.49574 * 107.48894 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3878 2.1262 1.0855 5 6 2.3694 1.6783 2.5242 6 6 3.7174 1.0474 2.8792 7 1 4.5186 1.7511 2.6533 8 8 3.9012 -0.1455 2.1142 9 6 3.7435 0.7113 4.3480 10 1 2.8844 0.9258 4.9664 11 6 4.8641 0.1299 4.9023 12 7 4.8866 -0.1639 6.1841 13 14 6.3497 -0.2417 3.8326 14 1 7.2630 0.9292 3.8299 15 1 7.0646 -1.4260 4.3726 16 1 5.9023 -0.5238 2.4450 17 7 2.7527 3.2972 0.6459 18 7 2.6486 3.3393 -0.6345 19 6 2.1989 2.1911 -1.0832 20 7 1.9535 1.8631 -2.4071 21 6 3.1988 1.8520 -3.1862 22 6 0.9686 2.7764 -3.0019 23 6 0.5379 2.2416 -4.3692 24 8 -0.1508 1.0011 -4.2001 25 6 -0.5988 0.4134 -5.4232 26 6 -1.3178 -0.9033 -5.1232 27 6 -0.6961 -2.1888 -5.6725 28 6 -1.9771 -1.6314 -6.2961 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1891 2.5376 3.1701 35 1 1.5762 0.9443 2.6662 36 1 3.2229 -0.8180 2.2651 37 1 5.6748 -0.5732 6.5740 38 1 3.9223 1.1935 -2.7053 39 1 2.9936 1.4917 -4.1942 40 1 3.6048 2.8624 -3.2369 41 1 0.0986 2.8477 -2.3491 42 1 1.4147 3.7637 -3.1220 43 1 -0.1243 2.9623 -4.8490 44 1 1.4185 2.0863 -4.9925 45 1 -1.2846 1.0964 -5.9246 46 1 0.2581 0.2203 -6.0686 47 1 -1.8137 -0.9579 -4.1540 48 1 0.2254 -2.0965 -6.2473 49 1 -0.7829 -3.0895 -5.0647 50 1 -2.9067 -2.1653 -6.0987 51 1 -1.8987 -1.1723 -7.2816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341199382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:19 Heat of formation + Delta-G solvation = -1.772671 kcal Electronic energy + Delta-G solvation = -30509.022852 eV Core-core repulsion = 26445.587954 eV Total energy + Delta-G solvation = -4063.434898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.99164 -39.69150 -38.64822 -38.26186 -37.08104 -36.48308 -34.43619 -33.20659 -31.57991 -30.94318 -29.86639 -27.91185 -27.54879 -26.70573 -24.89970 -23.62012 -23.22491 -23.10533 -21.63787 -21.40098 -21.28629 -19.48204 -18.32528 -17.89773 -17.71780 -17.14371 -16.90266 -16.60740 -16.53328 -16.14892 -15.90604 -15.60377 -15.29429 -15.22237 -14.92384 -14.88594 -14.57752 -14.05788 -14.02071 -13.71100 -13.65956 -13.34026 -13.14770 -13.03118 -12.88055 -12.77359 -12.56306 -12.39417 -12.36829 -12.27220 -12.19818 -12.02703 -11.87895 -11.59259 -11.29186 -11.17492 -11.10144 -11.02169 -10.84429 -10.47699 -10.34078 -9.86345 -9.81763 -8.35439 -6.49491 0.75274 1.30570 1.38523 1.44196 1.71738 1.76717 2.41939 2.56695 2.68917 3.01038 3.01727 3.38512 3.70509 3.79208 3.94412 3.99612 4.00566 4.02491 4.07517 4.12555 4.14325 4.26594 4.32433 4.38426 4.39091 4.41694 4.44297 4.52462 4.61435 4.62810 4.65632 4.72223 4.75633 4.81089 4.83669 4.87334 4.90531 4.95171 5.05471 5.19676 5.23870 5.27087 5.29552 5.40518 5.44405 5.61976 5.63864 6.07871 6.25759 6.37170 6.63248 7.14111 7.31982 7.70870 8.77982 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.002686 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.801529 B =10423.822362 C =11109.972906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.106 3.894 3 N -0.449 5.449 4 C 0.207 3.793 5 C -0.040 4.040 6 C 0.215 3.785 7 H 0.039 0.961 8 O -0.579 6.579 9 C -0.558 4.558 10 H 0.051 0.949 11 C 0.036 3.964 12 N -0.933 5.933 13 Si 0.930 3.070 14 H -0.295 1.295 15 H -0.295 1.295 16 H -0.207 1.207 17 N -0.336 5.336 18 N -0.348 5.348 19 C 0.338 3.662 20 N -0.451 5.451 21 C 0.034 3.966 22 C 0.071 3.929 23 C 0.073 3.927 24 O -0.392 6.392 25 C 0.092 3.908 26 C -0.165 4.165 27 C -0.180 4.180 28 C -0.166 4.166 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.369 0.631 37 H 0.267 0.733 38 H 0.058 0.942 39 H 0.110 0.890 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.103 0.897 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.068 -3.150 -28.931 32.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 N -0.141 5.141 4 C -0.062 4.062 5 C -0.080 4.080 6 C 0.156 3.844 7 H 0.057 0.943 8 O -0.387 6.387 9 C -0.595 4.595 10 H 0.069 0.931 11 C -0.165 4.165 12 N -0.572 5.572 13 Si 0.755 3.245 14 H -0.223 1.223 15 H -0.221 1.221 16 H -0.129 1.129 17 N -0.177 5.177 18 N -0.192 5.192 19 C -0.019 4.019 20 N -0.177 5.177 21 C -0.113 4.113 22 C -0.056 4.056 23 C -0.003 4.003 24 O -0.311 6.311 25 C 0.016 3.984 26 C -0.183 4.183 27 C -0.217 4.217 28 C -0.203 4.203 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.218 0.782 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.113 0.887 50 H 0.121 0.879 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.225 -2.067 -28.881 31.832 hybrid contribution 0.391 -0.635 0.545 0.924 sum -12.834 -2.702 -28.336 31.224 Atomic orbital electron populations 1.22030 0.92568 1.04454 1.02067 1.22108 0.96476 0.77233 1.05709 1.46486 1.47725 1.14515 1.05343 1.25041 0.99899 0.88563 0.92720 1.20682 1.00748 1.02361 0.84237 1.19411 0.92133 0.83978 0.88900 0.94276 1.86689 1.54683 1.28568 1.68765 1.21688 1.01933 1.41912 0.94008 0.93055 1.25700 1.01403 0.93807 0.95549 1.70051 1.30807 1.42942 1.13376 0.86124 0.78286 0.76758 0.83307 1.22256 1.22137 1.12904 1.73922 1.21393 1.18798 1.03538 1.74389 1.20456 1.20444 1.03948 1.22552 1.02211 0.87589 0.89546 1.58812 1.12816 1.51508 0.94545 1.22520 0.88598 1.01264 0.98874 1.22223 0.93957 0.93439 0.95994 1.22553 0.96729 0.86258 0.94810 1.87962 1.75430 1.37047 1.30690 1.22059 0.97223 0.92899 0.86214 1.22115 1.04332 0.92494 0.99384 1.23115 0.97607 0.97133 1.03884 1.23052 0.97181 1.02930 0.97113 0.92989 0.92374 0.88039 0.87814 0.87832 0.88730 0.88055 0.78209 0.92395 0.92352 0.87147 0.94279 0.91307 0.91330 0.90430 0.91318 0.92202 0.92540 0.88191 0.88323 0.88656 0.87895 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 10.24 71.98 0.74 -2.31 16 2 C 0.11 2.53 6.68 86.38 0.58 3.10 16 3 N -0.45 -14.23 2.81 -514.86 -1.45 -15.67 16 4 C 0.21 7.79 7.09 137.64 0.98 8.77 16 5 C -0.04 -1.51 5.00 29.85 0.15 -1.36 16 6 C 0.21 9.60 2.30 29.85 0.07 9.67 16 7 H 0.04 1.96 7.57 -2.39 -0.02 1.94 16 8 O -0.58 -23.41 9.16 -148.98 -1.36 -24.77 16 9 C -0.56 -29.81 9.34 25.60 0.24 -29.57 16 10 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 11 C 0.04 2.03 5.47 84.65 0.46 2.49 16 12 N -0.93 -56.46 13.96 21.45 0.30 -56.16 16 13 Si 0.93 44.98 26.99 68.60 1.85 46.83 16 14 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 15 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 16 H -0.21 -9.51 5.31 99.48 0.53 -8.99 16 17 N -0.34 -14.27 12.18 -49.54 -0.60 -14.87 16 18 N -0.35 -13.46 12.17 -58.00 -0.71 -14.16 16 19 C 0.34 10.84 6.40 260.11 1.66 12.51 16 20 N -0.45 -10.85 4.73 -730.93 -3.45 -14.31 16 21 C 0.03 0.71 9.23 127.69 1.18 1.89 16 22 C 0.07 1.42 5.24 86.30 0.45 1.87 16 23 C 0.07 1.01 5.99 71.98 0.43 1.44 16 24 O -0.39 -6.78 10.29 -148.98 -1.53 -8.31 16 25 C 0.09 1.15 6.22 71.98 0.45 1.60 16 26 C -0.16 -2.13 6.06 -10.80 -0.07 -2.20 16 27 C -0.18 -2.03 10.18 30.59 0.31 -1.71 16 28 C -0.17 -1.55 10.25 30.59 0.31 -1.24 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.10 2.40 5.36 -2.39 -0.01 2.38 16 34 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 35 H 0.10 3.27 7.78 -2.38 -0.02 3.25 16 36 H 0.37 12.30 7.68 -74.06 -0.57 11.73 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.06 1.36 8.10 -2.38 -0.02 1.34 16 39 H 0.11 1.55 6.46 -2.39 -0.02 1.53 16 40 H 0.04 0.85 8.13 -2.39 -0.02 0.83 16 41 H 0.07 1.58 8.05 -2.39 -0.02 1.56 16 42 H 0.07 1.38 8.11 -2.39 -0.02 1.36 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 44 H 0.07 0.75 6.37 -2.39 -0.02 0.73 16 45 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 0.60 7.87 -2.39 -0.02 0.58 16 47 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.10 1.01 8.03 -2.39 -0.02 0.99 16 49 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.09 412.84 1.16 -71.93 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.17 Total: 24.57 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 7.94 Total: 4.94 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -5.91 Total: -115.18 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -2.90 Total: -33.08 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.85 Total: 46.83 kcal Total: -73.09 1.16 -71.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341199382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.157 kcal (2) G-P(sol) polarization free energy of solvation -73.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds